jgi.p|Nanoce1779_2|601115, mRNA_8208 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|601115
Unique NamemRNA_8208
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length661
Alignment locationscaffold_23:50834..51494 +

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Properties
Property NameValue
TranscriptId601201
TrackFilteredModels2
ProteinId601115
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_23supercontigscaffold_23:50834..51494 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601115gene_8208Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601115mRNA_8208-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8208CDS_8208Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8208 ID=mRNA_8208|Name=jgi.p|Nanoce1779_2|601115|organism=Nannochloropsis oceanica|type=mRNA|length=661bp
AGATGGAGGCAGCTTCGGCAGAAAACGCTGCTGCTTCCATTCATCTGGCA
GCTGTAGATCTGAGTGGGCGTGATGACGGAGAGGTTGAGGGAGAGGGCCT
CTACGGCGAGCTCGCTTCTCCCCCTGCTGGGAGTGAAAGAAGGAAGGAGG
AAGGTGGTGACGTGGAGGAAGAAAAAGAAGATGAAGAAGAGGAGGAGGAC
ATGCCTTTCGACAAGGAGGACGGAGCCCCGGAGGATCTTATTTGTCCACT
TTCGTTGTGTTTATTCGAGGACGTGGTGATGGCGATGGACGGCATCAGCT
ACTCCCGCCAATCGATTCAGTCGCACATCGATTTTTGCAAGGCAAAGGGG
AGGCCCGTCACATCGCCCATGACGGGGGAGAAGATGGAGACACTGTTGGT
GCCAAATGTGATGGCCAGGAGGATGGTGTTGGAATATATACAGGAGAAGA
AGAATGAGTGGACCCGACGGAAACGAGGGGAAGGTGTGGGAAGACAGGAG
TCCACAACAGGAGGAAAAATTATTGAGGCGGAGAAAGTGAAGAAAGGTTT
GTATAGCTAGCCCTGATTTGATCAAGAGGATTCCTCAATTAAAGAAAAAT
AACTGTAATCAAAGCCCTTGACACGATGGAAGAGGGGCATGCGTGCGTGC
AGGTTGGCGGG
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protein sequence of jgi.p|Nanoce1779_2|601115

>mRNA_8208-protein ID=mRNA_8208-protein|Name=jgi.p|Nanoce1779_2|601115|organism=Nannochloropsis oceanica|type=polypeptide|length=186bp
MEAASAENAAASIHLAAVDLSGRDDGEVEGEGLYGELASPPAGSERRKEE
GGDVEEEKEDEEEEEDMPFDKEDGAPEDLICPLSLCLFEDVVMAMDGISY
SRQSIQSHIDFCKAKGRPVTSPMTGEKMETLLVPNVMARRMVLEYIQEKK
NEWTRRKRGEGVGRQESTTGGKIIEAEKVKKGLYS*
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mRNA from alignment at scaffold_23:50834..51494+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8208 ID=mRNA_8208|Name=jgi.p|Nanoce1779_2|601115|organism=Nannochloropsis oceanica|type=mRNA|length=661bp|location=Sequence derived from alignment at scaffold_23:50834..51494+ (Nannochloropsis oceanica)
AGATGGAGGCAGCTTCGGCAGAAAACGCTGCTGCTTCCATTCATCTGGCA
GCTGTAGATCTGAGTGGGCGTGATGACGGAGAGGTTGAGGGAGAGGGCCT
CTACGGCGAGCTCGCTTCTCCCCCTGCTGGGAGTGAAAGAAGGAAGGAGG
AAGGTGGTGACGTGGAGGAAGAAAAAGAAGATGAAGAAGAGGAGGAGGAC
ATGCCTTTCGACAAGGAGGACGGAGCCCCGGAGGATCTTATTTGTCCACT
TTCGTTGTGTTTATTCGAGGACGTGGTGATGGCGATGGACGGCATCAGCT
ACTCCCGCCAATCGATTCAGTCGCACATCGATTTTTGCAAGGCAAAGGGG
AGGCCCGTCACATCGCCCATGACGGGGGAGAAGATGGAGACACTGTTGGT
GCCAAATGTGATGGCCAGGAGGATGGTGTTGGAATATATACAGGAGAAGA
AGAATGAGTGGACCCGACGGAAACGAGGGGAAGGTGTGGGAAGACAGGAG
TCCACAACAGGAGGAAAAATTATTGAGGCGGAGAAAGTGAAGAAAGGTTT
GTATAGCTAGCCCTGATTTGATCAAGAGGATTCCTCAATTAAAGAAAAAT
AACTGTAATCAAAGCCCTTGACACGATGGAAGAGGGGCATGCGTGCGTGC
AGGTTGGCGGG
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Coding sequence (CDS) from alignment at scaffold_23:50834..51494+

>mRNA_8208 ID=mRNA_8208|Name=jgi.p|Nanoce1779_2|601115|organism=Nannochloropsis oceanica|type=CDS|length=558bp|location=Sequence derived from alignment at scaffold_23:50834..51494+ (Nannochloropsis oceanica)
ATGGAGGCAGCTTCGGCAGAAAACGCTGCTGCTTCCATTCATCTGGCAGC
TGTAGATCTGAGTGGGCGTGATGACGGAGAGGTTGAGGGAGAGGGCCTCT
ACGGCGAGCTCGCTTCTCCCCCTGCTGGGAGTGAAAGAAGGAAGGAGGAA
GGTGGTGACGTGGAGGAAGAAAAAGAAGATGAAGAAGAGGAGGAGGACAT
GCCTTTCGACAAGGAGGACGGAGCCCCGGAGGATCTTATTTGTCCACTTT
CGTTGTGTTTATTCGAGGACGTGGTGATGGCGATGGACGGCATCAGCTAC
TCCCGCCAATCGATTCAGTCGCACATCGATTTTTGCAAGGCAAAGGGGAG
GCCCGTCACATCGCCCATGACGGGGGAGAAGATGGAGACACTGTTGGTGC
CAAATGTGATGGCCAGGAGGATGGTGTTGGAATATATACAGGAGAAGAAG
AATGAGTGGACCCGACGGAAACGAGGGGAAGGTGTGGGAAGACAGGAGTC
CACAACAGGAGGAAAAATTATTGAGGCGGAGAAAGTGAAGAAAGGTTTGT
ATAGCTAG
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Synonyms
Publications