jgi.p|Nanoce1779_2|546360, mRNA_8185 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|546360
Unique Name	mRNA_8185
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1931
Alignment location	scaffold_25:367051..369327 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	546446
Track	FilteredModels2
ProteinId	546360

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_25	supercontig	scaffold_25:367051..369327 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|546360	gene_8185	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|546360	mRNA_8185-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8185	CDS_8185	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_25:367051..369327+
coding sequence from alignment at scaffold_25:367051..369327+

mRNA sequence

>mRNA_8185 ID=mRNA_8185|Name=jgi.p|Nanoce1779_2|546360|organism=Nannochloropsis oceanica|type=mRNA|length=1931bp
CGTATGCAAGTCCTAGAGGACGTCAGGTTGCATGCGATAGTTCTAGAGAG
ATGTAGCAGAGTGCTCTCGATCCCTCCCACCCTCGCGCCCGCGCCATCAC
CTCCTCCTCCTCCTCCTTGACCATGGGCCAGCGATACCTGCAGGGTGCAG
GGACTCGGGGAAGAAAGGATGAGGGTAAAGGGCCTCATTCACTCTGTTGC
CCTCGGATCTTGACCTTTGTTCCATCACCAGACATAGCGGCTCCTGCTTT
TGTTTTCCCTCCATAGTCCTAGCGACCGGTAAAGCCTGCTCAAGTACCGT
GTTTGTATGCTCAACTAGTTCGTGGTCTGGGTACTTGCTTGCTTTCCTCG
ACCGCAGCCGCCTCCTTGTCGGTTTGCCGCATTGTTTTTGTTCCGCGTCG
ATCCTGGTCCAAACGCGTGCCGGCTGCCTTTTTCTGCTGCGGCCTTGGGA
CTAGCTCGCCTGCATGTCCTGCCCATGGCTTTTGAGTGCACCACCCTCAC
AAGAATGCATGTATCAGCCTTTTCATCTGTCCAAACTAGGTGGGCGCTGT
TTTTCTCAACTGCACATCATACGATGGAGCCTCCCTCTCCCCACCCCCCC
AAAAGCAATCCCCGTGCACCCAAAAAGCTCAAAGCACTCAGGACTCACAA
AGACATACATCTACACATGATATATATATATATATATAAAACCTACAGCC
CCCTTGTTCCACCACCATGAAGATCTCCTTCGCTCTCGCTGCCCTCCTCC
CCTGCGCCGCTGCTTTCGTGGCCCCCGCTATCCCCTCCGTCACCTCCAGC
ACCGGCACGGCCGCCGCCCGTGGCCGCACAGTGATGATGGCCGAGCGTTC
CAAGTCCCTCCCCTTCCTGATGAAGCCCAAGAATTTGGACGGCTCCATGG
CTGGTGATGTGGGGTTCGATCCTCTCGGCTTGTCCGAGATCAACGACGTG
GGCGTGGATTTGTACTGGCTGCGTGAGGCGGAGCTGAAGCACTGCCGCCT
GGGCATGATGGCAGCTGCTGGCATCCTCTTCGTGGAAATTCTGGGACCTG
CCCCTGGTTTCCCGGCAGGCAAGAGCCAGATGGACGTGTTCTGGAAGGTA
TACGCGGAGAAGCCCTCCCTAATCGGCGCGTCCTTGGCTGCAATTGCCAT
TTTGGAGGTTATTTCGGGGGTGGCTACGACTCAAGGGCGACAGAACGGCG
ACCGTGCTCCTGGGGACTACAACTTTGACCCTCTTGGCTTCGGCAAGGAT
CCCGCGAAGTTTAAGGACTTGCAGTTGAAGGAGGTTAAAAACGGCCGCCT
CGCCATGATCGCCGCTGCCGGCATGATCCTCCAGGCGTCTCCACCCACCC
AGGGGCCCTTGAGAACTGAGGTGGTTAAAACCATCTGTGATTTATTTGTT
CTTTTGAAGAATTACATGAAAACCACCGATTTTTCATTCAACGAGAACAC
CGTGAGTTAGGAAGGGAGAGTGAGATTGAGAAGAAGAAAGAAACGAGAAA
CCAAGCCGTTCACAGGTTGTGGTGTTGTTATGGTGGTGGCAGTCGTGATG
GTAGTGATTTTCTTTCCCTTTCCCATCAAGCTGCTGAAGTTCCGACAGGC
AAATGATCACAACAATGACAATTACTTTCAAATTGAGGAAAGGAGGGAGG
GAGACGGGAATGCAAGTATAGAAGTGTACGTGGGCGCTCCCGCTAATGTA
CTTTTTTGAGGGAGAGAAGGAAAAGGCGGATGAAGAGGAAGGAAAATAGG
AGGCTAATGAGCTGAGGCGAGTACTGGTATCTCTGTGTAAACATTTTTAC
TTGCAACAGGCTGTTTAGGTCAGAGATAGAGAGAGAGAGAGAGTGAAAGA
AGAGAGAAGAGAGAGAGATAGAAAGCGTAGTGGAGGAGGTTGTCGCAATG
TTGCGAAAGAAAGAAATCAAGTCAACTTTCC

protein sequence of jgi.p|Nanoce1779_2|546360

>mRNA_8185-protein ID=mRNA_8185-protein|Name=jgi.p|Nanoce1779_2|546360|organism=Nannochloropsis oceanica|type=polypeptide|length=248bp
MKISFALAALLPCAAAFVAPAIPSVTSSTGTAAARGRTVMMAERSKSLPF
LMKPKNLDGSMAGDVGFDPLGLSEINDVGVDLYWLREAELKHCRLGMMAA
AGILFVEILGPAPGFPAGKSQMDVFWKVYAEKPSLIGASLAAIAILEVIS
GVATTQGRQNGDRAPGDYNFDPLGFGKDPAKFKDLQLKEVKNGRLAMIAA
AGMILQASPPTQGPLRTEVVKTICDLFVLLKNYMKTTDFSFNENTVS*

mRNA from alignment at scaffold_25:367051..369327+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8185 ID=mRNA_8185|Name=jgi.p|Nanoce1779_2|546360|organism=Nannochloropsis oceanica|type=mRNA|length=2277bp|location=Sequence derived from alignment at scaffold_25:367051..369327+ (Nannochloropsis oceanica)
CGTATGCAAGTCCTAGAGGACGTCAGGTTGCATGCGATAGTTCTAGAGAG
ATGTAGCAGAGTGCTCTCGATCCCTCCCACCCTCGCGCCCGCGCCATCAC
CTCCTCCTCCTCCTCCTTGACCATGGGCCAGCGATACCTGCAGGGTGCAG
GGACTCGGGGAAGAAAGGATGAGGGTAAAGGGCCTCATTCACTCTGTTGC
CCTCGGATCTTGACCTTTGTTCCATCACCAGACATAGCGGCTCCTGCTTT
TGTTTTCCCTCCATAGTCCTAGCGACCGGTAAAGCCTGCTCAAGTACCGT
GTTTGTATGCTCAACTAGTTCGTGGTCTGGGTACTTGCTTGCTTTCCTCG
ACCGCAGCCGCCTCCTTGTCGGTTTGCCGCATTGTTTTTGTTCCGCGTCG
ATCCTGGTCCAAACGCGTGCCGGCTGCCTTTTTCTGCTGCGGCCTTGGGA
CTAGCTCGCCTGCATGTCCTGCCCATGGCTTTTGAGTGCACCACCCTCAC
AAGAATGCATGTATCAGCCTTTTCATCTGTCCAAACTAGGTGGGCGCTGT
TTTTCTCAACTGCACATCATACGATGGAGCCTCCCTCTCCCCACCCCCCC
AAAAGCAATCCCCGTGCACCCAAAAAGCTCAAAGCACTCAGGACTCACAA
AGACATACATCTACACATGATATATATATATATATATAAAACCTACAGCC
CCCTTGTTCCACCACCATGAAGATCTCCTTCGCTCTCGCTGCCCTCCTCC
CCTGCGCCGCTGCTTTCGTGGCCCCCGCTATCCCCTCCGTCACCTCCAGC
ACCGGCACGGCCGCCGCCCGTGGCCGCACAGTGATGATGGCCGAGCGTTC
CAAGTCCCTCCCCTTCCTGATGAAGCCCAAGAATTTGGACGGCTCCATGG
CTGGTGATGTGGGGTTCGATCCTCTCGGCTTGTCCGAGATCAACGACGTG
GGCGTGGATTTGTACTGGCTGCGTGAGGCGGAGCTGAAGCACTGCCGCCT
GGGCATGATGGCAGCTGCTGGCATCCTCTTCGTGGAAATTCTGGGACCTG
CCCCTGGTTTCCCGGCAGGCAAGAGCCAGATGGACGTGTTCTGGAAGGTA
TACGCGGAGAAGCCCTCCCTAATCGGCGCGTCCTTGGCTGCAATTGCCAT
TTTGGAGGTTATTTCGGGGGTGGCTACGACTCAAGGGCGACAGAACGGCG
ACCGTGCTCCTGGGGACTACAACTTTGACCCTCTTGGCTTCGGCAAGGAT
CCCGCGAAGTTTAAGGACTTGCAGGTAGGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGAAGGAAAGAAAGAAAGAAGGGAAGGAG
GAAGGAAAGAAGGGAGGGATTTCTTTCTTTCTTTCTTTCTTCCTTCCCTC
CCTCCCTCCTTTCCTATCTTCCTTCCCTCCTTCCTTCTTCCCTTCTTTCC
CTTCTTTCCTTAGGGTGTCGGCGCTTGTGCCCCCTGTATGTAAAGGGTAA
TGTGTTTCGGTTTTAAATGAAAACGACGGCAATTCTTCGCGCGCCCATCA
TACCTATAAGTACACCGCGGGTCTAATCCTTCCTTTCTTCCCTCCCTCTC
TACCTTTTCGTCTCCATTAGTTGAAGGAGGTTAAAAACGGCCGCCTCGCC
ATGATCGCCGCTGCCGGCATGATCCTCCAGGCGTCTCCACCCACCCAGGG
GCCCTTGAGAACTGAGGTGGTTAAAACCATCTGTGATTTATTTGTTCTTT
TGAAGAATTACATGAAAACCACCGATTTTTCATTCAACGAGAACACCGTG
AGTTAGGAAGGGAGAGTGAGATTGAGAAGAAGAAAGAAACGAGAAACCAA
GCCGTTCACAGGTTGTGGTGTTGTTATGGTGGTGGCAGTCGTGATGGTAG
TGATTTTCTTTCCCTTTCCCATCAAGCTGCTGAAGTTCCGACAGGCAAAT
GATCACAACAATGACAATTACTTTCAAATTGAGGAAAGGAGGGAGGGAGA
CGGGAATGCAAGTATAGAAGTGTACGTGGGCGCTCCCGCTAATGTACTTT
TTTGAGGGAGAGAAGGAAAAGGCGGATGAAGAGGAAGGAAAATAGGAGGC
TAATGAGCTGAGGCGAGTACTGGTATCTCTGTGTAAACATTTTTACTTGC
AACAGGCTGTTTAGGTCAGAGATAGAGAGAGAGAGAGAGTGAAAGAAGAG
AGAAGAGAGAGAGATAGAAAGCGTAGTGGAGGAGGTTGTCGCAATGTTGC
GAAAGAAAGAAATCAAGTCAACTTTCC

Coding sequence (CDS) from alignment at scaffold_25:367051..369327+

>mRNA_8185 ID=mRNA_8185|Name=jgi.p|Nanoce1779_2|546360|organism=Nannochloropsis oceanica|type=CDS|length=1488bp|location=Sequence derived from alignment at scaffold_25:367051..369327+ (Nannochloropsis oceanica)
ATGAAGATCTCCTTCGCTCTCGCTGCCCTCCTCCCCTGCGCCGCTGCTTT
CGTGGCCCCCGCTATCCCCTCCGTCACCTCCAGCACCGGCACGGCCGCCG
CCCGTGGCCGCACAGTGATGATGGCCGAGCGTTCCAAGTCCCTCCCCTTC
CTGATGAAGCCCAAGAATTTGGACGGCTCCATGGCTGGTGATGTGGGGTT
CGATCCTCTCGGCTTGTCCGAGATCAACGACGTGGGCGTGGATTTGTACT
GGCTGCGTGAGGCGGAGCTGAAGCACTGCCGCCTGGGCATGATGGCAGCT
GCTGGCATCCTCTTCGTGGAAATTCTGGGACCTGCCCCTGGTTTCCCGGC
AGGCAAGAGCCAGATGGACGTGTTCTGGAAGGTATACGCGGAGAAGCCCT
CCCTAATCGGCGCGTCCTTGGCTGCAATTGCCATTTTGGAGGTTATTTCG
GGGGTGGCTACGACTCAAGGGCGACAGAACGGCGACCGTGCTCCTGGGGA
CTACAACTTTGACCCTCTTGGCTTCGGCAAGGATCCCGCGAAGTTTAAGG
ACTTGCAGTTGAAGGAGGTTAAAAACGGCCGCCTCGCCATGATCGCCGCT
GCCGGCATGATCCTCCAGGCGTCTCCACCCACCCAGGGGCCCTTGAGAAC
TGAGGTGGTTAAAACCATCTGTGATTTATTTGTTCTTTTGAAGAATTACA
TGAAAACCACCGATTTTTCATTCAACGAGAACACCGTGAGTTAGATGAAG
ATCTCCTTCGCTCTCGCTGCCCTCCTCCCCTGCGCCGCTGCTTTCGTGGC
CCCCGCTATCCCCTCCGTCACCTCCAGCACCGGCACGGCCGCCGCCCGTG
GCCGCACAGTGATGATGGCCGAGCGTTCCAAGTCCCTCCCCTTCCTGATG
AAGCCCAAGAATTTGGACGGCTCCATGGCTGGTGATGTGGGGTTCGATCC
TCTCGGCTTGTCCGAGATCAACGACGTGGGCGTGGATTTGTACTGGCTGC
GTGAGGCGGAGCTGAAGCACTGCCGCCTGGGCATGATGGCAGCTGCTGGC
ATCCTCTTCGTGGAAATTCTGGGACCTGCCCCTGGTTTCCCGGCAGGCAA
GAGCCAGATGGACGTGTTCTGGAAGGTATACGCGGAGAAGCCCTCCCTAA
TCGGCGCGTCCTTGGCTGCAATTGCCATTTTGGAGGTTATTTCGGGGGTG
GCTACGACTCAAGGGCGACAGAACGGCGACCGTGCTCCTGGGGACTACAA
CTTTGACCCTCTTGGCTTCGGCAAGGATCCCGCGAAGTTTAAGGACTTGC
AGTTGAAGGAGGTTAAAAACGGCCGCCTCGCCATGATCGCCGCTGCCGGC
ATGATCCTCCAGGCGTCTCCACCCACCCAGGGGCCCTTGAGAACTGAGGT
GGTTAAAACCATCTGTGATTTATTTGTTCTTTTGAAGAATTACATGAAAA
CCACCGATTTTTCATTCAACGAGAACACCGTGAGTTAG

Synonyms

Publications