jgi.p|Nanoce1779_2|533627, mRNA_10055 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|533627
Unique NamemRNA_10055
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length459
Alignment locationscaffold_42:182939..183652 -

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Properties
Property NameValue
TranscriptId533713
TrackFilteredModels2
ProteinId533627
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_42supercontigscaffold_42:182939..183652 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|533627gene_10055Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|533627mRNA_10055-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10055CDS_10055Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10055 ID=mRNA_10055|Name=jgi.p|Nanoce1779_2|533627|organism=Nannochloropsis oceanica|type=mRNA|length=459bp
GAGGGAGGGAAGAAGGGAGAGGAAGGCATCACGATCGAGCCAGTGCCTCT
CGTGAATTTCCCGGAAGGCATTGCTTTTCATCCGCATGGAATGTACTACC
ATAGGGAAACCTCGAAGCTTTTCGTCATCAACCATGCCTACGAGAAAGGC
GGCGAGCGCATCGACGTCTTCCACCTCCCCTTCACCACCATCACCAGCAG
CAGGAGCAGAAGCAGCAGGAGGATGAGGCTCGTGCATGCGAGATGGTTGT
ATGTCCTGGCTCCACCTATATTCCAAGCCGAGTGTATGGGCACCCTGAAT
GACCTCGTTGTCCTGCACTCCCTCCCTGCCGCTGCGGCTGGTGGGAAGGA
GGGAGGGAGGGAGCCAAGGAGGGAGGACGAGCTGTATGTAACGCATTACC
GAGCGTTTCCGGACGCGGCGGCGGGACGGTTGGTCCCTGGCAATATCTTG
GCTGGGTAG
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protein sequence of jgi.p|Nanoce1779_2|533627

>mRNA_10055-protein ID=mRNA_10055-protein|Name=jgi.p|Nanoce1779_2|533627|organism=Nannochloropsis oceanica|type=polypeptide|length=153bp
EGGKKGEEGITIEPVPLVNFPEGIAFHPHGMYYHRETSKLFVINHAYEKG
GERIDVFHLPFTTITSSRSRSSRRMRLVHARWLYVLAPPIFQAECMGTLN
DLVVLHSLPAAAAGGKEGGREPRREDELYVTHYRAFPDAAAGRLVPGNIL
AG*
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mRNA from alignment at scaffold_42:182939..183652-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10055 ID=mRNA_10055|Name=jgi.p|Nanoce1779_2|533627|organism=Nannochloropsis oceanica|type=mRNA|length=714bp|location=Sequence derived from alignment at scaffold_42:182939..183652- (Nannochloropsis oceanica)
GAGGGAGGGAAGAAGGGAGAGGAAGGCATCACGATCGAGCCAGTGCCTCT
CGTGAATTTCCCGGAAGGCATTGCTTTTCATCCGCATGGAATGTACTACC
ATAGGTGAGAAGGGAGGGAGGGAGGTGGAGGATCGGGCAGGTTGACCTGC
ACGTACAAGGAATAAGGGGGGAGAGCAATGGGGGAGATTCAGACGACTGA
GAAACATCACACTCACCCTAGGGAAACCTCGAAGCTTTTCGTCATCAACC
ATGCCTACGAGAAAGGTAAGACGCTCCCCCTTTCTTCCTTCCTCCATTCT
TCCCACCCTCCCTCCTTTCCTCCTGCCCTGCCTCCCTCCCTCCCTCCCAC
CCATCCTCACACCTTTTCACCCTCTCTCTCCCTTCTTCTTCATTCCCATC
CAGGCGGCGAGCGCATCGACGTCTTCCACCTCCCCTTCACCACCATCACC
AGCAGCAGGAGCAGAAGCAGCAGGAGGATGAGGCTCGTGCATGCGAGATG
GTTGTATGTCCTGGCTCCACCTATATTCCAAGCCGAGTGTATGGGCACCC
TGAATGACCTCGTTGTCCTGCACTCCCTCCCTGCCGCTGCGGCTGGTGGG
AAGGAGGGAGGGAGGGAGCCAAGGAGGGAGGACGAGCTGTATGTAACGCA
TTACCGAGCGTTTCCGGACGCGGCGGCGGGACGGTTGGTCCCTGGCAATA
TCTTGGCTGGGTAG
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Coding sequence (CDS) from alignment at scaffold_42:182939..183652-

>mRNA_10055 ID=mRNA_10055|Name=jgi.p|Nanoce1779_2|533627|organism=Nannochloropsis oceanica|type=CDS|length=1377bp|location=Sequence derived from alignment at scaffold_42:182939..183652- (Nannochloropsis oceanica)
GCGGCGAGCGCATCGACGTCTTCCACCTCCCCTTCACCACCATCACCAGC
AGCAGGAGCAGAAGCAGCAGGAGGATGAGGCTCGTGCATGCGAGATGGTT
GTATGTCCTGGCTCCACCTATATTCCAAGCCGAGTGTATGGGCACCCTGA
ATGACCTCGTTGTCCTGCACTCCCTCCCTGCCGCTGCGGCTGGTGGGAAG
GAGGGAGGGAGGGAGCCAAGGAGGGAGGACGAGCTGTATGTAACGCATTA
CCGAGCGTTTCCGGACGCGGCGGCGGGACGGTTGGTCCCTGGCAATATCT
TGGCTGGGTAGGGAAACCTCGAAGCTTTTCGTCATCAACCATGCCTACGA
GAAAGGAGGGAGGGAAGAAGGGAGAGGAAGGCATCACGATCGAGCCAGTG
CCTCTCGTGAATTTCCCGGAAGGCATTGCTTTTCATCCGCATGGAATGTA
CTACCATAGGCGGCGAGCGCATCGACGTCTTCCACCTCCCCTTCACCACC
ATCACCAGCAGCAGGAGCAGAAGCAGCAGGAGGATGAGGCTCGTGCATGC
GAGATGGTTGTATGTCCTGGCTCCACCTATATTCCAAGCCGAGTGTATGG
GCACCCTGAATGACCTCGTTGTCCTGCACTCCCTCCCTGCCGCTGCGGCT
GGTGGGAAGGAGGGAGGGAGGGAGCCAAGGAGGGAGGACGAGCTGTATGT
AACGCATTACCGAGCGTTTCCGGACGCGGCGGCGGGACGGTTGGTCCCTG
GCAATATCTTGGCTGGGTAGGGAAACCTCGAAGCTTTTCGTCATCAACCA
TGCCTACGAGAAAGGAGGGAGGGAAGAAGGGAGAGGAAGGCATCACGATC
GAGCCAGTGCCTCTCGTGAATTTCCCGGAAGGCATTGCTTTTCATCCGCA
TGGAATGTACTACCATAGGCGGCGAGCGCATCGACGTCTTCCACCTCCCC
TTCACCACCATCACCAGCAGCAGGAGCAGAAGCAGCAGGAGGATGAGGCT
CGTGCATGCGAGATGGTTGTATGTCCTGGCTCCACCTATATTCCAAGCCG
AGTGTATGGGCACCCTGAATGACCTCGTTGTCCTGCACTCCCTCCCTGCC
GCTGCGGCTGGTGGGAAGGAGGGAGGGAGGGAGCCAAGGAGGGAGGACGA
GCTGTATGTAACGCATTACCGAGCGTTTCCGGACGCGGCGGCGGGACGGT
TGGTCCCTGGCAATATCTTGGCTGGGTAGGGAAACCTCGAAGCTTTTCGT
CATCAACCATGCCTACGAGAAAGGAGGGAGGGAAGAAGGGAGAGGAAGGC
ATCACGATCGAGCCAGTGCCTCTCGTGAATTTCCCGGAAGGCATTGCTTT
TCATCCGCATGGAATGTACTACCATAG
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Synonyms
Publications