jgi.p|Nanoce1779_2|533627, gene_10055 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|533627
Unique Name	gene_10055
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Alignment location	scaffold_42:182939..183652 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	533713
ProteinId	533627
Product name	hypothetical protein
Portal id	Nanoce1779_2

Mutants

Expression

Analysis:

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_42	supercontig	scaffold_42:182939..183652 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE164714	2022-03-15
PRJNA285666	2019-07-03
PRJNA157867	2019-07-02
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
ncniL062	ncniL062	Nannochloropsis oceanica (N. oceanica CCMP1779)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO23G01390	NO23G01390	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|533627	mRNA_10055-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|533627	mRNA_10055	Nannochloropsis oceanica (N. oceanica CCMP1779)	mRNA

Sequences

The following sequences are available for this feature:

protein sequence

protein sequence of jgi.p|Nanoce1779_2|533627

>mRNA_10055-protein ID=mRNA_10055-protein|Name=jgi.p|Nanoce1779_2|533627|organism=Nannochloropsis oceanica|type=polypeptide|length=153bp
EGGKKGEEGITIEPVPLVNFPEGIAFHPHGMYYHRETSKLFVINHAYEKG
GERIDVFHLPFTTITSSRSRSSRRMRLVHARWLYVLAPPIFQAECMGTLN
DLVVLHSLPAAAAGGKEGGREPRREDELYVTHYRAFPDAAAGRLVPGNIL
AG*

Synonyms

Publications