jgi.p|Nanoce1779_2|633973, mRNA_10211 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|633973
Unique NamemRNA_10211
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length556
Alignment locationscaffold_50:22902..23630 -

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Properties
Property NameValue
TranscriptId634059
TrackFilteredModels2
ProteinId633973
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_50supercontigscaffold_50:22902..23630 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|633973gene_10211Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|633973mRNA_10211-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10211CDS_10211Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10211 ID=mRNA_10211|Name=jgi.p|Nanoce1779_2|633973|organism=Nannochloropsis oceanica|type=mRNA|length=556bp
TCAGGGCACCTACATCCTTTTTGCTATTTACACCTGCTCCATTCTTGCTG
TCATTATCGTACCTGCGACTTTCGCTGTTGCATCGAGCCCTCAGACAGCT
TATATTTTGAGGGTGTTGGGTGTGTGTCTCGCGGCAGCAGGGACAATCGG
CGCGATAAATTTGCCTAAGCTGTTGCTGATTCGCTCGGGTGTCGAAATGT
CGTTACAGGAAAACAAAACTACCGCGGGAGGCAAGACTATGGCCGGCAGC
GCTAAGACGAGCGGCAACGTCTCGGGTGGAAAAGACAGTGGAAGTACTCC
CACCATCATCCTGGTCAAGAGCCATATTCCTACTTCCGTCTTTAGTAAAA
TGCAAGACACGTTTGTTGCGATGAAAAAAGTGAAAGACAGGCAAGAGCAG
GGGTATGCGCTTGTGTCGTCGGAGTGGTCCGAATGCGTGGACGAAGTCAA
AGGATTGACGGACATTTTGGGGCGGTGTGCGGTGGAGAATGGAGGAGGAG
CAGCGGGAACGGGAAAGGAGGGTAAGGGAAGTGCAAGGGTGGCACCTTCC
TCATAA
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protein sequence of jgi.p|Nanoce1779_2|633973

>mRNA_10211-protein ID=mRNA_10211-protein|Name=jgi.p|Nanoce1779_2|633973|organism=Nannochloropsis oceanica|type=polypeptide|length=120bp
MSLQENKTTAGGKTMAGSAKTSGNVSGGKDSGSTPTIILVKSHIPTSVFS
KMQDTFVAMKKVKDRQEQGYALVSSEWSECVDEVKGLTDILGRCAVENGG
GAAGTGKEGKGSARVAPSS*
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mRNA from alignment at scaffold_50:22902..23630-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10211 ID=mRNA_10211|Name=jgi.p|Nanoce1779_2|633973|organism=Nannochloropsis oceanica|type=mRNA|length=729bp|location=Sequence derived from alignment at scaffold_50:22902..23630- (Nannochloropsis oceanica)
TCAGGGCACCTACATCCTTTTTGCTATTTACACCTGCTCCATTCTTGCTG
TCATTATCGTACCTGCGACTTTCGCTGTTGCATCGAGCCCTCAGACAGCT
TATATTTTGAGGGTGTTGGGTGTGTGTCTCGCGGCAGCAGGGACAATCGG
CGCGATAAATTTGCCTAAGCTGTTGCTGATTCGCTCGGGTGTCGAAATGT
CGTTACAGGTGCGTGTTTCTAACCCGCTACTCCATCTTCCTTCTCCCCCC
ATACGTTTAGCACAATGTTATAATACCACGGCTAAGGCAGGAAATCACAT
ACACTCACCTTCTTGCACTTTCCATACTTCATAACGCTACTTCCCTACTT
CCTCCCCTACCCTCTCGCCCACCCACCATAGGAAAACAAAACTACCGCGG
GAGGCAAGACTATGGCCGGCAGCGCTAAGACGAGCGGCAACGTCTCGGGT
GGAAAAGACAGTGGAAGTACTCCCACCATCATCCTGGTCAAGAGCCATAT
TCCTACTTCCGTCTTTAGTAAAATGCAAGACACGTTTGTTGCGATGAAAA
AAGTGAAAGACAGGCAAGAGCAGGGGTATGCGCTTGTGTCGTCGGAGTGG
TCCGAATGCGTGGACGAAGTCAAAGGATTGACGGACATTTTGGGGCGGTG
TGCGGTGGAGAATGGAGGAGGAGCAGCGGGAACGGGAAAGGAGGGTAAGG
GAAGTGCAAGGGTGGCACCTTCCTCATAA
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Coding sequence (CDS) from alignment at scaffold_50:22902..23630-

>mRNA_10211 ID=mRNA_10211|Name=jgi.p|Nanoce1779_2|633973|organism=Nannochloropsis oceanica|type=CDS|length=720bp|location=Sequence derived from alignment at scaffold_50:22902..23630- (Nannochloropsis oceanica)
GAAAACAAAACTACCGCGGGAGGCAAGACTATGGCCGGCAGCGCTAAGAC
GAGCGGCAACGTCTCGGGTGGAAAAGACAGTGGAAGTACTCCCACCATCA
TCCTGGTCAAGAGCCATATTCCTACTTCCGTCTTTAGTAAAATGCAAGAC
ACGTTTGTTGCGATGAAAAAAGTGAAAGACAGGCAAGAGCAGGGGTATGC
GCTTGTGTCGTCGGAGTGGTCCGAATGCGTGGACGAAGTCAAAGGATTGA
CGGACATTTTGGGGCGGTGTGCGGTGGAGAATGGAGGAGGAGCAGCGGGA
ACGGGAAAGGAGGGTAAGGGAAGTGCAAGGGTGGCACCTTCCTCATAAAT
GTCGTTACAGGAAAACAAAACTACCGCGGGAGGCAAGACTATGGCCGGCA
GCGCTAAGACGAGCGGCAACGTCTCGGGTGGAAAAGACAGTGGAAGTACT
CCCACCATCATCCTGGTCAAGAGCCATATTCCTACTTCCGTCTTTAGTAA
AATGCAAGACACGTTTGTTGCGATGAAAAAAGTGAAAGACAGGCAAGAGC
AGGGGTATGCGCTTGTGTCGTCGGAGTGGTCCGAATGCGTGGACGAAGTC
AAAGGATTGACGGACATTTTGGGGCGGTGTGCGGTGGAGAATGGAGGAGG
AGCAGCGGGAACGGGAAAGGAGGGTAAGGGAAGTGCAAGGGTGGCACCTT
CCTCATAAATGTCGTTACAG
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Synonyms
Publications