jgi.p|Nanoce1779_2|612349, mRNA_10432 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|612349
Unique NamemRNA_10432
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1387
Alignment locationscaffold_63:71104..73881 +

Link to JBrowse

Properties
Property NameValue
TranscriptId612435
TrackFilteredModels2
ProteinId612349
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_63supercontigscaffold_63:71104..73881 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612349gene_10432Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612349mRNA_10432-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10432CDS_10432Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10432 ID=mRNA_10432|Name=jgi.p|Nanoce1779_2|612349|organism=Nannochloropsis oceanica|type=mRNA|length=1387bp
GAGGAGGAGGAGGAGGAGGAGGGGGAGGAAATGGAGGACCGAGGCTACCC
TCTCCCAAGAACATGTTCAACAAGAAGCGGTTTACATTCTTGTCGGGTGG
GAGCAAAGAAGGAGGAAAAGATAAAGCCGCAGAGACGGAATATAAAGTGA
AGGGGCGAGCGGCACCCGGGCATCTACCTTCGCTATTGCAAACACACGCC
TCTTCGGCCTTTTCCCTCGTGACGCCTCCAATAGTGCCTTCCCCTTCCCC
CCACCAGATCACCAAGCCCCACCGCATCATCCTCGTCCGTCATGGCGAGA
GCACGGGCAATGCCGACGAGCGCGTGTATGTCCAAACCCCTGATTGGAAG
GTCCCTCTATCCCCCGTCGGCCACGAGCAAGCCCGCGAGACCGGACGGCA
GCTCAAGGCGCTGATAGGGGACGAGCCGCTCTACATCTATACCTCACCCT
ACAGACGGACGAAGCAGACCCTGAGCGACATGTTGGAGTCGCTCGAGGAC
AATCTTAAGGTCGGCATCCGGGAGGAGCCGCGCATCACGGAGCAGCAATT
CGGCAACTTCCAATGCCACCAGCTGGTCCAGCAGGCAAAGAAGGATCGAT
CCAACTTCGGTCGCTTCTACTTCCGGTTTCCAAACGGCGAGTCTGGCCTG
GATGTGTACACGCGCGTGACCTCCTTTATCTCAACCATGTTCAGGGACTT
CGCGGATGGGCACATCTGTAGGCCCGACCTGAACATCATCATCGTTACGC
ACGGCCTCACCCTCAGGCTGGTGCGCCACGAGGGGAGAGGAGGGAGGGAG
GAGAGGGAGGGAAAAGGGGTCGGGAAAAGGAAGTGAAGATGAATCTGGCG
GTGGCATGTAAGTGCACCTCCATTTACTCCTTTCTTGTTTCCCCCCTTCC
CCCCCCAGCTGCTAATGCGCTGGTTCAAGCTGACGGTGGAGACCTTCGAG
AGCACCACGAACCCGCCCAACGGCTCCCTTGTGGTCATGACCCGCAAGGA
GGGTCCGGCAGGAGGGAGGTCGGGGGGAGGGGTGTACGAGATGGCGCCTG
AGTCTGCGGCCTTAATCTCGCTCAGCTGCGACTCGGTCCCCGTTGGCGCC
TCGCTCAATACTCCATGCAGCTTCGACGACAGCAGAGGGGGGGTGGAGGA
AGGGGAATGTGACAGAGAGTCAGCGAGGCCTCTTTCGGCCAGTATCCAAA
GCCTGTCCATTGCGAAGTAGCCTCGAAAGATTTTTTGGAGGGACGAAAGG
GTCTGCAAGTAGAAGAGAAGAGGGTTTGGAGAATCCCTACCCATGGAAAG
AGATCTAGGAAATCCATACAATGAACATACGATTAATTGCAGAATTCGAA
GGTGCACGCCATCTTCGTGCCTACAATAGAGATGAGG
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protein sequence of jgi.p|Nanoce1779_2|612349

>mRNA_10432-protein ID=mRNA_10432-protein|Name=jgi.p|Nanoce1779_2|612349|organism=Nannochloropsis oceanica|type=polypeptide|length=258bp
MFNKKRFTFLSGGSKEGGKDKAAETEYKVKGRAAPGHLPSLLQTHASSAF
SLVTPPIVPSPSPHQITKPHRIILVRHGESTGNADERVYVQTPDWKVPLS
PVGHEQARETGRQLKALIGDEPLYIYTSPYRRTKQTLSDMLESLEDNLKV
GIREEPRITEQQFGNFQCHQLVQQAKKDRSNFGRFYFRFPNGESGLDVYT
RVTSFISTMFRDFADGHICRPDLNIIIVTHGLTLRLVRHEGRGGREEREG
KGVGKRK*
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mRNA from alignment at scaffold_63:71104..73881+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10432 ID=mRNA_10432|Name=jgi.p|Nanoce1779_2|612349|organism=Nannochloropsis oceanica|type=mRNA|length=2778bp|location=Sequence derived from alignment at scaffold_63:71104..73881+ (Nannochloropsis oceanica)
GAGGAGGAGGAGGAGGAGGAGGGGGAGGAAATGGAGGACCGAGGCTACCC TCTCCCAAGAACATGTTCAACAAGAAGCGGTTTACATTCTTGTCGGGTGG GAGCAAAGAAGGAGGAAAAGATAAAGCCGCAGAGACGGAATATAAAGTGA AGGGGCGAGCGGCACCCGGGCATCTACCTTCGCTATTGCAAACACACGCC TCTTCGGCCTTTTCCCTCGTGACGCCTCCAATAGTGCCTTCGTGAGTCGA ACGGGGGGGATACCATGGGATGTGGGGGAATGAGGGGAGGATGTGAAAGA GAACGAGGACGAGGAGAAGTCATACGATAAGACAGAAGGCACATATACAA AAGCTGCTACTCCACCACTCTACCACTCTCCACCTCACGCTCCCTTCCTC CCTCCCCCTTTCTCTTCCGTTCAAAGCCCTTCCCCCCACCAGATCACCAA GCCCCACCGCATCATCCTCGTCCGTCATGGCGAGAGCACGGGCAATGCCG ACGAGCGCGTGTATGTCCAAACCCCTGATTGGAAGGTAGGGAGGGAGCGA GGGCGGGCGGGAGACGGCGGGCGAGCGGGAGGGAAGGAAAGATGATTCTT TTTTCCTGATGCCACAATCGTCCCTATACAATTTTCATTTGTACGTGACC GAGAATGAACCAATTATGTACGGGAGAATACACACCGTCCTTCTTGCGAC TGTAGCCCCTCGCTCTTCGCGGCTTTTCACCTCCCACCCTCCCCACCTGC CCAGGTCCCTCTATCCCCCGTCGGCCACGAGCAAGCCCGCGAGACCGGAC GGCAGCTCAAGGCGCTGATAGGGGACGAGCCGCTCTACATCTATACCTCA CCCTACAGACGGTGCGGCGGGAGGAAGGGAGGGAGGGAGGAATGTGGCGT GGTGATGAGTGCCCGTTCCGATCTTGTCCTGACGTCGGACTATCCTTTTC CTTGAGAGGTCTTGAGGACCCTTATGGAGGACCAAATACCCATTTTGCTC ATCCGCCTCCCTCCCTTACTCCCCCCCTTCCCGTCAGGACGAAGCAGACC CTGAGCGACATGTTGGAGTCGCTCGAGGACAATCTTAAGGTCGGCATCCG GGAGGAGCCGCGCATCACGGAGCAGGTCTACAAAAGGGAGGGGGGAGTGC GGGCTGTGGGGGGATCTGACCGGACGAGCACCCACAGCGAAATAGGAGAG CGAGACCGCCCTCCTCCTCACTTCCCTCCCTCCCTCCCTCCCTCCCTCCC TCCTCTTAGCAATTCGGCAACTTCCAATGCCACCAGCTGGTCCAGCAGGC AAAGAAGGATCGATCCAACTTCGGTCGCTTCTACTTCCGGTCAGCGCGGA GGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG GAGGGAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGA GGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG GAGGGAGGGAGGGAGGGAGGGAAGGAGGGAGGGAAGGAGGGAGGGAGGGA GGGAGGGAGGGAGGGAGATGGATTATGATGAAAATGACAAGGAAGAGGGG GACAAGCTTGGAGATCCGAGTAGAAAGGATGGATATCCGTAATAATCTTC CCTCAGCCTTCCCTCCCTCTCTCCCTTCCTCCGTCCCACCCATCCCCTTG CCATCAGGTTTCCAAACGGCGAGTCTGGCCTGGATGTGTACACGCGCGTG ACCTCCTTTATCTCAACCATGTTCAGGTGCAGGCGGGCAGGCAGGCAGAT AAAGAGGGAGGGAGAATGGGACGGAACCAACCTTATTGTATCATATCAAT ATGGCAAACATATTGAATCTTATTGTATCGTATCAATATGGTAAATATAT TGAATCACCTCAACAGGGACTTCGCGGATGGGCACATCTGTAGGCCCGAC CTGAACATCATCATCGTTACGCACGGCCTCACCCTCAGGCTGGTGCGCCA CGAGGGGAGAGGAGGGAGGGAGGAGAGGGAGGGAAAAGGGGTCGGGAAAA GGAAGTGAAGATGAATCTGGCGGTGGCATGTAAGTGCACCTCCATTTACT CCTTTCTTGTTTCCCCCCTTCCCCCCCCAGCTGCTAATGCGCTGGTTCAA GCTGACGGTGGAGACCTTCGAGAGCACCACGAACCCGCCCAACGGCTCCC TTGTGGTCATGACCCGCAAGGAGGGTCCGGCAGGAGGGAGGTCGGGGGGA GGGGTGTACGAGATGGCGCCTGAGTCTGCGGCCTTAATCTCGCTCAGGCA AGTGGGGAGGGGGGGGCGGAAAGGAGGGAAGGAGGGGGTAGAAGGGGCTG CAGGGCCACTGTGTGAGATGATTTCTCCTGTGGGCCGTATTCCTCTCCTT TGCACCGACCATCCATTGCCCTGCTCGATCGGTCTCACCTCTTCCTTGAT CTGACTACTCCCACAGCTGCGACTCGGTCCCCGTTGGCGCCTCGCTCAAT ACTCCATGCAGCTTCGACGACAGCAGAGGGGGGGTGGAGGAAGGGGAATG TGACAGAGAGTCAGCGAGGCCTCTTTCGGCCAGTATCCAAAGCCTGTCCA TTGCGAAGTAGCCTCGAAAGATTTTTTGGAGGGACGAAAGGGTCTGCAAG TAGAAGAGAAGAGGGTTTGGAGAATCCCTACCCATGGAAAGAGATCTAGG AAATCCATACAATGAACATACGATTAATTGCAGAATTCGAAGGTGCACGC CATCTTCGTGCCTACAATAGAGATGAGG
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Coding sequence (CDS) from alignment at scaffold_63:71104..73881+

>mRNA_10432 ID=mRNA_10432|Name=jgi.p|Nanoce1779_2|612349|organism=Nannochloropsis oceanica|type=CDS|length=5418bp|location=Sequence derived from alignment at scaffold_63:71104..73881+ (Nannochloropsis oceanica)
ATGTTCAACAAGAAGCGGTTTACATTCTTGTCGGGTGGGAGCAAAGAAGG
AGGAAAAGATAAAGCCGCAGAGACGGAATATAAAGTGAAGGGGCGAGCGG
CACCCGGGCATCTACCTTCGCTATTGCAAACACACGCCTCTTCGGCCTTT
TCCCTCGTGACGCCTCCAATAGTGCCTTCCCCTTCCCCCCACCAGATCAC
CAAGCCCCACCGCATCATCCTCGTCCGTCATGGCGAGAGCACGGGCAATG
CCGACGAGCGCGTGTATGTCCAAACCCCTGATTGGAAGGTCCCTCTATCC
CCCGTCGGCCACGAGCAAGCCCGCGAGACCGGACGGCAGCTCAAGGCGCT
GATAGGGGACGAGCCGCTCTACATCTATACCTCACCCTACAGACGGACGA
AGCAGACCCTGAGCGACATGTTGGAGTCGCTCGAGGACAATCTTAAGGTC
GGCATCCGGGAGGAGCCGCGCATCACGGAGCAGCAATTCGGCAACTTCCA
ATGCCACCAGCTGGTCCAGCAGGCAAAGAAGGATCGATCCAACTTCGGTC
GCTTCTACTTCCGGTTTCCAAACGGCGAGTCTGGCCTGGATGTGTACACG
CGCGTGACCTCCTTTATCTCAACCATGTTCAGGGACTTCGCGGATGGGCA
CATCTGTAGGCCCGACCTGAACATCATCATCGTTACGCACGGCCTCACCC
TCAGGCTGGTGCGCCACGAGGGGAGAGGAGGGAGGGAGGAGAGGGAGGGA
AAAGGGGTCGGGAAAAGGAAGTGAATGTTCAACAAGAAGCGGTTTACATT
CTTGTCGGGTGGGAGCAAAGAAGGAGGAAAAGATAAAGCCGCAGAGACGG
AATATAAAGTGAAGGGGCGAGCGGCACCCGGGCATCTACCTTCGCTATTG
CAAACACACGCCTCTTCGGCCTTTTCCCTCGTGACGCCTCCAATAGTGCC
TTCCCCTTCCCCCCACCAGATCACCAAGCCCCACCGCATCATCCTCGTCC
GTCATGGCGAGAGCACGGGCAATGCCGACGAGCGCGTGTATGTCCAAACC
CCTGATTGGAAGGTCCCTCTATCCCCCGTCGGCCACGAGCAAGCCCGCGA
GACCGGACGGCAGCTCAAGGCGCTGATAGGGGACGAGCCGCTCTACATCT
ATACCTCACCCTACAGACGGACGAAGCAGACCCTGAGCGACATGTTGGAG
TCGCTCGAGGACAATCTTAAGGTCGGCATCCGGGAGGAGCCGCGCATCAC
GGAGCAGCAATTCGGCAACTTCCAATGCCACCAGCTGGTCCAGCAGGCAA
AGAAGGATCGATCCAACTTCGGTCGCTTCTACTTCCGGTTTCCAAACGGC
GAGTCTGGCCTGGATGTGTACACGCGCGTGACCTCCTTTATCTCAACCAT
GTTCAGGGACTTCGCGGATGGGCACATCTGTAGGCCCGACCTGAACATCA
TCATCGTTACGCACGGCCTCACCCTCAGGCTGGTGCGCCACGAGGGGAGA
GGAGGGAGGGAGGAGAGGGAGGGAAAAGGGGTCGGGAAAAGGAAGTGAAT
GTTCAACAAGAAGCGGTTTACATTCTTGTCGGGTGGGAGCAAAGAAGGAG
GAAAAGATAAAGCCGCAGAGACGGAATATAAAGTGAAGGGGCGAGCGGCA
CCCGGGCATCTACCTTCGCTATTGCAAACACACGCCTCTTCGGCCTTTTC
CCTCGTGACGCCTCCAATAGTGCCTTCCCCTTCCCCCCACCAGATCACCA
AGCCCCACCGCATCATCCTCGTCCGTCATGGCGAGAGCACGGGCAATGCC
GACGAGCGCGTGTATGTCCAAACCCCTGATTGGAAGGTCCCTCTATCCCC
CGTCGGCCACGAGCAAGCCCGCGAGACCGGACGGCAGCTCAAGGCGCTGA
TAGGGGACGAGCCGCTCTACATCTATACCTCACCCTACAGACGGACGAAG
CAGACCCTGAGCGACATGTTGGAGTCGCTCGAGGACAATCTTAAGGTCGG
CATCCGGGAGGAGCCGCGCATCACGGAGCAGCAATTCGGCAACTTCCAAT
GCCACCAGCTGGTCCAGCAGGCAAAGAAGGATCGATCCAACTTCGGTCGC
TTCTACTTCCGGTTTCCAAACGGCGAGTCTGGCCTGGATGTGTACACGCG
CGTGACCTCCTTTATCTCAACCATGTTCAGGGACTTCGCGGATGGGCACA
TCTGTAGGCCCGACCTGAACATCATCATCGTTACGCACGGCCTCACCCTC
AGGCTGGTGCGCCACGAGGGGAGAGGAGGGAGGGAGGAGAGGGAGGGAAA
AGGGGTCGGGAAAAGGAAGTGAATGTTCAACAAGAAGCGGTTTACATTCT
TGTCGGGTGGGAGCAAAGAAGGAGGAAAAGATAAAGCCGCAGAGACGGAA
TATAAAGTGAAGGGGCGAGCGGCACCCGGGCATCTACCTTCGCTATTGCA
AACACACGCCTCTTCGGCCTTTTCCCTCGTGACGCCTCCAATAGTGCCTT
CCCCTTCCCCCCACCAGATCACCAAGCCCCACCGCATCATCCTCGTCCGT
CATGGCGAGAGCACGGGCAATGCCGACGAGCGCGTGTATGTCCAAACCCC
TGATTGGAAGGTCCCTCTATCCCCCGTCGGCCACGAGCAAGCCCGCGAGA
CCGGACGGCAGCTCAAGGCGCTGATAGGGGACGAGCCGCTCTACATCTAT
ACCTCACCCTACAGACGGACGAAGCAGACCCTGAGCGACATGTTGGAGTC
GCTCGAGGACAATCTTAAGGTCGGCATCCGGGAGGAGCCGCGCATCACGG
AGCAGCAATTCGGCAACTTCCAATGCCACCAGCTGGTCCAGCAGGCAAAG
AAGGATCGATCCAACTTCGGTCGCTTCTACTTCCGGTTTCCAAACGGCGA
GTCTGGCCTGGATGTGTACACGCGCGTGACCTCCTTTATCTCAACCATGT
TCAGGGACTTCGCGGATGGGCACATCTGTAGGCCCGACCTGAACATCATC
ATCGTTACGCACGGCCTCACCCTCAGGCTGGTGCGCCACGAGGGGAGAGG
AGGGAGGGAGGAGAGGGAGGGAAAAGGGGTCGGGAAAAGGAAGTGAATGT
TCAACAAGAAGCGGTTTACATTCTTGTCGGGTGGGAGCAAAGAAGGAGGA
AAAGATAAAGCCGCAGAGACGGAATATAAAGTGAAGGGGCGAGCGGCACC
CGGGCATCTACCTTCGCTATTGCAAACACACGCCTCTTCGGCCTTTTCCC
TCGTGACGCCTCCAATAGTGCCTTCCCCTTCCCCCCACCAGATCACCAAG
CCCCACCGCATCATCCTCGTCCGTCATGGCGAGAGCACGGGCAATGCCGA
CGAGCGCGTGTATGTCCAAACCCCTGATTGGAAGGTCCCTCTATCCCCCG
TCGGCCACGAGCAAGCCCGCGAGACCGGACGGCAGCTCAAGGCGCTGATA
GGGGACGAGCCGCTCTACATCTATACCTCACCCTACAGACGGACGAAGCA
GACCCTGAGCGACATGTTGGAGTCGCTCGAGGACAATCTTAAGGTCGGCA
TCCGGGAGGAGCCGCGCATCACGGAGCAGCAATTCGGCAACTTCCAATGC
CACCAGCTGGTCCAGCAGGCAAAGAAGGATCGATCCAACTTCGGTCGCTT
CTACTTCCGGTTTCCAAACGGCGAGTCTGGCCTGGATGTGTACACGCGCG
TGACCTCCTTTATCTCAACCATGTTCAGGGACTTCGCGGATGGGCACATC
TGTAGGCCCGACCTGAACATCATCATCGTTACGCACGGCCTCACCCTCAG
GCTGGTGCGCCACGAGGGGAGAGGAGGGAGGGAGGAGAGGGAGGGAAAAG
GGGTCGGGAAAAGGAAGTGAATGTTCAACAAGAAGCGGTTTACATTCTTG
TCGGGTGGGAGCAAAGAAGGAGGAAAAGATAAAGCCGCAGAGACGGAATA
TAAAGTGAAGGGGCGAGCGGCACCCGGGCATCTACCTTCGCTATTGCAAA
CACACGCCTCTTCGGCCTTTTCCCTCGTGACGCCTCCAATAGTGCCTTCC
CCTTCCCCCCACCAGATCACCAAGCCCCACCGCATCATCCTCGTCCGTCA
TGGCGAGAGCACGGGCAATGCCGACGAGCGCGTGTATGTCCAAACCCCTG
ATTGGAAGGTCCCTCTATCCCCCGTCGGCCACGAGCAAGCCCGCGAGACC
GGACGGCAGCTCAAGGCGCTGATAGGGGACGAGCCGCTCTACATCTATAC
CTCACCCTACAGACGGACGAAGCAGACCCTGAGCGACATGTTGGAGTCGC
TCGAGGACAATCTTAAGGTCGGCATCCGGGAGGAGCCGCGCATCACGGAG
CAGCAATTCGGCAACTTCCAATGCCACCAGCTGGTCCAGCAGGCAAAGAA
GGATCGATCCAACTTCGGTCGCTTCTACTTCCGGTTTCCAAACGGCGAGT
CTGGCCTGGATGTGTACACGCGCGTGACCTCCTTTATCTCAACCATGTTC
AGGGACTTCGCGGATGGGCACATCTGTAGGCCCGACCTGAACATCATCAT
CGTTACGCACGGCCTCACCCTCAGGCTGGTGCGCCACGAGGGGAGAGGAG
GGAGGGAGGAGAGGGAGGGAAAAGGGGTCGGGAAAAGGAAGTGAATGTTC
AACAAGAAGCGGTTTACATTCTTGTCGGGTGGGAGCAAAGAAGGAGGAAA
AGATAAAGCCGCAGAGACGGAATATAAAGTGAAGGGGCGAGCGGCACCCG
GGCATCTACCTTCGCTATTGCAAACACACGCCTCTTCGGCCTTTTCCCTC
GTGACGCCTCCAATAGTGCCTTCCCCTTCCCCCCACCAGATCACCAAGCC
CCACCGCATCATCCTCGTCCGTCATGGCGAGAGCACGGGCAATGCCGACG
AGCGCGTGTATGTCCAAACCCCTGATTGGAAGGTCCCTCTATCCCCCGTC
GGCCACGAGCAAGCCCGCGAGACCGGACGGCAGCTCAAGGCGCTGATAGG
GGACGAGCCGCTCTACATCTATACCTCACCCTACAGACGGACGAAGCAGA
CCCTGAGCGACATGTTGGAGTCGCTCGAGGACAATCTTAAGGTCGGCATC
CGGGAGGAGCCGCGCATCACGGAGCAGCAATTCGGCAACTTCCAATGCCA
CCAGCTGGTCCAGCAGGCAAAGAAGGATCGATCCAACTTCGGTCGCTTCT
ACTTCCGGTTTCCAAACGGCGAGTCTGGCCTGGATGTGTACACGCGCGTG
ACCTCCTTTATCTCAACCATGTTCAGGGACTTCGCGGATGGGCACATCTG
TAGGCCCGACCTGAACATCATCATCGTTACGCACGGCCTCACCCTCAGGC
TGGTGCGCCACGAGGGGAGAGGAGGGAGGGAGGAGAGGGAGGGAAAAGGG
GTCGGGAAAAGGAAGTGA
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Synonyms
Publications