jgi.p|Nanoce1779_2|615941, mRNA_11272 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|615941
Unique NamemRNA_11272
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length884
Alignment locationscaffold_110:16905..18512 +

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Properties
Property NameValue
TranscriptId616027
TrackFilteredModels2
ProteinId615941
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_110supercontigscaffold_110:16905..18512 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|615941gene_11272Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|615941mRNA_11272-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11272CDS_11272Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11272 ID=mRNA_11272|Name=jgi.p|Nanoce1779_2|615941|organism=Nannochloropsis oceanica|type=mRNA|length=884bp
ACAGCACTCAGAGAACACGCGTGACAAGGTCTCGGAGCGCCCGCAGGAAA
AGGCGCATCCCCGCCTTTTTGTCGGGTCGCGCCCCGCGTCATAATCCTCT
CGTCCCCTCCCCCTTCCCTTCACAAGCTCCAGCTAGCGAGGGCGACCTCC
AGCAGCACGCCAAGCCCCTGAGCCCTTCATAGTAGAGTTAGCGGTATACG
TCATCGTCGTCATGGGAGGTTTACTATCGCGCGTCCTCGACACTCTCTCG
GCCCTGGGTGGCAAGCAAGAGAAGCGCATTTTGATGCTGGGCCTGGACGC
AGCAGGCAAGACAACCATCCTGTACCGTTTGCAGCTGGGTGAGGACGTGC
ACTCCATTCCCACCATCGGGTTCAATGTGGAGACTGTCAGTTACAAGAAT
ATCTCATTCACCATCTGGGACGTGGGGGGGCAGGACCGACTGCGGAAGTT
GTGGCGGCACTACTACAAGGACAACGACGCCCTCATCTTCGTCATTGACT
CGGCCGACCGCGACCGTTTCGATGAGGCCAAGAACGAGCTCCTCTCCCTC
CTATCGGAGCAGCAGCTGACCGAAAGCGCCATCCTAGTCTTCGCGAACAA
GGCCGACCTCCCAACCGCCATTCCCGTCGTCCAAATCGCCCAAATGCTGC
AACTCGACAGGGTTGCCAAGGGCCGGCACTGGTACATCCAGCCTTCCTGT
GCCACCACGGGGGACGGGCTCGTGGAGGGCCTCGACTGGCTCTCGTCTAA
GCTCAAGGAACAAGGCCCGCGCCCGCCGAGCTCAGCTTAAGAGAGAGAGA
GGAAGAGGAGGGAGCGAGGGAGGGGTCTGTACATGGAAGGGAGTAGCTGC
TGATGAATGAGTAGGTCATTCTATGGCTTTCTTT
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protein sequence of jgi.p|Nanoce1779_2|615941

>mRNA_11272-protein ID=mRNA_11272-protein|Name=jgi.p|Nanoce1779_2|615941|organism=Nannochloropsis oceanica|type=polypeptide|length=193bp
MGGLLSRVLDTLSALGGKQEKRILMLGLDAAGKTTILYRLQLGEDVHSIP
TIGFNVETVSYKNISFTIWDVGGQDRLRKLWRHYYKDNDALIFVIDSADR
DRFDEAKNELLSLLSEQQLTESAILVFANKADLPTAIPVVQIAQMLQLDR
VAKGRHWYIQPSCATTGDGLVEGLDWLSSKLKEQGPRPPSSA*
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mRNA from alignment at scaffold_110:16905..18512+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11272 ID=mRNA_11272|Name=jgi.p|Nanoce1779_2|615941|organism=Nannochloropsis oceanica|type=mRNA|length=1608bp|location=Sequence derived from alignment at scaffold_110:16905..18512+ (Nannochloropsis oceanica)
ACAGCACTCAGAGAACACGCGTGACAAGGTCTCGGAGCGCCCGCAGGAAA
AGGCGCATCCCCGCCTTTTTGTCGGGTCGCGCCCCGCGTCATAATCCTCT
CGTCCCCTCCCCCTTCCCTTCACAAGCTCCAGCTAGCGAGGGCGACCTCC
AGCAGCACGCCAAGCCCCTGAGCCCTTCATAGTAGAGTTAGCGGTATACG
TCATCGTCGTCATGGGAGGTTTACTATCGCGCGTCCTCGACACTCTCTCG
GCCCTGGGTGGCAAGCAAGAGAAGCGCATTTTGTGAGTTTGGACAGGAAA
GGGAGGGAGGCAGGCAGGCAGGGAGGGAGGTAGAGATGATCGAAGGGATG
GGTGCGTGGACGGGTGGAATGACAACCATTATGTGGTGTCTCGCGGGGCG
GCTTACTGCAAGGGCGTTTATTGGGGAGGGTTGTGAGGATGTGCAGAACA
GGACAACGGACGTCGGGGGAAGAGAGAGCGTAGCACAGCGCACGGCACTG
CAGGACTTTCGCTATAAAAGTCTACACTTGGAGCATGGCTTTCTCTCACC
CACGGGTCACTTATTTCCTCCGCCTCTTCCTCATAACTCAACACAGGATG
CTGGGCCTGGACGCAGCAGGCAAGACAACCATCCTGTACCGTTTGCAGCT
GGGTGAGGACGTGCACTCCATTCCCACCATCGGGTTCAATGTGGAGACTG
TCAGTTACAAGAATATCTCATTCACCATCTGGGACGTGGGGGGGCAGGAC
CGACTGCGGAAGTTGTGGCGGCACTACTACAAGGACAACGACGCCCTCAT
CTTCGTCATTGACTCGGCCGACCGCGACGTACGTAATATGACTAGGATTC
ATTCCTCTTGGTCGCCCTCCTCCTCGCCCCCTCTTTCTCCTCACTCCATC
CTTAGCGTAGCCTTATGTCCCTTCTCCCTTCATTTTTCTTCGTTTCTATT
AATTTTAAAACCGCTTCCCTCCCTCCTCCATTCCTTCCCTCCTTTCCTCT
CCTCAGCGTTTCGATGAGGCCAAGAACGAGCTCCTCTCCCTCCTATCGGA
GCAGCAGCTGACCGAAAGCGCCATCCTAGTCTTCGCGAACAAGGCCGACC
TCCCAACCGCCATTCCCGTCGTCCAAATCGCCCAAATGCTGCAACTCGAC
AGGGTACGGTCGTCCGTTTTTTGATTTCAAGCAGCCGTTGCCCTCAATCC
GCTTCGTTCCTTTCCACCCGCACGCCCTTTTATTGTCTCACACGATGTGA
AATGAAGAGCCGCTGCTACCTTCTCCCCATGCACCGTAGTCAATGCGGTG
ATGCGACATATCTTGCTTTCCGCCTCTCACACTTACCACTCTCCCTCCCT
GTCCTCCTCCTTCCCTCCCTCCCCCCCTCCCTCAGGTTGCCAAGGGCCGG
CACTGGTACATCCAGCCTTCCTGTGCCACCACGGGGGACGGGCTCGTGGA
GGGCCTCGACTGGCTCTCGTCTAAGCTCAAGGAACAAGGCCCGCGCCCGC
CGAGCTCAGCTTAAGAGAGAGAGAGGAAGAGGAGGGAGCGAGGGAGGGGT
CTGTACATGGAAGGGAGTAGCTGCTGATGAATGAGTAGGTCATTCTATGG
CTTTCTTT
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Coding sequence (CDS) from alignment at scaffold_110:16905..18512+

>mRNA_11272 ID=mRNA_11272|Name=jgi.p|Nanoce1779_2|615941|organism=Nannochloropsis oceanica|type=CDS|length=2316bp|location=Sequence derived from alignment at scaffold_110:16905..18512+ (Nannochloropsis oceanica)
ATGGGAGGTTTACTATCGCGCGTCCTCGACACTCTCTCGGCCCTGGGTGG
CAAGCAAGAGAAGCGCATTTTGATGCTGGGCCTGGACGCAGCAGGCAAGA
CAACCATCCTGTACCGTTTGCAGCTGGGTGAGGACGTGCACTCCATTCCC
ACCATCGGGTTCAATGTGGAGACTGTCAGTTACAAGAATATCTCATTCAC
CATCTGGGACGTGGGGGGGCAGGACCGACTGCGGAAGTTGTGGCGGCACT
ACTACAAGGACAACGACGCCCTCATCTTCGTCATTGACTCGGCCGACCGC
GACCGTTTCGATGAGGCCAAGAACGAGCTCCTCTCCCTCCTATCGGAGCA
GCAGCTGACCGAAAGCGCCATCCTAGTCTTCGCGAACAAGGCCGACCTCC
CAACCGCCATTCCCGTCGTCCAAATCGCCCAAATGCTGCAACTCGACAGG
GTTGCCAAGGGCCGGCACTGGTACATCCAGCCTTCCTGTGCCACCACGGG
GGACGGGCTCGTGGAGGGCCTCGACTGGCTCTCGTCTAAGCTCAAGGAAC
AAGGCCCGCGCCCGCCGAGCTCAGCTTAAATGGGAGGTTTACTATCGCGC
GTCCTCGACACTCTCTCGGCCCTGGGTGGCAAGCAAGAGAAGCGCATTTT
GATGCTGGGCCTGGACGCAGCAGGCAAGACAACCATCCTGTACCGTTTGC
AGCTGGGTGAGGACGTGCACTCCATTCCCACCATCGGGTTCAATGTGGAG
ACTGTCAGTTACAAGAATATCTCATTCACCATCTGGGACGTGGGGGGGCA
GGACCGACTGCGGAAGTTGTGGCGGCACTACTACAAGGACAACGACGCCC
TCATCTTCGTCATTGACTCGGCCGACCGCGACCGTTTCGATGAGGCCAAG
AACGAGCTCCTCTCCCTCCTATCGGAGCAGCAGCTGACCGAAAGCGCCAT
CCTAGTCTTCGCGAACAAGGCCGACCTCCCAACCGCCATTCCCGTCGTCC
AAATCGCCCAAATGCTGCAACTCGACAGGGTTGCCAAGGGCCGGCACTGG
TACATCCAGCCTTCCTGTGCCACCACGGGGGACGGGCTCGTGGAGGGCCT
CGACTGGCTCTCGTCTAAGCTCAAGGAACAAGGCCCGCGCCCGCCGAGCT
CAGCTTAAATGGGAGGTTTACTATCGCGCGTCCTCGACACTCTCTCGGCC
CTGGGTGGCAAGCAAGAGAAGCGCATTTTGATGCTGGGCCTGGACGCAGC
AGGCAAGACAACCATCCTGTACCGTTTGCAGCTGGGTGAGGACGTGCACT
CCATTCCCACCATCGGGTTCAATGTGGAGACTGTCAGTTACAAGAATATC
TCATTCACCATCTGGGACGTGGGGGGGCAGGACCGACTGCGGAAGTTGTG
GCGGCACTACTACAAGGACAACGACGCCCTCATCTTCGTCATTGACTCGG
CCGACCGCGACCGTTTCGATGAGGCCAAGAACGAGCTCCTCTCCCTCCTA
TCGGAGCAGCAGCTGACCGAAAGCGCCATCCTAGTCTTCGCGAACAAGGC
CGACCTCCCAACCGCCATTCCCGTCGTCCAAATCGCCCAAATGCTGCAAC
TCGACAGGGTTGCCAAGGGCCGGCACTGGTACATCCAGCCTTCCTGTGCC
ACCACGGGGGACGGGCTCGTGGAGGGCCTCGACTGGCTCTCGTCTAAGCT
CAAGGAACAAGGCCCGCGCCCGCCGAGCTCAGCTTAAATGGGAGGTTTAC
TATCGCGCGTCCTCGACACTCTCTCGGCCCTGGGTGGCAAGCAAGAGAAG
CGCATTTTGATGCTGGGCCTGGACGCAGCAGGCAAGACAACCATCCTGTA
CCGTTTGCAGCTGGGTGAGGACGTGCACTCCATTCCCACCATCGGGTTCA
ATGTGGAGACTGTCAGTTACAAGAATATCTCATTCACCATCTGGGACGTG
GGGGGGCAGGACCGACTGCGGAAGTTGTGGCGGCACTACTACAAGGACAA
CGACGCCCTCATCTTCGTCATTGACTCGGCCGACCGCGACCGTTTCGATG
AGGCCAAGAACGAGCTCCTCTCCCTCCTATCGGAGCAGCAGCTGACCGAA
AGCGCCATCCTAGTCTTCGCGAACAAGGCCGACCTCCCAACCGCCATTCC
CGTCGTCCAAATCGCCCAAATGCTGCAACTCGACAGGGTTGCCAAGGGCC
GGCACTGGTACATCCAGCCTTCCTGTGCCACCACGGGGGACGGGCTCGTG
GAGGGCCTCGACTGGCTCTCGTCTAAGCTCAAGGAACAAGGCCCGCGCCC
GCCGAGCTCAGCTTAA
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Synonyms
Publications