jgi.p|Nanoce1779_2|675458, mRNA_11264 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|675458
Unique NamemRNA_11264
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length710
Alignment locationscaffold_110:14..1753 -

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Properties
Property NameValue
TranscriptId675544
TrackFilteredModels2
ProteinId675458
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_110supercontigscaffold_110:14..1753 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|675458gene_11264Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|675458mRNA_11264-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11264CDS_11264Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11264 ID=mRNA_11264|Name=jgi.p|Nanoce1779_2|675458|organism=Nannochloropsis oceanica|type=mRNA|length=710bp
ACAGTAAGTCAGCTACCAAAGGACAACCGCGAAGACGGCAGCGACATGCC
GGAGGGGCATGAGGTGATGCGGGCCATGGTGGGGGACGGCGCGGGCGATG
ACTTCAATGTCGGCGTTGATAAGTATAACCTAACTCACCGTGCGCCCTAT
CCTCCTATCCTATCCCTAACCCCAAACCCATAAGCCTTCTTGTGAGCCAA
ACAGCGATGTGCCCATCCACTTCTCCTGGACAATCTTCCTCTTCTGTTGG
TTGGGCAGGTTTTTCGATTTGCTTGATCTCGGCACGTACAAGCCAAATTT
ATGCATCTCACCCGTCTGTCCACGCTCCAACCCTCCTTATACCCCCACCG
CCCCCCATTTTCCCGCACCCACCTTCTTTCACTTTTCCTAGTACTCTTGG
GTTATGTGAAGGAAGAGGTCGTGGCAGAGTCAGGGATCAACGTGCGACAC
GAGGCCTGGATGCCAGCTGGTTGCCGGGTTTTTGGACGAGTGAGACAGCC
GCCTCCATCGCCGAGCCCGCCTGCCGGTGGGAGTACCTGATCGACCACAA
CATTAACCTCTGGTGCACTATGCTCGCTCGGTTTGGGGGCTCACGGCCGT
CTTCGGGCTTTACTGGCCGAGCTCTTCCCCCCTCAGCCCACAACTGCCAT
GATGGGAGCCGTCTGCAATTGTGCGCGAGGCGTGCAGTTCCTCTCCCCTG
TGGTAGTTGA
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protein sequence of jgi.p|Nanoce1779_2|675458

>mRNA_11264-protein ID=mRNA_11264-protein|Name=jgi.p|Nanoce1779_2|675458|organism=Nannochloropsis oceanica|type=polypeptide|length=168bp
MCPSTSPGQSSSSVGWAGFSICLISARTSQIYASHPSVHAPTLLIPPPPP
IFPHPPSFTFPSTLGLCEGRGRGRVRDQRATRGLDASWLPGFWTSETAAS
IAEPACRWEYLIDHNINLWCTMLARFGGSRPSSGFTGRALPPSAHNCHDG
SRLQLCARRAVPLPCGS*
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mRNA from alignment at scaffold_110:14..1753-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11264 ID=mRNA_11264|Name=jgi.p|Nanoce1779_2|675458|organism=Nannochloropsis oceanica|type=mRNA|length=1740bp|location=Sequence derived from alignment at scaffold_110:14..1753- (Nannochloropsis oceanica)
ACAGTAAGTCAGCTACCAAAGGACAACCGCGAAGACGGCAGCGACATGCC
GGAGGGGCATGAGGTGATGCGGGCCATGGTGGGGGACGGCGCGGGCGATG
ACTTCAATGTCGGCGTTGATAAGTATAACCTAACTCACCGTGCGCCCTAT
CCTCCTATCCTATCCCTAACCCCAAACCCATAAGCCTTCTTGTGAGCCAA
ACAGCGATGTGCCCATCCACTTCTCCTGGACAATCTTCCTCTTCTGTTGG
TTGGGCAGGTTTTTCGATTTGCTTGATCTCGGCACGTACAAGCCAAATTT
ATGCATCTCACCCGTCTGTCCACGCTCCAACCCTCCTTATACCCCCACCG
CCCCCCATTTTCCCGCACCCACCTTCTTTCACTTTTCCTAGTACTCTTGG
GTTATGTGAAGGAAGAGGTCGTGGCAGAGTCAGGGATCAACGTGCGACAC
GAGGCCTGGATGCCAGGTGAGAAGGGCCACGAGTAAGGCAGGGACACAAT
TCTAAATTGATGAACTCACAACGCCCACGCAGGACGCTTGTCCTTTTTTC
TAAATTGAATAATTAATCCACAAAACACGGTGAAAGTGTCTCGTCTCCCT
CCCCTTCATCGTGCTCCAACCCTCACATCAGGGACGGGGGGGGGTCGTTG
CAGGCCTTCTGGCCGACCGGATGGGCAAGCGCGACATCCTGGCAGTGACC
GTTTTAACCATCCCACCCCCAGGGAGGGAGAAAGGGAAGGAACGAGGTTC
ATTGGATGGCCATGTCTACCCATAAGCCGAGAGGGAGCGAGCGAAGGAGC
AGACGCTGCCTCTACTCGGGGGCCTAATGCGCAGAGGAAGCCTTTCATTT
CCGATCACCTTTTTCCGTCCTCCCATCTCACTCCTTACAACCACCGCTCC
TTTCCCGCCCTCTCCCCCCTCTGCAGCTGGTTGCCGGGTTTTTGGACGAG
TGAGGTCCACCGGGGCACGGCCGAGAGCTAAGCGTGGGTGCTCACTGCGC
AGTGTGGGCAAGCGATAGGCGGGAAGGCTGAATTGGAGGGAAGGAGGGGG
GAAGGAAAAGAGGGCGAATGAGCGAAGCAGCGCCAGCTAATGTCAACAAA
TCCTTACCTTCTCGCAAGCAGCTTTTCCTTCGGCTTCGTCTCGAATAGCT
TCAGTCGTCGTCCATCTGTTTCGCTTTACCGCCTCCTGGTACGTTCCGTC
CCTCCCTCCCCCCCTCCCTCCCTCCCTCCCTCCCCCCCTCCCTCTCTTGC
ACTCACCCGGCCGTCCGCCTCACAGACAGCCGCCTCCATCGCCGAGCCCG
CCTGCCGGTGGGAGTACCTGATCGACCACAACATTAACCTCTGGTGCACT
ATGCTCGCTCGGTACGTTCTTCTTAGGCACACCTTTTTGTCAAAGACTCT
TGTAATCACGACTTGCATCCCTTTCCTTTCCTTTCCTTCCTTTTTCTTCC
CTCTTTCCCGCCTTCCCTCCCTCCCTCCCTCCTTCCAGGTTTGGGGGCTC
ACGGCCGTCTTCGGGCTTTACTGGCCGAGCTCTTCCCCCCTCAGCCCACA
ACTGCCATGATGGGAGCCGTCTGCAATTGTGCGCGAGGCGTGCAGGTATG
GAGCAGGGGGAGGGAGGGGGAGGGGGAGGACGTGGGATCACCTGTGATGG
CACGAGACAAATTACTTCTTTTTCCCCTTCCTCGTCTTTCTTCCCTCCCT
CCTTTCCTCCTCTCTAGTTCCTCTCCCCTGTGGTAGTTGA
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Coding sequence (CDS) from alignment at scaffold_110:14..1753-

>mRNA_11264 ID=mRNA_11264|Name=jgi.p|Nanoce1779_2|675458|organism=Nannochloropsis oceanica|type=CDS|length=2520bp|location=Sequence derived from alignment at scaffold_110:14..1753- (Nannochloropsis oceanica)
TTCCTCTCCCCTGTGGTAGTTGAGTTTGGGGGCTCACGGCCGTCTTCGGG
CTTTACTGGCCGAGCTCTTCCCCCCTCAGCCCACAACTGCCATGATGGGA
GCCGTCTGCAATTGTGCGCGAGGCGTGCAGACAGCCGCCTCCATCGCCGA
GCCCGCCTGCCGGTGGGAGTACCTGATCGACCACAACATTAACCTCTGGT
GCACTATGCTCGCTCGCTGGTTGCCGGGTTTTTGGACGAGTGAGATGTGC
CCATCCACTTCTCCTGGACAATCTTCCTCTTCTGTTGGTTGGGCAGGTTT
TTCGATTTGCTTGATCTCGGCACGTACAAGCCAAATTTATGCATCTCACC
CGTCTGTCCACGCTCCAACCCTCCTTATACCCCCACCGCCCCCCATTTTC
CCGCACCCACCTTCTTTCACTTTTCCTAGTACTCTTGGGTTATGTGAAGG
AAGAGGTCGTGGCAGAGTCAGGGATCAACGTGCGACACGAGGCCTGGATG
CCAGTTCCTCTCCCCTGTGGTAGTTGAGTTTGGGGGCTCACGGCCGTCTT
CGGGCTTTACTGGCCGAGCTCTTCCCCCCTCAGCCCACAACTGCCATGAT
GGGAGCCGTCTGCAATTGTGCGCGAGGCGTGCAGACAGCCGCCTCCATCG
CCGAGCCCGCCTGCCGGTGGGAGTACCTGATCGACCACAACATTAACCTC
TGGTGCACTATGCTCGCTCGCTGGTTGCCGGGTTTTTGGACGAGTGAGAT
GTGCCCATCCACTTCTCCTGGACAATCTTCCTCTTCTGTTGGTTGGGCAG
GTTTTTCGATTTGCTTGATCTCGGCACGTACAAGCCAAATTTATGCATCT
CACCCGTCTGTCCACGCTCCAACCCTCCTTATACCCCCACCGCCCCCCAT
TTTCCCGCACCCACCTTCTTTCACTTTTCCTAGTACTCTTGGGTTATGTG
AAGGAAGAGGTCGTGGCAGAGTCAGGGATCAACGTGCGACACGAGGCCTG
GATGCCAGTTCCTCTCCCCTGTGGTAGTTGAGTTTGGGGGCTCACGGCCG
TCTTCGGGCTTTACTGGCCGAGCTCTTCCCCCCTCAGCCCACAACTGCCA
TGATGGGAGCCGTCTGCAATTGTGCGCGAGGCGTGCAGACAGCCGCCTCC
ATCGCCGAGCCCGCCTGCCGGTGGGAGTACCTGATCGACCACAACATTAA
CCTCTGGTGCACTATGCTCGCTCGCTGGTTGCCGGGTTTTTGGACGAGTG
AGATGTGCCCATCCACTTCTCCTGGACAATCTTCCTCTTCTGTTGGTTGG
GCAGGTTTTTCGATTTGCTTGATCTCGGCACGTACAAGCCAAATTTATGC
ATCTCACCCGTCTGTCCACGCTCCAACCCTCCTTATACCCCCACCGCCCC
CCATTTTCCCGCACCCACCTTCTTTCACTTTTCCTAGTACTCTTGGGTTA
TGTGAAGGAAGAGGTCGTGGCAGAGTCAGGGATCAACGTGCGACACGAGG
CCTGGATGCCAGTTCCTCTCCCCTGTGGTAGTTGAGTTTGGGGGCTCACG
GCCGTCTTCGGGCTTTACTGGCCGAGCTCTTCCCCCCTCAGCCCACAACT
GCCATGATGGGAGCCGTCTGCAATTGTGCGCGAGGCGTGCAGACAGCCGC
CTCCATCGCCGAGCCCGCCTGCCGGTGGGAGTACCTGATCGACCACAACA
TTAACCTCTGGTGCACTATGCTCGCTCGCTGGTTGCCGGGTTTTTGGACG
AGTGAGATGTGCCCATCCACTTCTCCTGGACAATCTTCCTCTTCTGTTGG
TTGGGCAGGTTTTTCGATTTGCTTGATCTCGGCACGTACAAGCCAAATTT
ATGCATCTCACCCGTCTGTCCACGCTCCAACCCTCCTTATACCCCCACCG
CCCCCCATTTTCCCGCACCCACCTTCTTTCACTTTTCCTAGTACTCTTGG
GTTATGTGAAGGAAGAGGTCGTGGCAGAGTCAGGGATCAACGTGCGACAC
GAGGCCTGGATGCCAGTTCCTCTCCCCTGTGGTAGTTGAGTTTGGGGGCT
CACGGCCGTCTTCGGGCTTTACTGGCCGAGCTCTTCCCCCCTCAGCCCAC
AACTGCCATGATGGGAGCCGTCTGCAATTGTGCGCGAGGCGTGCAGACAG
CCGCCTCCATCGCCGAGCCCGCCTGCCGGTGGGAGTACCTGATCGACCAC
AACATTAACCTCTGGTGCACTATGCTCGCTCGCTGGTTGCCGGGTTTTTG
GACGAGTGAGATGTGCCCATCCACTTCTCCTGGACAATCTTCCTCTTCTG
TTGGTTGGGCAGGTTTTTCGATTTGCTTGATCTCGGCACGTACAAGCCAA
ATTTATGCATCTCACCCGTCTGTCCACGCTCCAACCCTCCTTATACCCCC
ACCGCCCCCCATTTTCCCGCACCCACCTTCTTTCACTTTTCCTAGTACTC
TTGGGTTATGTGAAGGAAGAGGTCGTGGCAGAGTCAGGGATCAACGTGCG
ACACGAGGCCTGGATGCCAG
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Synonyms
Publications