jgi.p|Nanoce1779_2|632241, mRNA_7406 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|632241
Unique Name	mRNA_7406
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1648
Alignment location	scaffold_19:434272..436217 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	632327
Track	FilteredModels2
ProteinId	632241

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_19	supercontig	scaffold_19:434272..436217 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|632241	gene_7406	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|632241	mRNA_7406-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7406	CDS_7406	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_19:434272..436217+
coding sequence from alignment at scaffold_19:434272..436217+

mRNA sequence

>mRNA_7406 ID=mRNA_7406|Name=jgi.p|Nanoce1779_2|632241|organism=Nannochloropsis oceanica|type=mRNA|length=1648bp
CCTGCTCACATTCTGTCGTGTGTCCGCAAAAGTGTCTTGAGGAGATAGAT
ACCTGCCTTGTCGAACCCCATGGAACCAGAAGGCGTCACTTTGTGTTTCT
ACTTCCAGCTGTCTACCAGAGAGCAGAGTAAATCCCATAGTAGGAAAGGT
ATAGACTAGAAAGATTGAATCATGATGTGTATGCAAAAAGTGGCCCGCGC
GTTCCCGAAAAGAGGAAGTCCTCTTTCAGTGCAAGACAAAAGTCTTCCTG
CCAAGTTCACGTTCCGAGGAACATCGCAGACGCACGTTACTCGAGCAACG
GGCCCCAGGCTTGTCTGTCTCATCACACTCATTATCACGCCTACGCCACC
ACACCTTCGTTTTAATCTCACTGACCCTCCTACATATTGTATCTCGAACG
CTCAGGAGGTAACATCTTCGCTTGGGACCTCTCAGGCATCGGCGCAAGCA
TCCTCATTATGGCCGACGATGAGACCACCGCAAACACTTCCCCTCCCCCG
GCAGTTGACGCCACCACCGCCGCCACCACCGCCGCCGCAGCCGCGACTAG
CTGGTTCGATAGCTTGGGTGTGGACATTGGCAAGGCCCTGGAGACTGCCC
GGGAACAAGTGGTCAAGGCTGCTGAGGATGCCACGCCTGCCTGGTCTTCA
GCCATGGATGCAGTGAAGCAACATGCCGCCAGATTTAAAGAGGAAGCAGT
GCACGCGGCCCAATCCTTGCAGCAAGTCGCGGTGAATGCGACCCAAGATA
TTGAAGCCGAACAAGCGCGCGTCAAAGCGTCTTCTGTCACTGATCTCCCG
CCTTCCTCTCTAGTGACTTTGCTCCCCTGGGAGACAGCCGATGAGAGTCA
GTCGATTCTATCGCAGGTCTTGCTGGATCAGATCCTGGCATTGTCTCACG
ATGACCGAACTTTCGACCCCTTACATGACGAAGAGAAGAGACAATTTCCA
AATTTCAAATTGGAGAATTACGTTGAAGTGATCACGAGACTGCTGGCCTT
AGACCCAGCCTTAGGTAAGATGCATGCGAAATATGGCGGGAAGGGGAAGG
AGGAAGGGGCTTTTTGGCAGTCGTATTTTTACAGGTGTGCGTGTTTGAGG
GTAGGGTGCGGGATGGGGGGAGGGAGGGAGGCAAGAGGGGGAGGAGTGGG
GTATGAGATCATTGGTGACCCTGTCGTGATGCCTGTGGTGGAGGGAAATG
AGAACGGGGGATGTAGAGAGAAAGTGAAGGAGGGGAAGGGGGGGAGAAAA
GAGTCGGCAGCTCGGTTGTCGTCGTCGGGAGGAGTGAAGGAGTCCAAGGA
ATCGACTTCCTCGCCAGCGAAGTCGCCATCAGGATCAGTAGCTACAAAAG
AAAGAGAAGCAGCCGTAGCAGTAGCTGCAGAGGAAAAGGGGAAGGAGGAA
GTGGGGGTAGAAGGAGAAGGAGGAGGGGATGGAGATAGCATGAATTTGGA
TGGACTAAACTTGAGTGATGATGAGGAGGGAGGGGACGCGTTGGAAGGCG
ATGCGCTATTGGAGCTTGAGGCTCAGATTGCGGCGGAGCTAGGGGAGGAT
GAAGAATGAGAGCAAGACAGATATCTGTAATGATAAATACATTAGAGAAA
AATAAGGTATGATTGTATTCTGACAACGCGTGATTTAAATTGATCGAG

protein sequence of jgi.p|Nanoce1779_2|632241

>mRNA_7406-protein ID=mRNA_7406-protein|Name=jgi.p|Nanoce1779_2|632241|organism=Nannochloropsis oceanica|type=polypeptide|length=367bp
MADDETTANTSPPPAVDATTAATTAAAAATSWFDSLGVDIGKALETAREQ
VVKAAEDATPAWSSAMDAVKQHAARFKEEAVHAAQSLQQVAVNATQDIEA
EQARVKASSVTDLPPSSLVTLLPWETADESQSILSQVLLDQILALSHDDR
TFDPLHDEEKRQFPNFKLENYVEVITRLLALDPALGKMHAKYGGKGKEEG
AFWQSYFYRCACLRVGCGMGGGREARGGGVGYEIIGDPVVMPVVEGNENG
GCREKVKEGKGGRKESAARLSSSGGVKESKESTSSPAKSPSGSVATKERE
AAVAVAAEEKGKEEVGVEGEGGGDGDSMNLDGLNLSDDEEGGDALEGDAL
LELEAQIAAELGEDEE*

mRNA from alignment at scaffold_19:434272..436217+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7406 ID=mRNA_7406|Name=jgi.p|Nanoce1779_2|632241|organism=Nannochloropsis oceanica|type=mRNA|length=1946bp|location=Sequence derived from alignment at scaffold_19:434272..436217+ (Nannochloropsis oceanica)
CCTGCTCACATTCTGTCGTGTGTCCGCAAAAGTGTCTTGAGGAGATAGAT
ACCTGCCTTGTCGAACCCCATGGAACCAGAAGGCGTCACTTTGTGTTTCT
ACTTCCAGCTGTCTACCAGAGAGCAGAGTAAATCCCATAGTAGGAAAGGT
ATAGACTAGAAAGATTGAATCATGATGTGTATGCAAAAAGTGGCCCGCGC
GTTCCCGAAAAGAGGAAGTCCTCTTTCAGTGCAAGACAAAAGTCTTCCTG
CCAAGTTCACGTTCCGAGGAACATCGCAGACGCACGTTACTCGAGCAACG
GGCCCCAGGCTTGTCTGTCTCATCACACTCATTATCACGCCTACGCCACC
ACACCTTCGTTTTAATCTCACTGACCCTCCTACATATTGTATCTCGAACG
CTCAGGAGGTAACATCTTCGCTTGGGACCTCTCAGGCATCGGCGCAAGCA
TCCTCATTATGGCCGACGATGAGACCACCGCAAACACTTCCCCTCCCCCG
GCAGTTGACGCCACCACCGCCGCCACCACCGCCGCCGCAGCCGCGACTAG
CTGGTTCGATAGCTTGGGTGTGGACATTGGCAAGGCCCTGGAGACTGCCC
GGGAACAAGTGGTCAAGGCTGCTGAGGTACGTAATTGACGGGAGAGGCAA
GCAGCATTATCCGCCCAAAGCGCCTGGCCCTTAACTCTTAAATCGCACAC
CCACAGGATGCCACGCCTGCCTGGTCTTCAGCCATGGATGCAGTGAAGCA
ACATGCCGCCAGATTTAAAGAGGTAAGGTATTATAGCTTTCTTCCTTGCT
TTCCGGATCCCCTCTAGTTCTCACTTACCCTCATCTCTCGGCAGCACAGC
CGTCAAAAAGTGCCTTACTTCCGCAACGTATCGCACTTATCCATCCGCAC
CGCCTTTGTTTTCTATCATCTCGCTTATGCACAAGGGTGTTCAACCCTCT
ATCCCTCGTTCTTTTCATCCCTCACTTCCTCCCGCAACAGGAAGCAGTGC
ACGCGGCCCAATCCTTGCAGCAAGTCGCGGTGAATGCGACCCAAGATATT
GAAGCCGAACAAGCGCGCGTCAAAGCGTCTTCTGTCACTGATCTCCCGCC
TTCCTCTCTAGTGACTTTGCTCCCCTGGGAGACAGCCGATGAGAGTCAGT
CGATTCTATCGCAGGTCTTGCTGGATCAGATCCTGGCATTGTCTCACGAT
GACCGAACTTTCGACCCCTTACATGACGAAGAGAAGAGACAATTTCCAAA
TTTCAAATTGGAGAATTACGTTGAAGTGATCACGAGACTGCTGGCCTTAG
ACCCAGCCTTAGGTAAGATGCATGCGAAATATGGCGGGAAGGGGAAGGAG
GAAGGGGCTTTTTGGCAGTCGTATTTTTACAGGTGTGCGTGTTTGAGGGT
AGGGTGCGGGATGGGGGGAGGGAGGGAGGCAAGAGGGGGAGGAGTGGGGT
ATGAGATCATTGGTGACCCTGTCGTGATGCCTGTGGTGGAGGGAAATGAG
AACGGGGGATGTAGAGAGAAAGTGAAGGAGGGGAAGGGGGGGAGAAAAGA
GTCGGCAGCTCGGTTGTCGTCGTCGGGAGGAGTGAAGGAGTCCAAGGAAT
CGACTTCCTCGCCAGCGAAGTCGCCATCAGGATCAGTAGCTACAAAAGAA
AGAGAAGCAGCCGTAGCAGTAGCTGCAGAGGAAAAGGGGAAGGAGGAAGT
GGGGGTAGAAGGAGAAGGAGGAGGGGATGGAGATAGCATGAATTTGGATG
GACTAAACTTGAGTGATGATGAGGAGGGAGGGGACGCGTTGGAAGGCGAT
GCGCTATTGGAGCTTGAGGCTCAGATTGCGGCGGAGCTAGGGGAGGATGA
AGAATGAGAGCAAGACAGATATCTGTAATGATAAATACATTAGAGAAAAA
TAAGGTATGATTGTATTCTGACAACGCGTGATTTAAATTGATCGAG

Coding sequence (CDS) from alignment at scaffold_19:434272..436217+

>mRNA_7406 ID=mRNA_7406|Name=jgi.p|Nanoce1779_2|632241|organism=Nannochloropsis oceanica|type=CDS|length=3303bp|location=Sequence derived from alignment at scaffold_19:434272..436217+ (Nannochloropsis oceanica)
ATGGCCGACGATGAGACCACCGCAAACACTTCCCCTCCCCCGGCAGTTGA
CGCCACCACCGCCGCCACCACCGCCGCCGCAGCCGCGACTAGCTGGTTCG
ATAGCTTGGGTGTGGACATTGGCAAGGCCCTGGAGACTGCCCGGGAACAA
GTGGTCAAGGCTGCTGAGGATGCCACGCCTGCCTGGTCTTCAGCCATGGA
TGCAGTGAAGCAACATGCCGCCAGATTTAAAGAGGAAGCAGTGCACGCGG
CCCAATCCTTGCAGCAAGTCGCGGTGAATGCGACCCAAGATATTGAAGCC
GAACAAGCGCGCGTCAAAGCGTCTTCTGTCACTGATCTCCCGCCTTCCTC
TCTAGTGACTTTGCTCCCCTGGGAGACAGCCGATGAGAGTCAGTCGATTC
TATCGCAGGTCTTGCTGGATCAGATCCTGGCATTGTCTCACGATGACCGA
ACTTTCGACCCCTTACATGACGAAGAGAAGAGACAATTTCCAAATTTCAA
ATTGGAGAATTACGTTGAAGTGATCACGAGACTGCTGGCCTTAGACCCAG
CCTTAGGTAAGATGCATGCGAAATATGGCGGGAAGGGGAAGGAGGAAGGG
GCTTTTTGGCAGTCGTATTTTTACAGGTGTGCGTGTTTGAGGGTAGGGTG
CGGGATGGGGGGAGGGAGGGAGGCAAGAGGGGGAGGAGTGGGGTATGAGA
TCATTGGTGACCCTGTCGTGATGCCTGTGGTGGAGGGAAATGAGAACGGG
GGATGTAGAGAGAAAGTGAAGGAGGGGAAGGGGGGGAGAAAAGAGTCGGC
AGCTCGGTTGTCGTCGTCGGGAGGAGTGAAGGAGTCCAAGGAATCGACTT
CCTCGCCAGCGAAGTCGCCATCAGGATCAGTAGCTACAAAAGAAAGAGAA
GCAGCCGTAGCAGTAGCTGCAGAGGAAAAGGGGAAGGAGGAAGTGGGGGT
AGAAGGAGAAGGAGGAGGGGATGGAGATAGCATGAATTTGGATGGACTAA
ACTTGAGTGATGATGAGGAGGGAGGGGACGCGTTGGAAGGCGATGCGCTA
TTGGAGCTTGAGGCTCAGATTGCGGCGGAGCTAGGGGAGGATGAAGAATG
AATGGCCGACGATGAGACCACCGCAAACACTTCCCCTCCCCCGGCAGTTG
ACGCCACCACCGCCGCCACCACCGCCGCCGCAGCCGCGACTAGCTGGTTC
GATAGCTTGGGTGTGGACATTGGCAAGGCCCTGGAGACTGCCCGGGAACA
AGTGGTCAAGGCTGCTGAGGATGCCACGCCTGCCTGGTCTTCAGCCATGG
ATGCAGTGAAGCAACATGCCGCCAGATTTAAAGAGGAAGCAGTGCACGCG
GCCCAATCCTTGCAGCAAGTCGCGGTGAATGCGACCCAAGATATTGAAGC
CGAACAAGCGCGCGTCAAAGCGTCTTCTGTCACTGATCTCCCGCCTTCCT
CTCTAGTGACTTTGCTCCCCTGGGAGACAGCCGATGAGAGTCAGTCGATT
CTATCGCAGGTCTTGCTGGATCAGATCCTGGCATTGTCTCACGATGACCG
AACTTTCGACCCCTTACATGACGAAGAGAAGAGACAATTTCCAAATTTCA
AATTGGAGAATTACGTTGAAGTGATCACGAGACTGCTGGCCTTAGACCCA
GCCTTAGGTAAGATGCATGCGAAATATGGCGGGAAGGGGAAGGAGGAAGG
GGCTTTTTGGCAGTCGTATTTTTACAGGTGTGCGTGTTTGAGGGTAGGGT
GCGGGATGGGGGGAGGGAGGGAGGCAAGAGGGGGAGGAGTGGGGTATGAG
ATCATTGGTGACCCTGTCGTGATGCCTGTGGTGGAGGGAAATGAGAACGG
GGGATGTAGAGAGAAAGTGAAGGAGGGGAAGGGGGGGAGAAAAGAGTCGG
CAGCTCGGTTGTCGTCGTCGGGAGGAGTGAAGGAGTCCAAGGAATCGACT
TCCTCGCCAGCGAAGTCGCCATCAGGATCAGTAGCTACAAAAGAAAGAGA
AGCAGCCGTAGCAGTAGCTGCAGAGGAAAAGGGGAAGGAGGAAGTGGGGG
TAGAAGGAGAAGGAGGAGGGGATGGAGATAGCATGAATTTGGATGGACTA
AACTTGAGTGATGATGAGGAGGGAGGGGACGCGTTGGAAGGCGATGCGCT
ATTGGAGCTTGAGGCTCAGATTGCGGCGGAGCTAGGGGAGGATGAAGAAT
GAATGGCCGACGATGAGACCACCGCAAACACTTCCCCTCCCCCGGCAGTT
GACGCCACCACCGCCGCCACCACCGCCGCCGCAGCCGCGACTAGCTGGTT
CGATAGCTTGGGTGTGGACATTGGCAAGGCCCTGGAGACTGCCCGGGAAC
AAGTGGTCAAGGCTGCTGAGGATGCCACGCCTGCCTGGTCTTCAGCCATG
GATGCAGTGAAGCAACATGCCGCCAGATTTAAAGAGGAAGCAGTGCACGC
GGCCCAATCCTTGCAGCAAGTCGCGGTGAATGCGACCCAAGATATTGAAG
CCGAACAAGCGCGCGTCAAAGCGTCTTCTGTCACTGATCTCCCGCCTTCC
TCTCTAGTGACTTTGCTCCCCTGGGAGACAGCCGATGAGAGTCAGTCGAT
TCTATCGCAGGTCTTGCTGGATCAGATCCTGGCATTGTCTCACGATGACC
GAACTTTCGACCCCTTACATGACGAAGAGAAGAGACAATTTCCAAATTTC
AAATTGGAGAATTACGTTGAAGTGATCACGAGACTGCTGGCCTTAGACCC
AGCCTTAGGTAAGATGCATGCGAAATATGGCGGGAAGGGGAAGGAGGAAG
GGGCTTTTTGGCAGTCGTATTTTTACAGGTGTGCGTGTTTGAGGGTAGGG
TGCGGGATGGGGGGAGGGAGGGAGGCAAGAGGGGGAGGAGTGGGGTATGA
GATCATTGGTGACCCTGTCGTGATGCCTGTGGTGGAGGGAAATGAGAACG
GGGGATGTAGAGAGAAAGTGAAGGAGGGGAAGGGGGGGAGAAAAGAGTCG
GCAGCTCGGTTGTCGTCGTCGGGAGGAGTGAAGGAGTCCAAGGAATCGAC
TTCCTCGCCAGCGAAGTCGCCATCAGGATCAGTAGCTACAAAAGAAAGAG
AAGCAGCCGTAGCAGTAGCTGCAGAGGAAAAGGGGAAGGAGGAAGTGGGG
GTAGAAGGAGAAGGAGGAGGGGATGGAGATAGCATGAATTTGGATGGACT
AAACTTGAGTGATGATGAGGAGGGAGGGGACGCGTTGGAAGGCGATGCGC
TATTGGAGCTTGAGGCTCAGATTGCGGCGGAGCTAGGGGAGGATGAAGAA
TGA

Synonyms

Publications