jgi.p|Nanoce1779_2|228685, mRNA_37 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|228685
Unique Name	mRNA_37
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2096
Alignment location	scaffold_3:108013..110320 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	228771
Track	FilteredModels2
ProteinId	228685

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:108013..110320 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|228685	gene_37	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|228685	mRNA_37-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_37	CDS_37	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:108013..110320+
coding sequence from alignment at scaffold_3:108013..110320+

mRNA sequence

>mRNA_37 ID=mRNA_37|Name=jgi.p|Nanoce1779_2|228685|organism=Nannochloropsis oceanica|type=mRNA|length=2096bp
CCGGCGGGGGGTGATCTAATCTCATGATGATGGTAGTGCTGACCAGGCAT
TGAAAAAAGAGGATAAAGGGGTCGTGTAGGTGTCACGGCTTGACAAGGCG
AGAAGAAGCAGGGGTGGCGAGTGGGGAGGCTGACGCTCCGCCGCCTGTTG
TAGGAGGGTAACAGGCAGGGGGGAATGGAAGACACAGGTAGAACATATCA
CGTTAAAGTGTCCGCCGTCGTCTCAAAAGTATCTGTGTGTGTGTGTGACA
TTCACTGCACCCAAACCAGAGGACGCGAGCTCACAAAGCAATCGCGGTGG
CGAGTGACAGACATCGACAAAACCTCGACAACGCGGGCTTGGACTCCTCC
AATACCACCGGCGAGTCTAGGCTGCCCCTTGCTGTGTGGTTCTTCACGTC
CTCCGTCCTTTCTCTTTGTAATCATGCAGTCGCCCACTTACTGGCTCGCC
CCCCGTCGCTTTTCCACGCTACAGCCACCCACCAAATCACAGGACGGGCT
TCGATTCGACACATCGAATCAAAGGAGGATACTTCTCCCAGGCTGTCGCT
CTTGCTGTAGGTTGCCGTTGCCGTGGGCCCCCCTTAAAAGCCGCATGGGG
ACGCCAACAACGCCGTCCACGCCCCAACGAAATGGTGAGCGGCTCGAGAC
CCGACCCTTGGACACGTCGAGCGACAAAGTAAATGGTGGCGCCGGCGGCA
GCAAAACCCGTGAGGTCTCGGCATCCATCTCGGCCGATTTATTAGGCTAC
TTCCTCGCGGTACTCATTCTCCTAAACTTCTGGTCGGCCGCATTTTTGGA
ACTAGTCATGTACGTGGTGTTTGCGCCGATGTATCCACCAATATGGCACG
CAACCCGCATCCTTGGCGTTCGCTTCGGCTGGCTCCCCCCTATGATCTTC
CTCAAGTGGGCCAACATTCGACTGCGGGTCACAGGGCACGCTGCAGCAGC
TTCTGGCCTGGGGACCATGCCTTCTTCTTCCTCCTCCTCCTGGTCCTCGT
CATGGCAACGGTACATCGACCTTTTCACCCCCGGCAAGCTTCCCCGTGCC
TTGATCATGATCAACCACCTCTCGTGGGCAGATTCCTTCGTCCTCTCCCC
TTGGCTGCATGCCCACAACAGCGTCAACGGCGATACCTGTTGGCCAATGT
GGCGGGGGTTCATCAACATGCCCTTGGGATGGATTGCCTACATGTCAGAA
TGCCCTGTTTTAGGGTACGGGAAAGAGATGGACCTCGAGACAATCCGCAA
GAGCGTTTCGCGTTTTTTTCAACGGAGGATGACGAAGTTTTTCCTCTTCC
CCGAGGGCGCCGTTTTTCGGGAATGTATGCTTCAGAAATCCCACGAATAC
GCCCAAGCTAACAACCTTCCCCTGCTCGATCACTGCCTGCTGCCAAAGCA
CGGTGCCTTCCTCGAGGCTGGCCAAGCGCTGCATCGGCAGGGAATGGAGA
CACTAGTGGACATAACCATTGCCTACCCCCCAACTTCCTCCCTGTACAAT
GCACCTTTCAATGTCATAGACTTGGTCAAATATCATCCAACGCCACTGTA
TGTGCATTTGAATGTGCGGACGTTCGATATGCGGGAGATCCCCTGGGAGG
AGGAGGATAAGGTGCGGCAGTGGCTTACGCGTCGGTTTGAAGAGAAGGAT
CGTTTCTTGGACGATTACTACAAGGGAAAGGGAGGGGTAATGGTGGAGGG
GGGGAAGGAGGAAGGGCCCCGATGGAGAGATTTGGCATTGGATGTACTGC
TGTGGATGGGGGTACAAGTGGTCATGTATACAGTTAATGTGTGAGCGCAG
CCTTGTGCCTACGTGGGGCCTGATGACATGACGATAAGAGTAAAGAAGAG
TATGAGAAGATGCGACAAGATTCATGGCCTGTCGTTGTCAGGAGGCACTG
GAAGGGACGGGAAGGGAGAGGGCGGCTTTTGAAAAGATGTAGTGTGTGAA
ATGCGCGAATCGAGTAAGTTAATTTGTAACAACCGTCCAAGAAAAGAGAC
GAAGAGAGGTGCCGTTTGGAAAGAAGCCTGATACAAGCGAAAGGAAGGAA
AGATTAGAACGAAAAGAAGAAGACGTGATGGTACCTACGACTCCTA

protein sequence of jgi.p|Nanoce1779_2|228685

>mRNA_37-protein ID=mRNA_37-protein|Name=jgi.p|Nanoce1779_2|228685|organism=Nannochloropsis oceanica|type=polypeptide|length=540bp
MEDTGRTYHVKVSAVVSKVSVCVCDIHCTQTRGRELTKQSRWRVTDIDKT
STTRAWTPPIPPASLGCPLLCGSSRPPSFLFVIMQSPTYWLAPRRFSTLQ
PPTKSQDGLRFDTSNQRRILLPGCRSCCRLPLPWAPLKSRMGTPTTPSTP
QRNGERLETRPLDTSSDKVNGGAGGSKTREVSASISADLLGYFLAVLILL
NFWSAAFLELVMYVVFAPMYPPIWHATRILGVRFGWLPPMIFLKWANIRL
RVTGHAAAASGLGTMPSSSSSSWSSSWQRYIDLFTPGKLPRALIMINHLS
WADSFVLSPWLHAHNSVNGDTCWPMWRGFINMPLGWIAYMSECPVLGYGK
EMDLETIRKSVSRFFQRRMTKFFLFPEGAVFRECMLQKSHEYAQANNLPL
LDHCLLPKHGAFLEAGQALHRQGMETLVDITIAYPPTSSLYNAPFNVIDL
VKYHPTPLYVHLNVRTFDMREIPWEEEDKVRQWLTRRFEEKDRFLDDYYK
GKGGVMVEGGKEEGPRWRDLALDVLLWMGVQVVMYTVNV*

mRNA from alignment at scaffold_3:108013..110320+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_37 ID=mRNA_37|Name=jgi.p|Nanoce1779_2|228685|organism=Nannochloropsis oceanica|type=mRNA|length=2308bp|location=Sequence derived from alignment at scaffold_3:108013..110320+ (Nannochloropsis oceanica)
CCGGCGGGGGGTGATCTAATCTCATGATGATGGTAGTGCTGACCAGGCAT
TGAAAAAAGAGGATAAAGGGGTCGTGTAGGTGTCACGGCTTGACAAGGCG
AGAAGAAGCAGGGGTGGCGAGTGGGGAGGCTGACGCTCCGCCGCCTGTTG
TAGGAGGGTAACAGGCAGGGGGGAATGGAAGACACAGGTAGAACATATCA
CGTTAAAGTGTCCGCCGTCGTCTCAAAAGTATCTGTGTGTGTGTGTGACA
TTCACTGCACCCAAACCAGAGGACGCGAGCTCACAAAGCAATCGCGGTGG
CGAGTGACAGACATCGACAAAACCTCGACAACGCGGGCTTGGACTCCTCC
AATACCACCGGCGAGTCTAGGCTGCCCCTTGCTGTGTGGTTCTTCACGTC
CTCCGTCCTTTCTCTTTGTAATCATGCAGTCGCCCACTTACTGGCTCGCC
CCCCGTCGCTTTTCCACGCTACAGCCACCCACCAAATCACAGGACGGGCT
TCGATTCGACACATCGAATCAAAGGAGGATACTTCTCCCAGGCTGTCGCT
CTTGCTGTAGGTTGCCGTTGCCGTGGGCCCCCCTTAAAAGCCGCATGGGG
ACGCCAACAACGCCGTCCACGCCCCAACGAAATGGTGAGCGGCTCGAGAC
CCGACCCTTGGACACGTCGAGCGACAAAGTAAATGGTGGCGCCGGCGGCA
GCAAAACCCGTGAGGTCTCGGCATCCATCTCGGCCGATTTATTAGGCTAC
TTCCTCGCGGTACTCATTCTCCTAAACTTCTGGTCGGCCGCATTTTTGGA
ACTAGTCATGTACGTGGTGTTTGCGCCGATGTATCCACCAATATGGCACG
CAACCCGCATCCTTGGCGTTCGCTTCGGCTGGCTCCCCCCTATGATCTTC
CTCAAGTGGGCCAACATTCGACTGCGGGTCACAGGGCACGCTGCAGCAGC
TTCTGGCCTGGGGACCATGCCTTCTTCTTCCTCCTCCTCCTGGTCCTCGT
CATGGCAACGGTACATCGACCTTTTCACCCCCGGCAAGCTTCCCCGTGCC
TTGATCATGATCAACCACCTCTCGTGGGCAGATTCCTTCGTCCTCTCCCC
TTGGCTGCATGCCCACAACAGCGTCAACGGCGATACCTGTTGGCCAATGT
GGCGGGGGTTCATCAACATGCCCTTGGGATGGATTGCCTACATGTCAGAA
TGCCCTGTTTTAGGGTACGGGAAAGAGATGGACCTCGAGACAATCCGCAA
GAGCGTTTCGCGTTTTTTTCAACGGAGGATGACGAAGTTTTTCCTCTTCC
CCGAGGGCGCCGTTTTTCGGGAATGTATGCTTCAGAAATCCCACGAATAC
GCCCAAGCTAACAACCTTCCCCTGCTCGATCACTGCCTGCTGCCAAAGCA
CGGTGCCTTCCTCGAGGCTGGCCAAGCGCTGCATCGGCAGGGAATGGAGA
CACTAGTGGACATAACCATTGCCTACCCCCCAACTTCCTCCCTGTACAAT
GCACCTTTCAATGTCATAGACTTGGTCAAATATCATCCAACGCCACTGTA
TGTGCATTTGAATGTGCGGACGTTCGATATGCGGGAGATCCCCTGGGAGG
AGGAGGATAAGGTGCGGCAGTGGCTTACGCGTCGGTTTGAAGAGAAGGAT
CGTTTCTTGGACGATTACTACAAGGGAAAGGGAGGGGTAATGGTGGAGGG
GGGGAAGGAGGAAGGGCCCCGATGGAGAGATTTGGCATTGGATGTACTGC
TGTGGATGGGGGTACAAGTGGTCATGTATACAGTGTTGTACGCGCTGGGG
GCGAGGGTGCTGGGGAGGATGACGGTGAGGTGAGAAGGAGTGAGGGAGGG
GGGGAGGGGGGGAGGGGGGGAGGAAAGGAAATGCAATTAATTTTGAAAAA
AGATGGGTGTATGGATTAAGGGACTTCGGGAGGAGAAAGAGAAGGTGAGT
TATTGGGAGAGAGAGAGGGACGGGGGAAGAGATGAAGGGCGTGCAGTAAT
GTGTGAGCGCAGCCTTGTGCCTACGTGGGGCCTGATGACATGACGATAAG
AGTAAAGAAGAGTATGAGAAGATGCGACAAGATTCATGGCCTGTCGTTGT
CAGGAGGCACTGGAAGGGACGGGAAGGGAGAGGGCGGCTTTTGAAAAGAT
GTAGTGTGTGAAATGCGCGAATCGAGTAAGTTAATTTGTAACAACCGTCC
AAGAAAAGAGACGAAGAGAGGTGCCGTTTGGAAAGAAGCCTGATACAAGC
GAAAGGAAGGAAAGATTAGAACGAAAAGAAGAAGACGTGATGGTACCTAC
GACTCCTA

Coding sequence (CDS) from alignment at scaffold_3:108013..110320+

>mRNA_37 ID=mRNA_37|Name=jgi.p|Nanoce1779_2|228685|organism=Nannochloropsis oceanica|type=CDS|length=3240bp|location=Sequence derived from alignment at scaffold_3:108013..110320+ (Nannochloropsis oceanica)
ATGGAAGACACAGGTAGAACATATCACGTTAAAGTGTCCGCCGTCGTCTC
AAAAGTATCTGTGTGTGTGTGTGACATTCACTGCACCCAAACCAGAGGAC
GCGAGCTCACAAAGCAATCGCGGTGGCGAGTGACAGACATCGACAAAACC
TCGACAACGCGGGCTTGGACTCCTCCAATACCACCGGCGAGTCTAGGCTG
CCCCTTGCTGTGTGGTTCTTCACGTCCTCCGTCCTTTCTCTTTGTAATCA
TGCAGTCGCCCACTTACTGGCTCGCCCCCCGTCGCTTTTCCACGCTACAG
CCACCCACCAAATCACAGGACGGGCTTCGATTCGACACATCGAATCAAAG
GAGGATACTTCTCCCAGGCTGTCGCTCTTGCTGTAGGTTGCCGTTGCCGT
GGGCCCCCCTTAAAAGCCGCATGGGGACGCCAACAACGCCGTCCACGCCC
CAACGAAATGGTGAGCGGCTCGAGACCCGACCCTTGGACACGTCGAGCGA
CAAAGTAAATGGTGGCGCCGGCGGCAGCAAAACCCGTGAGGTCTCGGCAT
CCATCTCGGCCGATTTATTAGGCTACTTCCTCGCGGTACTCATTCTCCTA
AACTTCTGGTCGGCCGCATTTTTGGAACTAGTCATGTACGTGGTGTTTGC
GCCGATGTATCCACCAATATGGCACGCAACCCGCATCCTTGGCGTTCGCT
TCGGCTGGCTCCCCCCTATGATCTTCCTCAAGTGGGCCAACATTCGACTG
CGGGTCACAGGGCACGCTGCAGCAGCTTCTGGCCTGGGGACCATGCCTTC
TTCTTCCTCCTCCTCCTGGTCCTCGTCATGGCAACGGTACATCGACCTTT
TCACCCCCGGCAAGCTTCCCCGTGCCTTGATCATGATCAACCACCTCTCG
TGGGCAGATTCCTTCGTCCTCTCCCCTTGGCTGCATGCCCACAACAGCGT
CAACGGCGATACCTGTTGGCCAATGTGGCGGGGGTTCATCAACATGCCCT
TGGGATGGATTGCCTACATGTCAGAATGCCCTGTTTTAGGGTACGGGAAA
GAGATGGACCTCGAGACAATCCGCAAGAGCGTTTCGCGTTTTTTTCAACG
GAGGATGACGAAGTTTTTCCTCTTCCCCGAGGGCGCCGTTTTTCGGGAAT
GTATGCTTCAGAAATCCCACGAATACGCCCAAGCTAACAACCTTCCCCTG
CTCGATCACTGCCTGCTGCCAAAGCACGGTGCCTTCCTCGAGGCTGGCCA
AGCGCTGCATCGGCAGGGAATGGAGACACTAGTGGACATAACCATTGCCT
ACCCCCCAACTTCCTCCCTGTACAATGCACCTTTCAATGTCATAGACTTG
GTCAAATATCATCCAACGCCACTGTATGTGCATTTGAATGTGCGGACGTT
CGATATGCGGGAGATCCCCTGGGAGGAGGAGGATAAGGTGCGGCAGTGGC
TTACGCGTCGGTTTGAAGAGAAGGATCGTTTCTTGGACGATTACTACAAG
GGAAAGGGAGGGGTAATGGTGGAGGGGGGGAAGGAGGAAGGGCCCCGATG
GAGAGATTTGGCATTGGATGTACTGCTGTGGATGGGGGTACAAGTGGTCA
TGTATACAGTTAATGTGTGAATGGAAGACACAGGTAGAACATATCACGTT
AAAGTGTCCGCCGTCGTCTCAAAAGTATCTGTGTGTGTGTGTGACATTCA
CTGCACCCAAACCAGAGGACGCGAGCTCACAAAGCAATCGCGGTGGCGAG
TGACAGACATCGACAAAACCTCGACAACGCGGGCTTGGACTCCTCCAATA
CCACCGGCGAGTCTAGGCTGCCCCTTGCTGTGTGGTTCTTCACGTCCTCC
GTCCTTTCTCTTTGTAATCATGCAGTCGCCCACTTACTGGCTCGCCCCCC
GTCGCTTTTCCACGCTACAGCCACCCACCAAATCACAGGACGGGCTTCGA
TTCGACACATCGAATCAAAGGAGGATACTTCTCCCAGGCTGTCGCTCTTG
CTGTAGGTTGCCGTTGCCGTGGGCCCCCCTTAAAAGCCGCATGGGGACGC
CAACAACGCCGTCCACGCCCCAACGAAATGGTGAGCGGCTCGAGACCCGA
CCCTTGGACACGTCGAGCGACAAAGTAAATGGTGGCGCCGGCGGCAGCAA
AACCCGTGAGGTCTCGGCATCCATCTCGGCCGATTTATTAGGCTACTTCC
TCGCGGTACTCATTCTCCTAAACTTCTGGTCGGCCGCATTTTTGGAACTA
GTCATGTACGTGGTGTTTGCGCCGATGTATCCACCAATATGGCACGCAAC
CCGCATCCTTGGCGTTCGCTTCGGCTGGCTCCCCCCTATGATCTTCCTCA
AGTGGGCCAACATTCGACTGCGGGTCACAGGGCACGCTGCAGCAGCTTCT
GGCCTGGGGACCATGCCTTCTTCTTCCTCCTCCTCCTGGTCCTCGTCATG
GCAACGGTACATCGACCTTTTCACCCCCGGCAAGCTTCCCCGTGCCTTGA
TCATGATCAACCACCTCTCGTGGGCAGATTCCTTCGTCCTCTCCCCTTGG
CTGCATGCCCACAACAGCGTCAACGGCGATACCTGTTGGCCAATGTGGCG
GGGGTTCATCAACATGCCCTTGGGATGGATTGCCTACATGTCAGAATGCC
CTGTTTTAGGGTACGGGAAAGAGATGGACCTCGAGACAATCCGCAAGAGC
GTTTCGCGTTTTTTTCAACGGAGGATGACGAAGTTTTTCCTCTTCCCCGA
GGGCGCCGTTTTTCGGGAATGTATGCTTCAGAAATCCCACGAATACGCCC
AAGCTAACAACCTTCCCCTGCTCGATCACTGCCTGCTGCCAAAGCACGGT
GCCTTCCTCGAGGCTGGCCAAGCGCTGCATCGGCAGGGAATGGAGACACT
AGTGGACATAACCATTGCCTACCCCCCAACTTCCTCCCTGTACAATGCAC
CTTTCAATGTCATAGACTTGGTCAAATATCATCCAACGCCACTGTATGTG
CATTTGAATGTGCGGACGTTCGATATGCGGGAGATCCCCTGGGAGGAGGA
GGATAAGGTGCGGCAGTGGCTTACGCGTCGGTTTGAAGAGAAGGATCGTT
TCTTGGACGATTACTACAAGGGAAAGGGAGGGGTAATGGTGGAGGGGGGG
AAGGAGGAAGGGCCCCGATGGAGAGATTTGGCATTGGATGTACTGCTGTG
GATGGGGGTACAAGTGGTCATGTATACAGTTAATGTGTGA

Synonyms

Publications