jgi.p|Nanoce1779_2|610444, mRNA_10215 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|610444
Unique NamemRNA_10215
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length596
Alignment locationscaffold_50:33635..34738 +

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Properties
Property NameValue
TranscriptId610530
TrackFilteredModels2
ProteinId610444
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_50supercontigscaffold_50:33635..34738 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610444gene_10215Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610444mRNA_10215-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10215CDS_10215Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10215 ID=mRNA_10215|Name=jgi.p|Nanoce1779_2|610444|organism=Nannochloropsis oceanica|type=mRNA|length=596bp
AGAGGTGAACTTTGACAGCTCTAGGAGTAATCTGTCAGAGCCTCCACAGG
GGGCCCTCGCCTCCATGACGCCCTCTACACAGTCCTCCACCACCGCCCAT
GACAGCAAGAGGTTCAAGGTCCTTTCCGGCCTTCTCGTCCTGGGCTTGAT
CGTTGCTTTAACAGTCGCCTTTGCTGGCCAGCAGCGTCATGCTAAGGAGA
GCAAAGTCACAGGGGCAGACGACACTGCGGATACTTTCTCTCCTAGCGAA
GCTCTCTCTATCCTCCTCGCTGGCGACAAGCAAAAGCCTCCTTCGGCCCC
TCCTCCACCTCTGCCGCCTGTTCCTTCCCCCCCTCCTCTGCTGGCTTCCG
CTCCCCCAGCTCAGCGAGAGCCAGACGCTAAGAATATCATCACTCCCGGC
AGTGCCGTAGTGGGGCAATGGACCGACACCCGGATGGGTGGCCTCGTGGA
GGGCTGTACCCCGAAAACAGGCGAAGAGCTGGCCTTTCTTGTGGAAAACA
CGACTTGTCCGGTGATTACCCTTCTTCCAGGCGCCACCTATATCTTGAAA
CAATTTATCCGGGTTATGCCGGGTCGTCGTGTCTCGGTCGTTGGCC
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protein sequence of jgi.p|Nanoce1779_2|610444

>mRNA_10215-protein ID=mRNA_10215-protein|Name=jgi.p|Nanoce1779_2|610444|organism=Nannochloropsis oceanica|type=polypeptide|length=74bp
MLRRAKSQGQTTLRILSLLAKLSLSSSLATSKSLLRPLLHLCRLFLPPLL
CWLPLPQLSESQTLRISSLPAVP*
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mRNA from alignment at scaffold_50:33635..34738+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10215 ID=mRNA_10215|Name=jgi.p|Nanoce1779_2|610444|organism=Nannochloropsis oceanica|type=mRNA|length=1104bp|location=Sequence derived from alignment at scaffold_50:33635..34738+ (Nannochloropsis oceanica)
AGAGGTGAACTTTGACAGCTCTAGGAGTAATCTGTCAGAGCCTCCACAGG
GGGCCCTCGCCTCCATGACGCCCTCTACACAGTCCTCCACCACCGCCCAT
GACAGCAAGAGGTTCAAGGTCCTTTCCGGCCTTCTCGTCCTGGGCTTGAT
CGTTGCTTTAACAGTCGCCTTTGCTGGCCAGCAGCGTCATGCTAAGGAGA
GCAAAGTCACAGGGGCAGACGACACTGCGGTACGTTCGCTTCCCTTTCTT
CCTCCCTCATATTTGTAATTGCTTTGGCGGCCCACCATCTATCAGTATCG
AAGAGGACTTATAAAAGTGATCACTCTAATCCCTCTTTCGAATTATTCCC
GGCCGTCGGTACCAGCCGTAGTAGGTGCGACATCATCTTCCTCTGTCGCA
TCCCTCCCTCTCTCTTTTGCCTCCTTTCGAAAATAAGTAGCATTGTCACC
GATGACTTCCTTTGCTGTCCCATCCTTTTCCCTAGGATACTTTCTCTCCT
AGCGAAGCTCTCTCTATCCTCCTCGCTGGCGACAAGCAAAAGCCTCCTTC
GGCCCCTCCTCCACCTCTGCCGCCTGTTCCTTCCCCCCCTCCTCTGCTGG
CTTCCGCTCCCCCAGCTCAGCGAGAGCCAGACGCTAAGAATATCATCACT
CCCGGCAGTGCCGTAGTGGGGCAATGGACCGACACCCGGATGGGTGGCCT
CGTGGAGGGCTGTACCCCGAAAACAGGCGAAGAGCTGGCCTTTCTTGTGG
AAAGTAAGTCTGTTTCCCCTCCCTCCCTCCCTTCCTCCCTCTTTTTCGCT
CAGCTGGCAACAGCCGCCCCCCAAAATAGAATTTGGCCGCGAGTAGTGTG
AGCATATATAGAGAGTTTTGTTTGAATTCCATAAATGTTTCATGTATTTC
AATGAATTTCAAAAAAATATTCACATTTAAATATTCGATTGTATGTATTT
TTGTGTATAATCTCATCTCCCCTCCTTTCCTCTTTCACTCCTTCTCTCCC
TTTAGACACGACTTGTCCGGTGATTACCCTTCTTCCAGGCGCCACCTATA
TCTTGAAACAATTTATCCGGGTTATGCCGGGTCGTCGTGTCTCGGTCGTT
GGCC
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Coding sequence (CDS) from alignment at scaffold_50:33635..34738+

>mRNA_10215 ID=mRNA_10215|Name=jgi.p|Nanoce1779_2|610444|organism=Nannochloropsis oceanica|type=CDS|length=444bp|location=Sequence derived from alignment at scaffold_50:33635..34738+ (Nannochloropsis oceanica)
ATGCTAAGGAGAGCAAAGTCACAGGGGCAGACGACACTGCGGATACTTTC
TCTCCTAGCGAAGCTCTCTCTATCCTCCTCGCTGGCGACAAGCAAAAGCC
TCCTTCGGCCCCTCCTCCACCTCTGCCGCCTGTTCCTTCCCCCCCTCCTC
TGCTGGCTTCCGCTCCCCCAGCTCAGCGAGAGCCAGACGCTAAGAATATC
ATCACTCCCGGCAGTGCCGTAGATGCTAAGGAGAGCAAAGTCACAGGGGC
AGACGACACTGCGGATACTTTCTCTCCTAGCGAAGCTCTCTCTATCCTCC
TCGCTGGCGACAAGCAAAAGCCTCCTTCGGCCCCTCCTCCACCTCTGCCG
CCTGTTCCTTCCCCCCCTCCTCTGCTGGCTTCCGCTCCCCCAGCTCAGCG
AGAGCCAGACGCTAAGAATATCATCACTCCCGGCAGTGCCGTAG
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Synonyms
Publications