jgi.p|Nanoce1779_2|614760, mRNA_11642 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|614760
Unique NamemRNA_11642
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1124
Alignment locationscaffold_91:24011..25134 +

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Properties
Property NameValue
TranscriptId614846
TrackFilteredModels2
ProteinId614760
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_91supercontigscaffold_91:24011..25134 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|614760gene_11642Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|614760mRNA_11642-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_11642CDS_11642Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_11642 ID=mRNA_11642|Name=jgi.p|Nanoce1779_2|614760|organism=Nannochloropsis oceanica|type=mRNA|length=1124bp
AGAAGAAGTAGTAGGAGTAGGAGTAGGAGTAGGAGTAGGAGTAGGAGTAG
GAGTAGGAGTAGGAGTAGGAGTAGGAAATACAAATGCTTTAGGTAATATG
CCTGCGATTTGGCGGCTCCTTGATCATGTATATGTGCTGGTGGCGCGTTC
AGTCTGCCATTTTTTGCCACCCTCTCTCTATTTTCCTCGGAGTGTGTCGC
TCCGCCATTCGCTTGTGTGTCTTGGTCTTCTGAAGTCGACATGTTTTAAG
TGCGCAATAGATCGTTGGGTTATTTCCCTTTCTCTTCCTATACACATCTC
CGTCTACCTTCTTTATCTCTCCTCTAGTCTTGAATTAGAGTCTTATGCCG
TCCTTCTCTCAGATTCGCCCCGCTTGTCCGCAGACATCTGTCTCTGTCTC
TCTGTCTGTCCTCAATCTCACTCTCTCCATGTGTTTCAGTCTCTCGCAAG
CGACAAGGCGGGGCGTCGTGTCTGTCATTGAAGGAGTGCTTTTAATAACG
TATTTAATAATCACCAAACAAATACGCTTCCGATCATTGTTCTCTTCTCT
GTTCTCCTCTCGGTCTCCCTCCCTCGTCTCTTCCCTTCCACCTCTTCTCT
ATCTCCTTCTCACTCTCACTTATGGCAGTCATTGTCTGTGTACAAAAAAT
AACAATGTCAAAATCAAAAGTAATACTATCATTAAAAGTCACCTACCCGT
CTTCTCTTCCCCCTCCCTCTCCTTCCCTAAATACTTCTCAATCCAGCTGC
TTTTCCCCCTTCCTCCCTCCCCTCACAAGATAGCCGCCACGGGTACCACG
GGTTGTGAGTCCTCTTCCTCCTCCCTCCTCTCCCTCTTTCTTTCCCTCTC
CTTCGCCAGCACCGGACTGTGGGTGCGCTCCCGCAGAAACTTAAGCATCA
ACAACCCCTCCGCTCCCTCATCCTCCTTATCCATCTCCCTCGTTCCCCCC
TCCCCCTCCTCCTCATCTTCCGCCTCACCAGCCACAACAGTGGCCGTGGA
GGAGGACGAGGACGAGGACGAGGGAAGAAATGTCTGGAGTATCGTCGGCT
TCCCCTCTTCCTCGTCCCCTTCCTTCTTCTCCTCACTCCTTCTTTGCACC
GAGTGAGACGAGACGGGCTGCTGC
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protein sequence of jgi.p|Nanoce1779_2|614760

>mRNA_11642-protein ID=mRNA_11642-protein|Name=jgi.p|Nanoce1779_2|614760|organism=Nannochloropsis oceanica|type=polypeptide|length=254bp
MPSFSQIRPACPQTSVSVSLSVLNLTLSMCFSLSQATRRGVVSVIEGVLL
ITYLIITKQIRFRSLFSSLFSSRSPSLVSSLPPLLYLLLTLTYGSHCLCT
KNNNVKIKSNTIIKSHLPVFSSPSLSFPKYFSIQLLFPLPPSPHKIAATG
TTGCESSSSSLLSLFLSLSFASTGLWVRSRRNLSINNPSAPSSSLSISLV
PPSPSSSSSASPATTVAVEEDEDEDEGRNVWSIVGFPSSSSPSFFSSLLL
CTE*
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mRNA from alignment at scaffold_91:24011..25134+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11642 ID=mRNA_11642|Name=jgi.p|Nanoce1779_2|614760|organism=Nannochloropsis oceanica|type=mRNA|length=1124bp|location=Sequence derived from alignment at scaffold_91:24011..25134+ (Nannochloropsis oceanica)
AGAAGAAGTAGTAGGAGTAGGAGTAGGAGTAGGAGTAGGAGTAGGAGTAG
GAGTAGGAGTAGGAGTAGGAGTAGGAAATACAAATGCTTTAGGTAATATG
CCTGCGATTTGGCGGCTCCTTGATCATGTATATGTGCTGGTGGCGCGTTC
AGTCTGCCATTTTTTGCCACCCTCTCTCTATTTTCCTCGGAGTGTGTCGC
TCCGCCATTCGCTTGTGTGTCTTGGTCTTCTGAAGTCGACATGTTTTAAG
TGCGCAATAGATCGTTGGGTTATTTCCCTTTCTCTTCCTATACACATCTC
CGTCTACCTTCTTTATCTCTCCTCTAGTCTTGAATTAGAGTCTTATGCCG
TCCTTCTCTCAGATTCGCCCCGCTTGTCCGCAGACATCTGTCTCTGTCTC
TCTGTCTGTCCTCAATCTCACTCTCTCCATGTGTTTCAGTCTCTCGCAAG
CGACAAGGCGGGGCGTCGTGTCTGTCATTGAAGGAGTGCTTTTAATAACG
TATTTAATAATCACCAAACAAATACGCTTCCGATCATTGTTCTCTTCTCT
GTTCTCCTCTCGGTCTCCCTCCCTCGTCTCTTCCCTTCCACCTCTTCTCT
ATCTCCTTCTCACTCTCACTTATGGCAGTCATTGTCTGTGTACAAAAAAT
AACAATGTCAAAATCAAAAGTAATACTATCATTAAAAGTCACCTACCCGT
CTTCTCTTCCCCCTCCCTCTCCTTCCCTAAATACTTCTCAATCCAGCTGC
TTTTCCCCCTTCCTCCCTCCCCTCACAAGATAGCCGCCACGGGTACCACG
GGTTGTGAGTCCTCTTCCTCCTCCCTCCTCTCCCTCTTTCTTTCCCTCTC
CTTCGCCAGCACCGGACTGTGGGTGCGCTCCCGCAGAAACTTAAGCATCA
ACAACCCCTCCGCTCCCTCATCCTCCTTATCCATCTCCCTCGTTCCCCCC
TCCCCCTCCTCCTCATCTTCCGCCTCACCAGCCACAACAGTGGCCGTGGA
GGAGGACGAGGACGAGGACGAGGGAAGAAATGTCTGGAGTATCGTCGGCT
TCCCCTCTTCCTCGTCCCCTTCCTTCTTCTCCTCACTCCTTCTTTGCACC
GAGTGAGACGAGACGGGCTGCTGC
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Coding sequence (CDS) from alignment at scaffold_91:24011..25134+

>mRNA_11642 ID=mRNA_11642|Name=jgi.p|Nanoce1779_2|614760|organism=Nannochloropsis oceanica|type=CDS|length=762bp|location=Sequence derived from alignment at scaffold_91:24011..25134+ (Nannochloropsis oceanica)
ATGCCGTCCTTCTCTCAGATTCGCCCCGCTTGTCCGCAGACATCTGTCTC
TGTCTCTCTGTCTGTCCTCAATCTCACTCTCTCCATGTGTTTCAGTCTCT
CGCAAGCGACAAGGCGGGGCGTCGTGTCTGTCATTGAAGGAGTGCTTTTA
ATAACGTATTTAATAATCACCAAACAAATACGCTTCCGATCATTGTTCTC
TTCTCTGTTCTCCTCTCGGTCTCCCTCCCTCGTCTCTTCCCTTCCACCTC
TTCTCTATCTCCTTCTCACTCTCACTTATGGCAGTCATTGTCTGTGTACA
AAAAATAACAATGTCAAAATCAAAAGTAATACTATCATTAAAAGTCACCT
ACCCGTCTTCTCTTCCCCCTCCCTCTCCTTCCCTAAATACTTCTCAATCC
AGCTGCTTTTCCCCCTTCCTCCCTCCCCTCACAAGATAGCCGCCACGGGT
ACCACGGGTTGTGAGTCCTCTTCCTCCTCCCTCCTCTCCCTCTTTCTTTC
CCTCTCCTTCGCCAGCACCGGACTGTGGGTGCGCTCCCGCAGAAACTTAA
GCATCAACAACCCCTCCGCTCCCTCATCCTCCTTATCCATCTCCCTCGTT
CCCCCCTCCCCCTCCTCCTCATCTTCCGCCTCACCAGCCACAACAGTGGC
CGTGGAGGAGGACGAGGACGAGGACGAGGGAAGAAATGTCTGGAGTATCG
TCGGCTTCCCCTCTTCCTCGTCCCCTTCCTTCTTCTCCTCACTCCTTCTT
TGCACCGAGTGA
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Synonyms
Publications