jgi.p|Nanoce1779_2|592651, mRNA_5478 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|592651
Unique Name	mRNA_5478
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2825
Alignment location	scaffold_13:508265..511254 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	592737
Track	FilteredModels2
ProteinId	592651

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_13	supercontig	scaffold_13:508265..511254 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592651	gene_5478	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|592651	mRNA_5478-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5478	CDS_5478	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_13:508265..511254+
coding sequence from alignment at scaffold_13:508265..511254+

mRNA sequence

>mRNA_5478 ID=mRNA_5478|Name=jgi.p|Nanoce1779_2|592651|organism=Nannochloropsis oceanica|type=mRNA|length=2825bp
AGGCTCCCCCTAAGTGGTCAAGCCATGCGTGGGCAACAACTTTTGCTCCT
CCGCCGGGCAAGTTTTCGAACATCAACATCAACCGGCCAGCCCCTCTTTC
GTGGTCGTCACCCTTTTTCGACTACCCCGCCGTCCACCATCCCTAGCAAT
CCCACCCACCCTCCTCCCACTGCAGAGGTCTCTCCCCTTCCTCCACCCCT
GCCTGACGTCCCTGTCGTGGCGCCTGGGCCGGGTTCTGCCAATTTGTACA
AGGCTGCGGCAGTAGTTTTAGGTATCGGGACTGGATACGCAATTGCCAAT
GTGACGGATGAAAGCCTGGGCTTCTTTTGGCCTAACCCAAAGAGGGACGC
AACAGCCCGCGGGTTTTCGACGGAGGCCAGCGTGACCAACTGGTCGGCAA
CACATGCGGTGGACCCGAAGAAATATTACGAGCCGCATAACATGGAGGAG
CTTGAGTTGCTCGTGCGAGATGCTCACGCCAAGGGCCAACGGATTCGGCC
TGTCGGAACAGCACTCTCGCCCAACGGCCTGGGAATGGATAAGGATGGGA
TGGTGTGCCTCAGTCATTTGGATAAGGTGCTGGATATTGACACAAAGACA
CAGACCGTCACAGTACAGGCAGGGGCGAGGGTGAGTCAGGTGTTGGAAGC
CTTGGGGAGACACGGGTTGACCTTGCAGAACTTCTCTTCCATTCAGGAGC
AGCAACTAGGGGGTTGGACTCAGGTCGCTGCCCATGGAACAGGCGCGTCT
TTGCCAACGGTGGAGGAGCAGATTGTGCGGATGAAGCTGGTGACGCCTGC
GAGTGGAGTAATTGAATTGAGCGAGACCCAGGACCCCGAGCTGTTCGGGT
TGGCCAAAGTGGGTTTGGGAGCCTTGGGGATTGTGTCGGAATTGACTCTC
AAATGCATCCCTCAGCATGAATTGCTCGAGAGGACTTACGTGGTGAATAG
CTTCAAGGAGCTGAAAAGAGATCATCACCGGCTACTGAGGGAGTACAGGC
ACGTCAGATATATGTGGCTCCCACATACCGATAGCATCGTTGTCGTCATC
TCCAACCCGTATGAAGAAGGCGTGACCCCCCTTCCTCCCTCTTTTCAGAC
TCCCTCCATTCCCGAATCCGTCAAACTGACCGCTGTTCGTTCCCTCCTCC
TGTCACATCCTGCCTGTCGTCTCTCCCCTACGGATGCTGCTGCTCTCGGG
TTCACCGAGCTGCGTGACGCGCTTCTGGACCTTGCGCCTTTAGACCCCAG
CTGGGTCGGGCGTGTGAACGCCGCCGAGGCTAATTATTGGAAGGCGAGTG
AAGGCTATCGCAAGGGAGGTTCGACTGAAATTTTGGGGTTTGACTGCGGG
GGGCAACAATGGGTGTTGGAGGTGGCCTTCCCCATTGGCAGGCTTCCTAA
GGAGGGGGAAAAGGAGGGAGGGAGGAAAGGTTTAAATTGGTGGGGTGGAG
GGAAAGGGGAGACTGAGACAAAGGATTTGGAATTTGTGAATCGCTTGAGG
ACGATGATTCGGGAGAAGAATTTGCCTGCGCCTTGTCCGATCGAGCAGAG
GTGGACGGCGAGTAGTACCGCGGGGATGAGTCCCGCGAGTAGCAGAGATA
GGGAAGAGGTCTTTAGCTGGGTAGGCGTGATAATGTACTTGCCGCCAGGG
CAGGACGAGGACGGGAGGGAGGAGATTGGGAAGACGTTCAGGAGGTACGT
GGCAGAGATGGAGCCGTTGTGTGAGGAGTTTGGGGCTTTGCCGCATTGGG
CCAAGATCGAGGTGCCGAAGGAGGAAGGCGCGAGGGAGCGATTGAAGGCA
CGGTTGGCGGGCAGGTACCCGGTGGCGGCGTTTAATATTGTGAGGAAGGG
CTTTGATCCCAAAGGGGTGTTGGGGAATGAGATGGTGGAGAAGTTGTTTG
CGGAGGGGGGGAAGGAGAGATGAGGGACGAAGGGAGGAGGGAGGGTACAG
GAGAAGAGATGATTTCCACCATAACCATGCAAAAGTAGGTGAGTCTCCTT
CCCATATTTTTCCTGTAGAAATCCGCAAGTACCGTTCTGGTGTTGTTGTA
GTTCCTCTTCTTTCTACTCTTCTTCCTTTTCGCTCTCTTCTCTGACGCCT
GCTGACCCATCTACACTTATAGCACATCTAAACACCTCGATGTAAATTTA
TTTAAAGTACAATTTGTGATTCCCTTCCTGCCCCTTCCTTTCGTGTCGGT
CTTGTCTAATTTCTATATCTCTCCAAGTCGCCGAGGAGGGGTAAGTCGAA
TATAAATACGCGTGAAAACACCAGTCTCTCCTGCTGAGGGTACTACGGCA
TGTCAACTTGTCATGGTTCATTTCATCTCTTGAGCCGCAAACAATGTGTA
GGCCTCGTTCACGCTGGTGAACACCTTCTCCGCCACAAACCGCTGCTCCG
CCGAGCCGTTCACGTTCTTGTCCGGGTGCACCACTAACATGGCCTTCCGG
TAATGAAACTTGACACGATCGGGCGCCATCAGATCTCCCAAAAAGACAGG
CTTCCAACTCACACACCCCGGCCACAAGACCGTGTGCATGGTCGAGAGCA
AGGTGCGAACATTCCGTAATTTACCACCTGCTTGGGGGGGATCTCGTGCC
CAAGCATCCAGGCGAGGGAGCAACTTGTGACGGAGCGCCTCTTGCTCTTG
CTCTTCCTTGGCGGCTTCGGCCTGCTTGACGCTTGTGGGCTGCATGAAAA
ACAGCTCTTCGGGCGTGGCATTTGCCGTGGGATTGGGAGGGATGGGAGTG
GTGCTCCTGCTGCCATTTTTGTTGTTGCCACTGCTGCCGTCGCTGGTTTT
GGTGGTGGTGGAGAAGGGGTAAGGG

protein sequence of jgi.p|Nanoce1779_2|592651

>mRNA_5478-protein ID=mRNA_5478-protein|Name=jgi.p|Nanoce1779_2|592651|organism=Nannochloropsis oceanica|type=polypeptide|length=633bp
MRGQQLLLLRRASFRTSTSTGQPLFRGRHPFSTTPPSTIPSNPTHPPPTA
EVSPLPPPLPDVPVVAPGPGSANLYKAAAVVLGIGTGYAIANVTDESLGF
FWPNPKRDATARGFSTEASVTNWSATHAVDPKKYYEPHNMEELELLVRDA
HAKGQRIRPVGTALSPNGLGMDKDGMVCLSHLDKVLDIDTKTQTVTVQAG
ARVSQVLEALGRHGLTLQNFSSIQEQQLGGWTQVAAHGTGASLPTVEEQI
VRMKLVTPASGVIELSETQDPELFGLAKVGLGALGIVSELTLKCIPQHEL
LERTYVVNSFKELKRDHHRLLREYRHVRYMWLPHTDSIVVVISNPYEEGV
TPLPPSFQTPSIPESVKLTAVRSLLLSHPACRLSPTDAAALGFTELRDAL
LDLAPLDPSWVGRVNAAEANYWKASEGYRKGGSTEILGFDCGGQQWVLEV
AFPIGRLPKEGEKEGGRKGLNWWGGGKGETETKDLEFVNRLRTMIREKNL
PAPCPIEQRWTASSTAGMSPASSRDREEVFSWVGVIMYLPPGQDEDGREE
IGKTFRRYVAEMEPLCEEFGALPHWAKIEVPKEEGARERLKARLAGRYPV
AAFNIVRKGFDPKGVLGNEMVEKLFAEGGKER*

mRNA from alignment at scaffold_13:508265..511254+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5478 ID=mRNA_5478|Name=jgi.p|Nanoce1779_2|592651|organism=Nannochloropsis oceanica|type=mRNA|length=2990bp|location=Sequence derived from alignment at scaffold_13:508265..511254+ (Nannochloropsis oceanica)
AGGCTCCCCCTAAGTGGTCAAGCCATGCGTGGGCAACAACTTTTGCTCCT
CCGCCGGGCAAGTTTTCGAACATCAACATCAACCGGCCAGCCCCTCTTTC
GTGGTCGTCACCCTTTTTCGACTACCCCGCCGTCCACCATCCCTAGCAAT
CCCACCCACCCTCCTCCCACTGCAGAGGTCTCTCCCCTTCCTCCACCCCT
GCCTGACGTCCCTGTCGTGGCGCCTGGGCCGGGTTCTGCCAATTTGTACA
AGGCTGCGGCAGTAGTTTTAGGTATCGGGACTGGATACGCAATTGCCAAT
GTGACGGATGAAAGCCTGGGCTTCTTTTGGCCTAACCCAAAGAGGGACGC
AACAGCCCGCGGGTTTTCGACGGAGGCCAGCGTGACCAACTGGTCGGCAA
CACATGCGGTGGACCCGAAGAAATATTACGAGCCGCATAACATGGAGGAG
CTTGAGTTGCTCGTGCGAGATGCTCACGCCAAGGGCCAACGGATTCGGCC
TGTCGGAACAGCACTCTCGCCCAACGGCCTGGGAATGGATAAGGATGGGA
TGGTGTGCCTCAGTCATTTGGATAAGGTGCTGGATATTGACACAAAGACA
CAGACCGTCACAGTACAGGCAGGGGCGAGGGTGAGTCAGGTGTTGGAAGC
CTTGGGGAGACACGGGTTGACCTTGCAGAACTTCTCTTCCATTCAGGAGC
AGCAACTAGGGGGTTGGACTCAGGTCGCTGCCCATGGAACAGGCGCGTCT
TTGCCAACGGTGGAGGAGCAGATTGTGCGGATGAAGCTGGTGACGCCTGC
GAGTGGAGTAATTGAATTGAGCGAGACCCAGGACCCCGAGCTGTTCGGGT
TGGCCAAAGTGGGTTTGGGAGCCTTGGGGATTGTGTCGGAATTGACTCTC
AAATGCATCCCTCAGCATGAATTGCTCGAGAGGACTTACGTGGTGAATAG
CTTCAAGGAGCTGAAAAGAGATCATCACCGGCTACTGAGGGAGTACAGGC
ACGTCAGATATATGTGGCTCCCACATACCGATAGCATCGTTGTCGTCATC
TCCAACCCGTATGAAGAAGGCGTGACCCCCCTTCCTCCCTCTTTTCAGAC
TCCCTCCATTCCCGAATCCGTCAAACTGACCGCTGTTCGTTCCCTCCTCC
TGTCACATCCTGCCTGTCGTCTCTCCCCTACGGATGCTGCTGCTCTCGGG
TTCACCGAGCTGCGTGACGCGCTTCTGGACCTTGCGCCTTTAGACCCCAG
CTGGGTCGGGCGTGTGAACGCCGCCGAGGCTAATTATTGGAAGGCGAGTG
AAGGCTATCGCAAGGGAGGTTCGACTGAAATTTTGGGGTTTGACTGCGGG
GGGCAACAATGGGTGTTGGAGGTGGCCTTCCCCATTGGCAGGCTTCCTAA
GGAGGGGGAAAAGGAGGGAGGGAGGAAAGGTTTAAATTGGTGGGGTGGAG
GGAAAGGGGAGACTGAGACAAAGGATTTGGAATTTGTGAATCGCTTGAGG
ACGATGATTCGGGAGAAGAATTTGCCTGCGCCTTGTCCGATCGAGCAGAG
GTGGACGGCGAGTAGTACCGCGGGGATGAGTCCCGCGAGTAGCAGAGATA
GGGAAGAGGTCTTTAGCTGGGTAGGCGTGATAATGTACTTGCCGCCAGGG
CAGGACGAGGACGGGAGGGAGGAGATTGGGAAGACGTTCAGGAGGTACGT
GGCAGAGATGGAGCCGTTGTGTGAGGAGTTTGGGGCTTTGCCGCATTGGG
CCAAGATCGAGGTGCCGAAGGAGGAAGGCGCGAGGGAGCGATTGAAGGCA
CGGTTGGCGGGCAGGTACCCGGTGGCGGCGTTTAATATTGTGAGGAAGGG
CTTTGATCCCAAAGGGGTGTTGGGGAATGAGATGGTGGAGAAGTTGTTTG
CGGAGGGGGGGAAGGAGAGATGAGGGACGAAGGGAGGAGGGAGGGTACAG
GAGAAGAGATGATTTCCACCATAACCATGCAAAAGTAGGTGAGTCTCCTT
CCCATATTTTTCCTGTAGAAATCCGCAAGTACCGTTCTGGTGTTGTTGTA
GTTCCTCTTCTTTCTACTCTTCTTCCTTTTCGCTCTCTTCTCTGACGCCT
GCTGACCCATCTACACTTATAGCACATCTAAACACCTCGATGTAAATTTA
TTTAAAGTACAATTTGTGATTCCCTTCCTGCCCCTTCCTTTCGTGTCGGT
CTTGTCTAATTTCTATATCTCTCCAAGTCGCCGAGGAGGGGTAAGTCGAA
TATAAATACGCGTGAAAACACCAGTCTCTCCTGCTGAGGGTACTACGGCA
TGTCAACTTGTCATGGTTCATTTCATCTCTTGAGCCGCAAACAATGTGTA
GGCCTCGTTCACGCTGGTGAACACCTGTGAGCGTGAAAGAGATGTGGAAA
GGGGGGAGGGAGGGAGGGAGGAGTGAGTATGAGTCCGTGCCTGTGCAACA
TGCTTAAACGACCTTCTCCGAGCACACCCCACCATCCTGCCTCCCTGCCT
TCCCCCCTTCCTCCCTCCCTCCTTCCCTCCCTCCCGTACCTTCTCCGCCA
CAAACCGCTGCTCCGCCGAGCCGTTCACGTTCTTGTCCGGGTGCACCACT
AACATGGCCTTCCGGTAATGAAACTTGACACGATCGGGCGCCATCAGATC
TCCCAAAAAGACAGGCTTCCAACTCACACACCCCGGCCACAAGACCGTGT
GCATGGTCGAGAGCAAGGTGCGAACATTCCGTAATTTACCACCTGCTTGG
GGGGGATCTCGTGCCCAAGCATCCAGGCGAGGGAGCAACTTGTGACGGAG
CGCCTCTTGCTCTTGCTCTTCCTTGGCGGCTTCGGCCTGCTTGACGCTTG
TGGGCTGCATGAAAAACAGCTCTTCGGGCGTGGCATTTGCCGTGGGATTG
GGAGGGATGGGAGTGGTGCTCCTGCTGCCATTTTTGTTGTTGCCACTGCT
GCCGTCGCTGGTTTTGGTGGTGGTGGAGAAGGGGTAAGGG

Coding sequence (CDS) from alignment at scaffold_13:508265..511254+

>mRNA_5478 ID=mRNA_5478|Name=jgi.p|Nanoce1779_2|592651|organism=Nannochloropsis oceanica|type=CDS|length=1899bp|location=Sequence derived from alignment at scaffold_13:508265..511254+ (Nannochloropsis oceanica)
ATGCGTGGGCAACAACTTTTGCTCCTCCGCCGGGCAAGTTTTCGAACATC
AACATCAACCGGCCAGCCCCTCTTTCGTGGTCGTCACCCTTTTTCGACTA
CCCCGCCGTCCACCATCCCTAGCAATCCCACCCACCCTCCTCCCACTGCA
GAGGTCTCTCCCCTTCCTCCACCCCTGCCTGACGTCCCTGTCGTGGCGCC
TGGGCCGGGTTCTGCCAATTTGTACAAGGCTGCGGCAGTAGTTTTAGGTA
TCGGGACTGGATACGCAATTGCCAATGTGACGGATGAAAGCCTGGGCTTC
TTTTGGCCTAACCCAAAGAGGGACGCAACAGCCCGCGGGTTTTCGACGGA
GGCCAGCGTGACCAACTGGTCGGCAACACATGCGGTGGACCCGAAGAAAT
ATTACGAGCCGCATAACATGGAGGAGCTTGAGTTGCTCGTGCGAGATGCT
CACGCCAAGGGCCAACGGATTCGGCCTGTCGGAACAGCACTCTCGCCCAA
CGGCCTGGGAATGGATAAGGATGGGATGGTGTGCCTCAGTCATTTGGATA
AGGTGCTGGATATTGACACAAAGACACAGACCGTCACAGTACAGGCAGGG
GCGAGGGTGAGTCAGGTGTTGGAAGCCTTGGGGAGACACGGGTTGACCTT
GCAGAACTTCTCTTCCATTCAGGAGCAGCAACTAGGGGGTTGGACTCAGG
TCGCTGCCCATGGAACAGGCGCGTCTTTGCCAACGGTGGAGGAGCAGATT
GTGCGGATGAAGCTGGTGACGCCTGCGAGTGGAGTAATTGAATTGAGCGA
GACCCAGGACCCCGAGCTGTTCGGGTTGGCCAAAGTGGGTTTGGGAGCCT
TGGGGATTGTGTCGGAATTGACTCTCAAATGCATCCCTCAGCATGAATTG
CTCGAGAGGACTTACGTGGTGAATAGCTTCAAGGAGCTGAAAAGAGATCA
TCACCGGCTACTGAGGGAGTACAGGCACGTCAGATATATGTGGCTCCCAC
ATACCGATAGCATCGTTGTCGTCATCTCCAACCCGTATGAAGAAGGCGTG
ACCCCCCTTCCTCCCTCTTTTCAGACTCCCTCCATTCCCGAATCCGTCAA
ACTGACCGCTGTTCGTTCCCTCCTCCTGTCACATCCTGCCTGTCGTCTCT
CCCCTACGGATGCTGCTGCTCTCGGGTTCACCGAGCTGCGTGACGCGCTT
CTGGACCTTGCGCCTTTAGACCCCAGCTGGGTCGGGCGTGTGAACGCCGC
CGAGGCTAATTATTGGAAGGCGAGTGAAGGCTATCGCAAGGGAGGTTCGA
CTGAAATTTTGGGGTTTGACTGCGGGGGGCAACAATGGGTGTTGGAGGTG
GCCTTCCCCATTGGCAGGCTTCCTAAGGAGGGGGAAAAGGAGGGAGGGAG
GAAAGGTTTAAATTGGTGGGGTGGAGGGAAAGGGGAGACTGAGACAAAGG
ATTTGGAATTTGTGAATCGCTTGAGGACGATGATTCGGGAGAAGAATTTG
CCTGCGCCTTGTCCGATCGAGCAGAGGTGGACGGCGAGTAGTACCGCGGG
GATGAGTCCCGCGAGTAGCAGAGATAGGGAAGAGGTCTTTAGCTGGGTAG
GCGTGATAATGTACTTGCCGCCAGGGCAGGACGAGGACGGGAGGGAGGAG
ATTGGGAAGACGTTCAGGAGGTACGTGGCAGAGATGGAGCCGTTGTGTGA
GGAGTTTGGGGCTTTGCCGCATTGGGCCAAGATCGAGGTGCCGAAGGAGG
AAGGCGCGAGGGAGCGATTGAAGGCACGGTTGGCGGGCAGGTACCCGGTG
GCGGCGTTTAATATTGTGAGGAAGGGCTTTGATCCCAAAGGGGTGTTGGG
GAATGAGATGGTGGAGAAGTTGTTTGCGGAGGGGGGGAAGGAGAGATGA

Synonyms

Publications