jgi.p|Nanoce1779_2|592651, gene_5478 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592651
Unique Namegene_5478
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_13:508265..511254 +

Link to JBrowse

Properties
Property NameValue
TranscriptId592737
ProteinId592651
Product nameL-Galactono-1,4-lactone dehydrogenase
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:508265..511254 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016633galactonolactone dehydrogenase activity
GO:0003824catalytic activity
GO:0003885D-arabinono-1,4-lactone oxidase activity
GO:0016491oxidoreductase activity
GO:0050660flavin adenine dinucleotide binding
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL015ncniL015Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region
ncniL014ncniL014Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G03040NO12G03040Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592651mRNA_5478-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592651mRNA_5478Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|592651

>mRNA_5478-protein ID=mRNA_5478-protein|Name=jgi.p|Nanoce1779_2|592651|organism=Nannochloropsis oceanica|type=polypeptide|length=633bp
MRGQQLLLLRRASFRTSTSTGQPLFRGRHPFSTTPPSTIPSNPTHPPPTA
EVSPLPPPLPDVPVVAPGPGSANLYKAAAVVLGIGTGYAIANVTDESLGF
FWPNPKRDATARGFSTEASVTNWSATHAVDPKKYYEPHNMEELELLVRDA
HAKGQRIRPVGTALSPNGLGMDKDGMVCLSHLDKVLDIDTKTQTVTVQAG
ARVSQVLEALGRHGLTLQNFSSIQEQQLGGWTQVAAHGTGASLPTVEEQI
VRMKLVTPASGVIELSETQDPELFGLAKVGLGALGIVSELTLKCIPQHEL
LERTYVVNSFKELKRDHHRLLREYRHVRYMWLPHTDSIVVVISNPYEEGV
TPLPPSFQTPSIPESVKLTAVRSLLLSHPACRLSPTDAAALGFTELRDAL
LDLAPLDPSWVGRVNAAEANYWKASEGYRKGGSTEILGFDCGGQQWVLEV
AFPIGRLPKEGEKEGGRKGLNWWGGGKGETETKDLEFVNRLRTMIREKNL
PAPCPIEQRWTASSTAGMSPASSRDREEVFSWVGVIMYLPPGQDEDGREE
IGKTFRRYVAEMEPLCEEFGALPHWAKIEVPKEEGARERLKARLAGRYPV
AAFNIVRKGFDPKGVLGNEMVEKLFAEGGKER*
back to top
Synonyms
Publications