jgi.p|Nanoce1779_2|596314, mRNA_6787 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596314
Unique NamemRNA_6787
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1508
Alignment locationscaffold_17:96729..98236 +

Link to JBrowse

Properties
Property NameValue
TranscriptId596400
TrackFilteredModels2
ProteinId596314
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:96729..98236 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596314gene_6787Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596314mRNA_6787-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6787CDS_6787Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6787 ID=mRNA_6787|Name=jgi.p|Nanoce1779_2|596314|organism=Nannochloropsis oceanica|type=mRNA|length=1508bp
CCCATGTCTGTGCCATCAACACCCAGGACAGGTTGGAGAAGCAGGAGATT
GTGCGCGAGCCTCCTGGGTCTCTCTGGCTCATGCAATACGCCGCCCATCC
CCTCTTTGATCACCGCAACCATCTCCCGCGCCTCCGCATGACGACTACTA
CGATCATGCCAGCAGCCGTAGCTGCTACACCAGCCAGAAAGCGAAGGAAA
CTACATCAGAACCCACTCGCAGCCTTGTCATCCCTCCATGCCCTCCTCTT
GCTTGGTCTCGCGTGGCTTGAGTGCCGAGCCTTCGTTATCCCTCGACCCA
CGTCCTCGCCTTCGCTCGTCTTAAGCTTGACCCTACCACGGCAGCACCGG
CCACGACAGCTTCGGATGATTATGGACGAACCAAAAGTTGGTGAAGAGCC
CTCGGTCATGTCACAAGCTTTGAGCAAGCAAAAGACCTTGTCGCGCTACG
TGGAAGTCGAGACGTGGAAGCACCGGGAGCTAACAGACCTGCAACCCGTC
ATGCGCGGCATTGAGTCCGCCTGTCGGGGCATCGCCACCTTAGTCCGCCG
CGCGCAATGTGACGAAATTGCGGGTCTACATGGTAATGACGGAGATATGA
ATGTACAGGGGGAGGTGCAAAAAGTTATGGATGTCCTCGCGAACAATATC
CTGGCCGCTTCAATGTGTGCCCCCGGTAAAATGGACTACGTCGCCTCAGA
GGAAGAAGAAGAGCCCACTTACTGCTCTGCGGTCCTGCAAAATGCTGCAT
TCCAAGGGGAGTATGCCGGGGTTTTTGATCCATTAGATGGTAGCTCTAAC
ATTGAGGCAGGTCTGCCCGTGGGTACCATCTTTGGAATCTACCGACGCCC
CCAACTCAACCTCTCTCCGGAACGAGAACGAGATCCTCTCGAGGCCATCA
TGCAACCAGGCAGCAAATTATTAGCCTCAGGATACTGCCTGTATGGAGGA
CAGACCATTCTCGTCCTCACCCTCGGGCAGGGTGTGCACGGCTTCACGTT
GAACAAGCCCGGTGGGGACTTTATTTTAACCCAGCCCAACATGCGCATTC
CAGCCCGAGGACAGCTTTATGCCATCAATGAGGGATCCTCCCACCTCTGG
GAACCGAAGGTGACCGAGTACGTACGTCGACTGAAATTAGGCGAGGGGGA
GGGGAATGTGCCCCACAGAACGGCATACGTGGGAGCGATGGTCGCAGACG
TGCATAGGGTGCTGGTAGAGGGAGGGGTGTACGCTTACCCTGGTACGGTG
GATGCGCCGAATGGAAAAATTCGGTTGTTGTACGAGGCAAATCCCATGAG
CATGTTGGTGGAGCAGGCGGGCGGATTGAGCACCACGGGTAGGCAAAGGA
TCTTGGACTTGAAGCCGACGGGGATTCACCAGCGGGTGCCGATATTCATT
GGTAGCAAGGAGGATATCAAGGACCTGCAGGCATTGTTGAAGGATTGAGG
AAGTGGGGGAGGGAGAAAGCTGGATGGAGGGAAGGAGGGAGACAGGGGTA
TAAGGAGG
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protein sequence of jgi.p|Nanoce1779_2|596314

>mRNA_6787-protein ID=mRNA_6787-protein|Name=jgi.p|Nanoce1779_2|596314|organism=Nannochloropsis oceanica|type=polypeptide|length=456bp
MQYAAHPLFDHRNHLPRLRMTTTTIMPAAVAATPARKRRKLHQNPLAALS
SLHALLLLGLAWLECRAFVIPRPTSSPSLVLSLTLPRQHRPRQLRMIMDE
PKVGEEPSVMSQALSKQKTLSRYVEVETWKHRELTDLQPVMRGIESACRG
IATLVRRAQCDEIAGLHGNDGDMNVQGEVQKVMDVLANNILAASMCAPGK
MDYVASEEEEEPTYCSAVLQNAAFQGEYAGVFDPLDGSSNIEAGLPVGTI
FGIYRRPQLNLSPERERDPLEAIMQPGSKLLASGYCLYGGQTILVLTLGQ
GVHGFTLNKPGGDFILTQPNMRIPARGQLYAINEGSSHLWEPKVTEYVRR
LKLGEGEGNVPHRTAYVGAMVADVHRVLVEGGVYAYPGTVDAPNGKIRLL
YEANPMSMLVEQAGGLSTTGRQRILDLKPTGIHQRVPIFIGSKEDIKDLQ
ALLKD*
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mRNA from alignment at scaffold_17:96729..98236+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6787 ID=mRNA_6787|Name=jgi.p|Nanoce1779_2|596314|organism=Nannochloropsis oceanica|type=mRNA|length=1508bp|location=Sequence derived from alignment at scaffold_17:96729..98236+ (Nannochloropsis oceanica)
CCCATGTCTGTGCCATCAACACCCAGGACAGGTTGGAGAAGCAGGAGATT
GTGCGCGAGCCTCCTGGGTCTCTCTGGCTCATGCAATACGCCGCCCATCC
CCTCTTTGATCACCGCAACCATCTCCCGCGCCTCCGCATGACGACTACTA
CGATCATGCCAGCAGCCGTAGCTGCTACACCAGCCAGAAAGCGAAGGAAA
CTACATCAGAACCCACTCGCAGCCTTGTCATCCCTCCATGCCCTCCTCTT
GCTTGGTCTCGCGTGGCTTGAGTGCCGAGCCTTCGTTATCCCTCGACCCA
CGTCCTCGCCTTCGCTCGTCTTAAGCTTGACCCTACCACGGCAGCACCGG
CCACGACAGCTTCGGATGATTATGGACGAACCAAAAGTTGGTGAAGAGCC
CTCGGTCATGTCACAAGCTTTGAGCAAGCAAAAGACCTTGTCGCGCTACG
TGGAAGTCGAGACGTGGAAGCACCGGGAGCTAACAGACCTGCAACCCGTC
ATGCGCGGCATTGAGTCCGCCTGTCGGGGCATCGCCACCTTAGTCCGCCG
CGCGCAATGTGACGAAATTGCGGGTCTACATGGTAATGACGGAGATATGA
ATGTACAGGGGGAGGTGCAAAAAGTTATGGATGTCCTCGCGAACAATATC
CTGGCCGCTTCAATGTGTGCCCCCGGTAAAATGGACTACGTCGCCTCAGA
GGAAGAAGAAGAGCCCACTTACTGCTCTGCGGTCCTGCAAAATGCTGCAT
TCCAAGGGGAGTATGCCGGGGTTTTTGATCCATTAGATGGTAGCTCTAAC
ATTGAGGCAGGTCTGCCCGTGGGTACCATCTTTGGAATCTACCGACGCCC
CCAACTCAACCTCTCTCCGGAACGAGAACGAGATCCTCTCGAGGCCATCA
TGCAACCAGGCAGCAAATTATTAGCCTCAGGATACTGCCTGTATGGAGGA
CAGACCATTCTCGTCCTCACCCTCGGGCAGGGTGTGCACGGCTTCACGTT
GAACAAGCCCGGTGGGGACTTTATTTTAACCCAGCCCAACATGCGCATTC
CAGCCCGAGGACAGCTTTATGCCATCAATGAGGGATCCTCCCACCTCTGG
GAACCGAAGGTGACCGAGTACGTACGTCGACTGAAATTAGGCGAGGGGGA
GGGGAATGTGCCCCACAGAACGGCATACGTGGGAGCGATGGTCGCAGACG
TGCATAGGGTGCTGGTAGAGGGAGGGGTGTACGCTTACCCTGGTACGGTG
GATGCGCCGAATGGAAAAATTCGGTTGTTGTACGAGGCAAATCCCATGAG
CATGTTGGTGGAGCAGGCGGGCGGATTGAGCACCACGGGTAGGCAAAGGA
TCTTGGACTTGAAGCCGACGGGGATTCACCAGCGGGTGCCGATATTCATT
GGTAGCAAGGAGGATATCAAGGACCTGCAGGCATTGTTGAAGGATTGAGG
AAGTGGGGGAGGGAGAAAGCTGGATGGAGGGAAGGAGGGAGACAGGGGTA
TAAGGAGG
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Coding sequence (CDS) from alignment at scaffold_17:96729..98236+

>mRNA_6787 ID=mRNA_6787|Name=jgi.p|Nanoce1779_2|596314|organism=Nannochloropsis oceanica|type=CDS|length=1368bp|location=Sequence derived from alignment at scaffold_17:96729..98236+ (Nannochloropsis oceanica)
ATGCAATACGCCGCCCATCCCCTCTTTGATCACCGCAACCATCTCCCGCG
CCTCCGCATGACGACTACTACGATCATGCCAGCAGCCGTAGCTGCTACAC
CAGCCAGAAAGCGAAGGAAACTACATCAGAACCCACTCGCAGCCTTGTCA
TCCCTCCATGCCCTCCTCTTGCTTGGTCTCGCGTGGCTTGAGTGCCGAGC
CTTCGTTATCCCTCGACCCACGTCCTCGCCTTCGCTCGTCTTAAGCTTGA
CCCTACCACGGCAGCACCGGCCACGACAGCTTCGGATGATTATGGACGAA
CCAAAAGTTGGTGAAGAGCCCTCGGTCATGTCACAAGCTTTGAGCAAGCA
AAAGACCTTGTCGCGCTACGTGGAAGTCGAGACGTGGAAGCACCGGGAGC
TAACAGACCTGCAACCCGTCATGCGCGGCATTGAGTCCGCCTGTCGGGGC
ATCGCCACCTTAGTCCGCCGCGCGCAATGTGACGAAATTGCGGGTCTACA
TGGTAATGACGGAGATATGAATGTACAGGGGGAGGTGCAAAAAGTTATGG
ATGTCCTCGCGAACAATATCCTGGCCGCTTCAATGTGTGCCCCCGGTAAA
ATGGACTACGTCGCCTCAGAGGAAGAAGAAGAGCCCACTTACTGCTCTGC
GGTCCTGCAAAATGCTGCATTCCAAGGGGAGTATGCCGGGGTTTTTGATC
CATTAGATGGTAGCTCTAACATTGAGGCAGGTCTGCCCGTGGGTACCATC
TTTGGAATCTACCGACGCCCCCAACTCAACCTCTCTCCGGAACGAGAACG
AGATCCTCTCGAGGCCATCATGCAACCAGGCAGCAAATTATTAGCCTCAG
GATACTGCCTGTATGGAGGACAGACCATTCTCGTCCTCACCCTCGGGCAG
GGTGTGCACGGCTTCACGTTGAACAAGCCCGGTGGGGACTTTATTTTAAC
CCAGCCCAACATGCGCATTCCAGCCCGAGGACAGCTTTATGCCATCAATG
AGGGATCCTCCCACCTCTGGGAACCGAAGGTGACCGAGTACGTACGTCGA
CTGAAATTAGGCGAGGGGGAGGGGAATGTGCCCCACAGAACGGCATACGT
GGGAGCGATGGTCGCAGACGTGCATAGGGTGCTGGTAGAGGGAGGGGTGT
ACGCTTACCCTGGTACGGTGGATGCGCCGAATGGAAAAATTCGGTTGTTG
TACGAGGCAAATCCCATGAGCATGTTGGTGGAGCAGGCGGGCGGATTGAG
CACCACGGGTAGGCAAAGGATCTTGGACTTGAAGCCGACGGGGATTCACC
AGCGGGTGCCGATATTCATTGGTAGCAAGGAGGATATCAAGGACCTGCAG
GCATTGTTGAAGGATTGA
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Synonyms
Publications