jgi.p|Nanoce1779_2|635100, mRNA_11939 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|635100
Unique Name	mRNA_11939
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2925
Alignment location	scaffold_171:10083..13007 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	635186
Track	FilteredModels2
ProteinId	635100

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_171	supercontig	scaffold_171:10083..13007 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|635100	gene_11939	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|635100	mRNA_11939-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_11939	CDS_11939	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_171:10083..13007+
coding sequence from alignment at scaffold_171:10083..13007+

mRNA sequence

>mRNA_11939 ID=mRNA_11939|Name=jgi.p|Nanoce1779_2|635100|organism=Nannochloropsis oceanica|type=mRNA|length=2925bp
AACAGCCATGGCCGATAGCAGCGACGACAGCAACAACATAGTCGACCCGC
GGGGCCACCAGTCACCGGACGTCAAGTCGTTTCAAAGCTTGGTTGGTGCC
TTGGTTCCTGCCCTCATCATTGGCACCATTTACCTATTGATATGGTGCTT
GGTCACTCGGCATCGCTTCCGTGACGTATATGACTGCAAGCGTCGTCGCC
TCGACATCTTGCATGAGGAAAGTCACCGCAGTTCTACCGGCCGCCAGCCT
TCCACGCGAGCCGAGGTAGGCAAGACTGCTGCGGACGAAAAGTCATACAT
GTCAAGCAGGCTCAATAACATCACCACCACTGACGCTACCAGTGCGAGCC
CATCCATTGCCTCGACCACAGCACCTGTGTCGCTGCTTCCGCCACAAGTC
TTTCCCCCAAATTTGCCCATGTACCACAATCCCGTGCGGTGGCTCTCCAT
GTTCTGGCACATTTCGGAGCACACTCTGATTGGAAGCATAGGGGCTGATG
CCTTCTTGTTCTTGCGCTTCCTCCGCCTTGGGTACTGGGTCAGCCTAGCG
GCATCGATTCTGGGGCTCTTGATCTTATTGCCTGTCAATACGGTGGGCGG
CAACCACCTGGGCCAGCTCGAGCGCTTGTCCTTGTCCAACGTTGCGGATG
GTTCGAGTTTATTGTGGATCCCCTTTGTGATGACATATTTTCTTGTTGCA
TTTGTATTATATTTGCTCCACATCGAGTATACTATGTACGTCGAATTGCG
ACAACGCTACTTGCGCTGTTCTACGGCCCAAAACTACTCTATCCTCCTGC
GAGACATCCCGAAGGCAACGAGCAGTCACATGCTTAAAACGTATCTCACC
AACCTGCTGGGCGATGATGTGGCCGCCATCCATTGCCTCAATCACCACAG
GCGCATTCGCCACGAAAGGTTGGTAAAGCGGAAGGACGAGGCCGTAGTGC
GATTGGTCCGGGCCAAGCGCGAGCTGGAAAGCAGTGGTACTCAAAAGCGT
CCCACCCATCGAGACAACTGTCGTCTCTTGGGAGCACCTCTTCGATGGCT
GCCTGCTTGGGGCCCCAAGATAGATACGATCGACGCCCTGAAGAATGAGA
TTGGACAATGCAACCGCTTGCTAATCTTGATCCGGGACGAAGACGAGATT
CCGACTAGTGTCGAAAGCCCTGTTCACGCATGCATCGTGACAGTTGAGCT
CGTGCGTGTGGCCACAGCCTTTAAGACTATCCCTTTCCAGCCTCACATCG
AGTACTTTACCGTAAAGGAGGCGCCTGCGCCCGAGCAAGTGCTGTGGCGG
CATTTGGCCTCGCCCCGATGGGCTCGTTCCCTCCGTAGCATACTTGTCTG
GATAGTGATTGGCGTGGCGATCCTGAGTTACACTATACCTGTGGCCTTTG
CCTCTACTCTGAGCAATCTGACGGCTCTTTCAAGCATGTCGGCCTTTCAC
TGGTTACGACCTCTCGTGAACGCAAGTCCGGCACTTACAGCCCTCATCCA
AGGCTTTTTGCCTCCGCTGTTGGTGGCCTTTTTACTAAGTTTGGTGCCAG
CATGTATGAAGTCCTTGACCAGAATGCAACACTTGCCCTCCGACGTAGAG
TGCGAGAACTCTGCAATTCACAAGATTTTTTTGTTTGGCCTTCTCGACAT
CTTTTTAGCCTACACCATTGCGGGCTCCATCTTGGGCAAGATTCAACAAT
TCTTGGACCTCGCGGACCATCCCTCGGAAATCTTGAGTCTATTTGCCACC
ACACTCCCCGCGCAATCCACCTTTTTCATGACATATATCGCCTTCGGAGC
GCTGAATGTGCTCCCTGCAGAGTTGCTGCGATTGGGCTCGCTGGTGGTGA
CTACTATCAAGAGGAAGTGGCTGCAGACGAGCCGCGGTTTATGGGACGAG
CTGGAGCATCTTACCTATCCCGTGGGTTTGCACGAGCTTTACAACTTTCC
AATGATTATTTTTTTGGCCTTGGTCACGTATTCCGTGGTAGCACCGCTCG
TATCCCTTTTCGCCCTTGTATACTTTGCGCTTGCTTATCCGGTCTACCTG
CACCAAATCGTGTACGTCTATCAGCCCACGGCTCACACGGGCGGGACGCA
ATGGCCTGTCGTCTGCGACTGCTGTATCGCGGCTTTGGTTGTGCAGACAT
TGCTCCTGATGGGTATTTTCGCCATGAAGAAAGCCGTCCTGCCTGCCGCC
TTTCTGTTGCCCTTACTTGTCGCTATTATCACAGTAGGCCTCCGCTTCCG
AAAAGAGTACACAAAGGTGACAACCGTTGCAACGCTGGAGAGCTTAATGC
ACACGGATTTGGCGGAGTATGGACCCACTACCTGGAACAATCTTAAAGAC
TCCTACGATCCTTACCCTGATAGCGGACGAACCATGGAACTATCCAAGGG
TAAGATGACCTTTTTGACTGAGCCATATGGTGTGGTGACCCAGGGTGTGT
TCAGCGAAGGGCAGCGAGGCACGGTATGCCTGATGAATGCATCGTCATTG
GATGAGTTTAGGGAAGCAATGAGGGGTATCAGGGGCACTGGGCCGCAGTC
TGCGTGCCCATCGGCAACAGACTATGGGAGCTTGGCAGTGGGGCAAGAGT
CTGGCGGCGGTCCAGGGAGCGATGTCCGCCAAGAGGCGTATTACCAAGGC
CAAGTCAACGAGCCTACGCGGGAAATCCAGATACAAGTGGGGCAAACGGA
CGGGACGATTAGAGATCAAAATTGTGAGCGGGTTGACGTGTAGGAAACAC
GGTGTGTATCAAAGGTCCTTGAGACATTGAATACAAACAGATTCCAAAAT
AAGACAATCAAGAAAAATAGAAAGAGGGGAACAGTTCATGAGAAAGATCG
CAGGCATCGACATAAACGCTGCCAAAAAATAACCCTAACTCTAACCCTGA
CCCAGAAATATCTTAGCAAAGGGAA

protein sequence of jgi.p|Nanoce1779_2|635100

>mRNA_11939-protein ID=mRNA_11939-protein|Name=jgi.p|Nanoce1779_2|635100|organism=Nannochloropsis oceanica|type=polypeptide|length=912bp
MADSSDDSNNIVDPRGHQSPDVKSFQSLVGALVPALIIGTIYLLIWCLVT
RHRFRDVYDCKRRRLDILHEESHRSSTGRQPSTRAEVGKTAADEKSYMSS
RLNNITTTDATSASPSIASTTAPVSLLPPQVFPPNLPMYHNPVRWLSMFW
HISEHTLIGSIGADAFLFLRFLRLGYWVSLAASILGLLILLPVNTVGGNH
LGQLERLSLSNVADGSSLLWIPFVMTYFLVAFVLYLLHIEYTMYVELRQR
YLRCSTAQNYSILLRDIPKATSSHMLKTYLTNLLGDDVAAIHCLNHHRRI
RHERLVKRKDEAVVRLVRAKRELESSGTQKRPTHRDNCRLLGAPLRWLPA
WGPKIDTIDALKNEIGQCNRLLILIRDEDEIPTSVESPVHACIVTVELVR
VATAFKTIPFQPHIEYFTVKEAPAPEQVLWRHLASPRWARSLRSILVWIV
IGVAILSYTIPVAFASTLSNLTALSSMSAFHWLRPLVNASPALTALIQGF
LPPLLVAFLLSLVPACMKSLTRMQHLPSDVECENSAIHKIFLFGLLDIFL
AYTIAGSILGKIQQFLDLADHPSEILSLFATTLPAQSTFFMTYIAFGALN
VLPAELLRLGSLVVTTIKRKWLQTSRGLWDELEHLTYPVGLHELYNFPMI
IFLALVTYSVVAPLVSLFALVYFALAYPVYLHQIVYVYQPTAHTGGTQWP
VVCDCCIAALVVQTLLLMGIFAMKKAVLPAAFLLPLLVAIITVGLRFRKE
YTKVTTVATLESLMHTDLAEYGPTTWNNLKDSYDPYPDSGRTMELSKGKM
TFLTEPYGVVTQGVFSEGQRGTVCLMNASSLDEFREAMRGIRGTGPQSAC
PSATDYGSLAVGQESGGGPGSDVRQEAYYQGQVNEPTREIQIQVGQTDGT
IRDQNCERVDV*

mRNA from alignment at scaffold_171:10083..13007+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_11939 ID=mRNA_11939|Name=jgi.p|Nanoce1779_2|635100|organism=Nannochloropsis oceanica|type=mRNA|length=2925bp|location=Sequence derived from alignment at scaffold_171:10083..13007+ (Nannochloropsis oceanica)
AACAGCCATGGCCGATAGCAGCGACGACAGCAACAACATAGTCGACCCGC
GGGGCCACCAGTCACCGGACGTCAAGTCGTTTCAAAGCTTGGTTGGTGCC
TTGGTTCCTGCCCTCATCATTGGCACCATTTACCTATTGATATGGTGCTT
GGTCACTCGGCATCGCTTCCGTGACGTATATGACTGCAAGCGTCGTCGCC
TCGACATCTTGCATGAGGAAAGTCACCGCAGTTCTACCGGCCGCCAGCCT
TCCACGCGAGCCGAGGTAGGCAAGACTGCTGCGGACGAAAAGTCATACAT
GTCAAGCAGGCTCAATAACATCACCACCACTGACGCTACCAGTGCGAGCC
CATCCATTGCCTCGACCACAGCACCTGTGTCGCTGCTTCCGCCACAAGTC
TTTCCCCCAAATTTGCCCATGTACCACAATCCCGTGCGGTGGCTCTCCAT
GTTCTGGCACATTTCGGAGCACACTCTGATTGGAAGCATAGGGGCTGATG
CCTTCTTGTTCTTGCGCTTCCTCCGCCTTGGGTACTGGGTCAGCCTAGCG
GCATCGATTCTGGGGCTCTTGATCTTATTGCCTGTCAATACGGTGGGCGG
CAACCACCTGGGCCAGCTCGAGCGCTTGTCCTTGTCCAACGTTGCGGATG
GTTCGAGTTTATTGTGGATCCCCTTTGTGATGACATATTTTCTTGTTGCA
TTTGTATTATATTTGCTCCACATCGAGTATACTATGTACGTCGAATTGCG
ACAACGCTACTTGCGCTGTTCTACGGCCCAAAACTACTCTATCCTCCTGC
GAGACATCCCGAAGGCAACGAGCAGTCACATGCTTAAAACGTATCTCACC
AACCTGCTGGGCGATGATGTGGCCGCCATCCATTGCCTCAATCACCACAG
GCGCATTCGCCACGAAAGGTTGGTAAAGCGGAAGGACGAGGCCGTAGTGC
GATTGGTCCGGGCCAAGCGCGAGCTGGAAAGCAGTGGTACTCAAAAGCGT
CCCACCCATCGAGACAACTGTCGTCTCTTGGGAGCACCTCTTCGATGGCT
GCCTGCTTGGGGCCCCAAGATAGATACGATCGACGCCCTGAAGAATGAGA
TTGGACAATGCAACCGCTTGCTAATCTTGATCCGGGACGAAGACGAGATT
CCGACTAGTGTCGAAAGCCCTGTTCACGCATGCATCGTGACAGTTGAGCT
CGTGCGTGTGGCCACAGCCTTTAAGACTATCCCTTTCCAGCCTCACATCG
AGTACTTTACCGTAAAGGAGGCGCCTGCGCCCGAGCAAGTGCTGTGGCGG
CATTTGGCCTCGCCCCGATGGGCTCGTTCCCTCCGTAGCATACTTGTCTG
GATAGTGATTGGCGTGGCGATCCTGAGTTACACTATACCTGTGGCCTTTG
CCTCTACTCTGAGCAATCTGACGGCTCTTTCAAGCATGTCGGCCTTTCAC
TGGTTACGACCTCTCGTGAACGCAAGTCCGGCACTTACAGCCCTCATCCA
AGGCTTTTTGCCTCCGCTGTTGGTGGCCTTTTTACTAAGTTTGGTGCCAG
CATGTATGAAGTCCTTGACCAGAATGCAACACTTGCCCTCCGACGTAGAG
TGCGAGAACTCTGCAATTCACAAGATTTTTTTGTTTGGCCTTCTCGACAT
CTTTTTAGCCTACACCATTGCGGGCTCCATCTTGGGCAAGATTCAACAAT
TCTTGGACCTCGCGGACCATCCCTCGGAAATCTTGAGTCTATTTGCCACC
ACACTCCCCGCGCAATCCACCTTTTTCATGACATATATCGCCTTCGGAGC
GCTGAATGTGCTCCCTGCAGAGTTGCTGCGATTGGGCTCGCTGGTGGTGA
CTACTATCAAGAGGAAGTGGCTGCAGACGAGCCGCGGTTTATGGGACGAG
CTGGAGCATCTTACCTATCCCGTGGGTTTGCACGAGCTTTACAACTTTCC
AATGATTATTTTTTTGGCCTTGGTCACGTATTCCGTGGTAGCACCGCTCG
TATCCCTTTTCGCCCTTGTATACTTTGCGCTTGCTTATCCGGTCTACCTG
CACCAAATCGTGTACGTCTATCAGCCCACGGCTCACACGGGCGGGACGCA
ATGGCCTGTCGTCTGCGACTGCTGTATCGCGGCTTTGGTTGTGCAGACAT
TGCTCCTGATGGGTATTTTCGCCATGAAGAAAGCCGTCCTGCCTGCCGCC
TTTCTGTTGCCCTTACTTGTCGCTATTATCACAGTAGGCCTCCGCTTCCG
AAAAGAGTACACAAAGGTGACAACCGTTGCAACGCTGGAGAGCTTAATGC
ACACGGATTTGGCGGAGTATGGACCCACTACCTGGAACAATCTTAAAGAC
TCCTACGATCCTTACCCTGATAGCGGACGAACCATGGAACTATCCAAGGG
TAAGATGACCTTTTTGACTGAGCCATATGGTGTGGTGACCCAGGGTGTGT
TCAGCGAAGGGCAGCGAGGCACGGTATGCCTGATGAATGCATCGTCATTG
GATGAGTTTAGGGAAGCAATGAGGGGTATCAGGGGCACTGGGCCGCAGTC
TGCGTGCCCATCGGCAACAGACTATGGGAGCTTGGCAGTGGGGCAAGAGT
CTGGCGGCGGTCCAGGGAGCGATGTCCGCCAAGAGGCGTATTACCAAGGC
CAAGTCAACGAGCCTACGCGGGAAATCCAGATACAAGTGGGGCAAACGGA
CGGGACGATTAGAGATCAAAATTGTGAGCGGGTTGACGTGTAGGAAACAC
GGTGTGTATCAAAGGTCCTTGAGACATTGAATACAAACAGATTCCAAAAT
AAGACAATCAAGAAAAATAGAAAGAGGGGAACAGTTCATGAGAAAGATCG
CAGGCATCGACATAAACGCTGCCAAAAAATAACCCTAACTCTAACCCTGA
CCCAGAAATATCTTAGCAAAGGGAA

Coding sequence (CDS) from alignment at scaffold_171:10083..13007+

>mRNA_11939 ID=mRNA_11939|Name=jgi.p|Nanoce1779_2|635100|organism=Nannochloropsis oceanica|type=CDS|length=2736bp|location=Sequence derived from alignment at scaffold_171:10083..13007+ (Nannochloropsis oceanica)
ATGGCCGATAGCAGCGACGACAGCAACAACATAGTCGACCCGCGGGGCCA
CCAGTCACCGGACGTCAAGTCGTTTCAAAGCTTGGTTGGTGCCTTGGTTC
CTGCCCTCATCATTGGCACCATTTACCTATTGATATGGTGCTTGGTCACT
CGGCATCGCTTCCGTGACGTATATGACTGCAAGCGTCGTCGCCTCGACAT
CTTGCATGAGGAAAGTCACCGCAGTTCTACCGGCCGCCAGCCTTCCACGC
GAGCCGAGGTAGGCAAGACTGCTGCGGACGAAAAGTCATACATGTCAAGC
AGGCTCAATAACATCACCACCACTGACGCTACCAGTGCGAGCCCATCCAT
TGCCTCGACCACAGCACCTGTGTCGCTGCTTCCGCCACAAGTCTTTCCCC
CAAATTTGCCCATGTACCACAATCCCGTGCGGTGGCTCTCCATGTTCTGG
CACATTTCGGAGCACACTCTGATTGGAAGCATAGGGGCTGATGCCTTCTT
GTTCTTGCGCTTCCTCCGCCTTGGGTACTGGGTCAGCCTAGCGGCATCGA
TTCTGGGGCTCTTGATCTTATTGCCTGTCAATACGGTGGGCGGCAACCAC
CTGGGCCAGCTCGAGCGCTTGTCCTTGTCCAACGTTGCGGATGGTTCGAG
TTTATTGTGGATCCCCTTTGTGATGACATATTTTCTTGTTGCATTTGTAT
TATATTTGCTCCACATCGAGTATACTATGTACGTCGAATTGCGACAACGC
TACTTGCGCTGTTCTACGGCCCAAAACTACTCTATCCTCCTGCGAGACAT
CCCGAAGGCAACGAGCAGTCACATGCTTAAAACGTATCTCACCAACCTGC
TGGGCGATGATGTGGCCGCCATCCATTGCCTCAATCACCACAGGCGCATT
CGCCACGAAAGGTTGGTAAAGCGGAAGGACGAGGCCGTAGTGCGATTGGT
CCGGGCCAAGCGCGAGCTGGAAAGCAGTGGTACTCAAAAGCGTCCCACCC
ATCGAGACAACTGTCGTCTCTTGGGAGCACCTCTTCGATGGCTGCCTGCT
TGGGGCCCCAAGATAGATACGATCGACGCCCTGAAGAATGAGATTGGACA
ATGCAACCGCTTGCTAATCTTGATCCGGGACGAAGACGAGATTCCGACTA
GTGTCGAAAGCCCTGTTCACGCATGCATCGTGACAGTTGAGCTCGTGCGT
GTGGCCACAGCCTTTAAGACTATCCCTTTCCAGCCTCACATCGAGTACTT
TACCGTAAAGGAGGCGCCTGCGCCCGAGCAAGTGCTGTGGCGGCATTTGG
CCTCGCCCCGATGGGCTCGTTCCCTCCGTAGCATACTTGTCTGGATAGTG
ATTGGCGTGGCGATCCTGAGTTACACTATACCTGTGGCCTTTGCCTCTAC
TCTGAGCAATCTGACGGCTCTTTCAAGCATGTCGGCCTTTCACTGGTTAC
GACCTCTCGTGAACGCAAGTCCGGCACTTACAGCCCTCATCCAAGGCTTT
TTGCCTCCGCTGTTGGTGGCCTTTTTACTAAGTTTGGTGCCAGCATGTAT
GAAGTCCTTGACCAGAATGCAACACTTGCCCTCCGACGTAGAGTGCGAGA
ACTCTGCAATTCACAAGATTTTTTTGTTTGGCCTTCTCGACATCTTTTTA
GCCTACACCATTGCGGGCTCCATCTTGGGCAAGATTCAACAATTCTTGGA
CCTCGCGGACCATCCCTCGGAAATCTTGAGTCTATTTGCCACCACACTCC
CCGCGCAATCCACCTTTTTCATGACATATATCGCCTTCGGAGCGCTGAAT
GTGCTCCCTGCAGAGTTGCTGCGATTGGGCTCGCTGGTGGTGACTACTAT
CAAGAGGAAGTGGCTGCAGACGAGCCGCGGTTTATGGGACGAGCTGGAGC
ATCTTACCTATCCCGTGGGTTTGCACGAGCTTTACAACTTTCCAATGATT
ATTTTTTTGGCCTTGGTCACGTATTCCGTGGTAGCACCGCTCGTATCCCT
TTTCGCCCTTGTATACTTTGCGCTTGCTTATCCGGTCTACCTGCACCAAA
TCGTGTACGTCTATCAGCCCACGGCTCACACGGGCGGGACGCAATGGCCT
GTCGTCTGCGACTGCTGTATCGCGGCTTTGGTTGTGCAGACATTGCTCCT
GATGGGTATTTTCGCCATGAAGAAAGCCGTCCTGCCTGCCGCCTTTCTGT
TGCCCTTACTTGTCGCTATTATCACAGTAGGCCTCCGCTTCCGAAAAGAG
TACACAAAGGTGACAACCGTTGCAACGCTGGAGAGCTTAATGCACACGGA
TTTGGCGGAGTATGGACCCACTACCTGGAACAATCTTAAAGACTCCTACG
ATCCTTACCCTGATAGCGGACGAACCATGGAACTATCCAAGGGTAAGATG
ACCTTTTTGACTGAGCCATATGGTGTGGTGACCCAGGGTGTGTTCAGCGA
AGGGCAGCGAGGCACGGTATGCCTGATGAATGCATCGTCATTGGATGAGT
TTAGGGAAGCAATGAGGGGTATCAGGGGCACTGGGCCGCAGTCTGCGTGC
CCATCGGCAACAGACTATGGGAGCTTGGCAGTGGGGCAAGAGTCTGGCGG
CGGTCCAGGGAGCGATGTCCGCCAAGAGGCGTATTACCAAGGCCAAGTCA
ACGAGCCTACGCGGGAAATCCAGATACAAGTGGGGCAAACGGACGGGACG
ATTAGAGATCAAAATTGTGAGCGGGTTGACGTGTAG

Synonyms

Publications