jgi.p|Nanoce1779_2|558477, mRNA_7335 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|558477
Unique Name	mRNA_7335
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2326
Alignment location	scaffold_19:248234..251086 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	558563
Track	FilteredModels2
ProteinId	558477

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_19	supercontig	scaffold_19:248234..251086 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|558477	gene_7335	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|558477	mRNA_7335-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7335	CDS_7335	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_19:248234..251086+
coding sequence from alignment at scaffold_19:248234..251086+

mRNA sequence

>mRNA_7335 ID=mRNA_7335|Name=jgi.p|Nanoce1779_2|558477|organism=Nannochloropsis oceanica|type=mRNA|length=2326bp
ACAGCTGGGCCCCTCTCCACCCACGTGCCCTGCATATCTGCTTATCATGC
GTCCACCACCGCTTGCTAGATCCCTTCAATTTTTCCGCACCATCCCTCTT
CGACCTCAGGCTTGCCTTTCCTGCTCTCGTGCTCCCCCAGTACGCTCCCC
CCCCACGAGCAGAAGCACACCCACCCGGGGTATGATGATGATGTCTGGCC
ATTCCAAGTGGTCCAAAATCAAGCGCGCCAAAGGCTCCAACGACGCTAAA
CGCGCAATCCTCTTCACCAAGCTTGCTGTCGAGCTAACCGAGGCCTCGCG
TCAAGCCAAGGGCGACACGTCCGACATTCGTCTTGCCGCTGCCATCAGTA
AGGCCAAGGCAAACAATGTGCCCAAAGACAACATCGAAGGCGCGATAAAG
AGAGGGGTGGAAGGGAAAGGCTCCACGAACATGGAAGCGGTGACATATGA
AGGCATCGGTCCCGGCTCCACGGCCATCATCATCGAAGCTCTAACTGACA
ACCGCAAGAGGACCGCACCAAACGTACGACATGCCTTCAGTAAGAATGGA
GGAACACTTGGATCGAGCGGAAGCGTTGCTTGGATGTTCGTGAGAAGGGG
GTTGGTGGAGATACCGGAGGAAGGGAGGGAGAAAGGGAGGGGCGAGGAGG
CTTTGTTGGACGATGCCTTGGAAGCGGGGGCGGAGGACGTGGAGGGAGAC
CCGGAGGAGGAATGGGAGGAGGGGGAGGATGAACCGCGGGTGACAAGAGT
GTATTGTGAGCCGGGGGCACTGGCAGGAGTGCGAAAGGGGTTGGAGGAGA
GAGGCTGGAGGCCGTCCTTGGTCCAGTTCGCGTACGTGCCCACCACCTGG
GTGGAGGTGGAGGTGGAGGAGGAGGAAGGGAAGGAGAGGGAGAAGGGGAA
GGTGGCGGTTGTGTCGCCAGGGCAGCAGCTGCTGACGCTACTGGAGGCGC
TGGAGGAGGACCCCGATGTGCAGAATGTCTTTCATAACGCGCGGCTTATT
TGAGAAGGAGAGGCAGCAGCAGGAGCAGCAGGAGCAGCAGGAGCAGCAGG
AGCAGCAGGAGCAGCTTCGATGTGCATAGGCGCATGACTGCATGGATGTC
CACTGTACTTGAAAGTGGGGCTCAAAAAGAAAGAAAACAGCATCATGGCC
AACGTAAGACACTGCAACTGACTACTTTTGCTACATTATCGTGTTTGATT
TACTTCCCTGCTGCCTCGGGCACCAACTCTTCGAAATCAAGTTGATCGCC
TAGGTCCTTGTCCTCCGCCAGCTGTGTTTTGAACCATTCGTCTGTGGACC
ACACCGCCTTGGTGGCCCCCAGCTTGTGCTGCATGGGCTTGGCCACGTTG
CACTTGAGGACGCGGCCGAGCAACTCGGCCCCTTCCATGTTGTCAATAGC
GGCGGCGGCGTCGTCGGCGTTTTCGAAATGTACAAACCCAAAGCCGCGGG
TAGTGTCTTAGAAGAATGAAGAAAGTAAGAAGGGAAGGAGACGATGAGGA
TGAAATACCACGATCATAGTGTGTATAGGTGGGTGGGAAGGGTGTCCTTT
CTTCCTCTCCTCCCTCCCTTCCTCCCTCTCTCCCTCCCTCTTTCCTCCCT
CTTTCCTCCCTCTTCCCTCCCTCCATTCCTCCCAAATTACTTTCTTTGAA
GTCCTTGGGAATATTAACTTCAATTATATTCCCAAATGGGATGAAGGCGG
CGTGTAGTATTTCTTCAGTGCTCTTCTCGTCCAGGCCGCCTGAGGGAGGA
AGGAAAGGGAGGGAGAAGAGAGGAGAGAACGGTAAATGTCAGTAATCACA
GGGCTCGTAGTGAAGGCAATCTGCAGCATCATCACCGTAAGCGTTCCTTG
TCAAGGTACTGAGTGAGGGAGGGAGGGAGGGAAGGGCAGGGAGGAGCGCA
TGGAGCAAAAAGTAATGACATCCGCAAGCAATGAAGGGTCGCGAAAGGGT
TTGGGAAGCACTCTGACTCGACAGCCCCACCTGCCACGCCTCGCTAGAGG
CACTGCGCACTGGTCGGGAGAATGCCTTGTTGCCTTGGCAAGAGAAGGCT
AAGCTGAGGGAGGACGATGAGGGAGGACTAGTGGTGCACTTACCGACGTA
AATGATGCTGTTGTCTTGCTTGGGTTTGGGCTTCGGGTCCATAGCGCGGT
TTGGCCGTCCACTTGTCGCACAGATGCTTGTTGCCCTTGCCTTAGCTGTG
CGCTTGTCTGTGCATCGGAGGGGCATTTATTGATGTGGGTAGAGATGGTC
AGACGTGCGTGCTTGTTGTCATTGAGCCGGGTATGCTTGCAAACTGAAGG
ATGGACTCGGCCTTTCACCCTTCTTT

protein sequence of jgi.p|Nanoce1779_2|558477

>mRNA_7335-protein ID=mRNA_7335-protein|Name=jgi.p|Nanoce1779_2|558477|organism=Nannochloropsis oceanica|type=polypeptide|length=319bp
MRPPPLARSLQFFRTIPLRPQACLSCSRAPPVRSPPTSRSTPTRGMMMMS
GHSKWSKIKRAKGSNDAKRAILFTKLAVELTEASRQAKGDTSDIRLAAAI
SKAKANNVPKDNIEGAIKRGVEGKGSTNMEAVTYEGIGPGSTAIIIEALT
DNRKRTAPNVRHAFSKNGGTLGSSGSVAWMFVRRGLVEIPEEGREKGRGE
EALLDDALEAGAEDVEGDPEEEWEEGEDEPRVTRVYCEPGALAGVRKGLE
ERGWRPSLVQFAYVPTTWVEVEVEEEEGKEREKGKVAVVSPGQQLLTLLE
ALEEDPDVQNVFHNARLI*

mRNA from alignment at scaffold_19:248234..251086+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7335 ID=mRNA_7335|Name=jgi.p|Nanoce1779_2|558477|organism=Nannochloropsis oceanica|type=mRNA|length=2853bp|location=Sequence derived from alignment at scaffold_19:248234..251086+ (Nannochloropsis oceanica)
ACAGCTGGGCCCCTCTCCACCCACGTGCCCTGCATATCTGCTTATCATGC
GTCCACCACCGCTTGCTAGATCCCTTCAATTTTTCCGCACCATCCCTCTT
CGACCTCAGGCTTGCCTTTCCTGCTCTCGTGCTCCCCCAGTACGCTCCCC
CCCCACGAGCAGAAGCACACCCACCCGGGGTATGATGATGATGTCTGGCC
ATTCCAAGTGGTCCAAAATCAAGCGCGCCAAAGGCTCCAACGACGGTACG
TCTCCGTGAAGTGCAGCATTAATTTTGCCAGGCTGTGAATCTTGTAAAAA
GCTTGCCTTTACCCAGTCCCTTACTTCTCCCGCCCTCCCTTCCTTCCTTC
CTTCCTTCCTCCCAAGCTAAACGCGCAATCCTCTTCACCAAGCTTGCTGT
CGAGCTAACCGAGGCCTCGCGTCAAGCCAAGGGCGACACGTCCGACATTC
GTCTTGCCGCTGCCATCAGTAAGGCCAAGGCAAACAATGTGCCCAAAGAC
AACATCGAAGGCGCGATAAAGAGAGGGGTGGAAGGGAAAGGCTCCACGAA
CATGGAAGCGGTGCGTATGTTTGCGGCAGGAGCTTGCATTTCTTCTGTAT
CTCATTTGTCTGCTCGTTTCTTTCCTCTCTACGTCCCTGCGCTTCCTCCC
TCATTTATCCCAATGTCCCTCCCTCCATCCCTCCTTGCGCAGGTGACATA
TGAAGGCATCGGTCCCGGCTCCACGGCCATCATCATCGAAGCTCTAACTG
ACAACCGCAAGAGGACCGCACCAAACGTACGACATGCCTTCAGTAAGAAT
GGAGGAACACTTGGATCGAGCGGAAGCGTTGCTTGGATGTTCGTGAGAAG
GGGGTTGGTGGAGATACCGGAGGAAGGGAGGGAGAAAGGGAGGGGCGAGG
AGGCTTTGTTGGACGATGCCTTGGAAGCGGGGGCGGAGGACGTGGAGGGA
GACCCGGAGGAGGAATGGGAGGAGGGGGAGGATGAACCGCGGGTGACAAG
AGTGTATTGTGAGCCGGGGGCACTGGCAGGAGTGCGAAAGGGGTTGGAGG
AGAGAGGCTGGAGGCCGTCCTTGGTCCAGTTCGCGTACGTGCCCACCACC
TGGGTGGAGGTGGAGGTGGAGGAGGAGGAAGGGAAGGAGAGGGAGAAGGG
GAAGGTGGCGGTTGTGTCGCCAGGGCAGCAGCTGCTGACGCTACTGGAGG
CGCTGGAGGAGGACCCCGATGTGCAGAATGTCTTTCATAACGCGCGGCTT
ATTTGAGAAGGAGAGGCAGCAGCAGGAGCAGCAGGAGCAGCAGGAGCAGC
AGGAGCAGCAGGAGCAGCTTCGATGTGCATAGGCGCATGACTGCATGGAT
GTCCACTGTACTTGAAAGTGGGGCTCAAAAAGGTGAGTGACTCAAGGTAA
CAAACAGATTTCGACATGGGCACCTGCCCTGCTTCCTTTCAAAATATCTC
ATAGCCATAAAACAAAACACAGAAAGAAAACAGCATCATGGCCAACGTAA
GACACTGCAACTGACTACTTTTGCTACATTATCGTGTTTGATTTACTTCC
CTGCTGCCTCGGGCACCAACTCTTCGAAATCAAGTTGATCGCCTAGGTCC
TTGTCCTCCGCCAGCTGTGTTTTGAACCATTCGTCTGTGGACCACACCGC
CTTGGTGGCCCCCAGCTTGTGCTGCATGGGCTTGGCCACGTTGCACTTGA
GGACGCGGCCTGCGGGGATCAGGGAGGGAGGGAGGGGGCCAGGGAGGGAG
GGAGGGAGACACAAATTTCAACAATCAAGCTTTAGAAAATGAATATTTCA
GAGCCTATCAGCAGGTTCAGGCACAGAAGGAGGCGCAATGGACTAGACTA
GAGAGTGCCTGGAAAAGAGGGATAGATAATGAAACGCACGTACCGAGCAA
CTCGGCCCCTTCCATGTTGTCAATAGCGGCGGCGGCGTCGTCGGCGTTTT
CGAAATGTACAAACCCAAAGCCGCGGGTAGTGTCTTAGAAGAATGAAGAA
AGTAAGAAGGGAAGGAGACGATGAGGATGAAATACCACGATCATAGTGTG
TATAGGTGGGTGGGAAGGGTGTCCTTTCTTCCTCTCCTCCCTCCCTTCCT
CCCTCTCTCCCTCCCTCTTTCCTCCCTCTTTCCTCCCTCTTCCCTCCCTC
CATTCCTCCCAAATTACTTTCTTTGAAGTCCTTGGGAATATTAACTTCAA
TTATATTCCCAAATGGGATGAAGGCGGCGTGTAGTATTTCTTCAGTGCTC
TTCTCGTCCAGGCCGCCTGAGGGAGGAAGGAAAGGGAGGGAGAAGAGAGG
AGAGAACGGTAAATGTCAGTAATCACAGGGCTCGTAGTGAAGGCAATCTG
CAGCATCATCACCGTAAGCGTTCCTTGTCAAGGTACTGAGTGAGGGAGGG
AGGGAGGGAAGGGCAGGGAGGAGCGCATGGAGCAAAAAGTAATGACATCC
GCAAGCAATGAAGGGTCGCGAAAGGGTTTGGGAAGCACTCTGACTCGACA
GCCCCACCTGCCACGCCTCGCTAGAGGCACTGCGCACTGGTCGGGAGAAT
GCCTTGTTGCCTTGGCAAGAGAAGGCTAAGCTGAGGGAGGACGATGAGGG
AGGACTAGTGGTGCACTTACCGACGTAAATGATGCTGTTGTCTTGCTTGG
GTTTGGGCTTCGGGTCCATAGCGCGGTTTGGCCGTCCACTTGTCGCACAG
ATGCTTGTTGCCCTTGCCTTAGCTGTGCGCTTGTCTGTGCATCGGAGGGG
CATTTATTGATGTGGGTAGAGATGGTCAGACGTGCGTGCTTGTTGTCATT
GAGCCGGGTATGCTTGCAAACTGAAGGATGGACTCGGCCTTTCACCCTTC
TTT

Coding sequence (CDS) from alignment at scaffold_19:248234..251086+

>mRNA_7335 ID=mRNA_7335|Name=jgi.p|Nanoce1779_2|558477|organism=Nannochloropsis oceanica|type=CDS|length=2871bp|location=Sequence derived from alignment at scaffold_19:248234..251086+ (Nannochloropsis oceanica)
ATGCGTCCACCACCGCTTGCTAGATCCCTTCAATTTTTCCGCACCATCCC
TCTTCGACCTCAGGCTTGCCTTTCCTGCTCTCGTGCTCCCCCAGTACGCT
CCCCCCCCACGAGCAGAAGCACACCCACCCGGGGTATGATGATGATGTCT
GGCCATTCCAAGTGGTCCAAAATCAAGCGCGCCAAAGGCTCCAACGACGC
TAAACGCGCAATCCTCTTCACCAAGCTTGCTGTCGAGCTAACCGAGGCCT
CGCGTCAAGCCAAGGGCGACACGTCCGACATTCGTCTTGCCGCTGCCATC
AGTAAGGCCAAGGCAAACAATGTGCCCAAAGACAACATCGAAGGCGCGAT
AAAGAGAGGGGTGGAAGGGAAAGGCTCCACGAACATGGAAGCGGTGACAT
ATGAAGGCATCGGTCCCGGCTCCACGGCCATCATCATCGAAGCTCTAACT
GACAACCGCAAGAGGACCGCACCAAACGTACGACATGCCTTCAGTAAGAA
TGGAGGAACACTTGGATCGAGCGGAAGCGTTGCTTGGATGTTCGTGAGAA
GGGGGTTGGTGGAGATACCGGAGGAAGGGAGGGAGAAAGGGAGGGGCGAG
GAGGCTTTGTTGGACGATGCCTTGGAAGCGGGGGCGGAGGACGTGGAGGG
AGACCCGGAGGAGGAATGGGAGGAGGGGGAGGATGAACCGCGGGTGACAA
GAGTGTATTGTGAGCCGGGGGCACTGGCAGGAGTGCGAAAGGGGTTGGAG
GAGAGAGGCTGGAGGCCGTCCTTGGTCCAGTTCGCGTACGTGCCCACCAC
CTGGGTGGAGGTGGAGGTGGAGGAGGAGGAAGGGAAGGAGAGGGAGAAGG
GGAAGGTGGCGGTTGTGTCGCCAGGGCAGCAGCTGCTGACGCTACTGGAG
GCGCTGGAGGAGGACCCCGATGTGCAGAATGTCTTTCATAACGCGCGGCT
TATTTGAATGCGTCCACCACCGCTTGCTAGATCCCTTCAATTTTTCCGCA
CCATCCCTCTTCGACCTCAGGCTTGCCTTTCCTGCTCTCGTGCTCCCCCA
GTACGCTCCCCCCCCACGAGCAGAAGCACACCCACCCGGGGTATGATGAT
GATGTCTGGCCATTCCAAGTGGTCCAAAATCAAGCGCGCCAAAGGCTCCA
ACGACGCTAAACGCGCAATCCTCTTCACCAAGCTTGCTGTCGAGCTAACC
GAGGCCTCGCGTCAAGCCAAGGGCGACACGTCCGACATTCGTCTTGCCGC
TGCCATCAGTAAGGCCAAGGCAAACAATGTGCCCAAAGACAACATCGAAG
GCGCGATAAAGAGAGGGGTGGAAGGGAAAGGCTCCACGAACATGGAAGCG
GTGACATATGAAGGCATCGGTCCCGGCTCCACGGCCATCATCATCGAAGC
TCTAACTGACAACCGCAAGAGGACCGCACCAAACGTACGACATGCCTTCA
GTAAGAATGGAGGAACACTTGGATCGAGCGGAAGCGTTGCTTGGATGTTC
GTGAGAAGGGGGTTGGTGGAGATACCGGAGGAAGGGAGGGAGAAAGGGAG
GGGCGAGGAGGCTTTGTTGGACGATGCCTTGGAAGCGGGGGCGGAGGACG
TGGAGGGAGACCCGGAGGAGGAATGGGAGGAGGGGGAGGATGAACCGCGG
GTGACAAGAGTGTATTGTGAGCCGGGGGCACTGGCAGGAGTGCGAAAGGG
GTTGGAGGAGAGAGGCTGGAGGCCGTCCTTGGTCCAGTTCGCGTACGTGC
CCACCACCTGGGTGGAGGTGGAGGTGGAGGAGGAGGAAGGGAAGGAGAGG
GAGAAGGGGAAGGTGGCGGTTGTGTCGCCAGGGCAGCAGCTGCTGACGCT
ACTGGAGGCGCTGGAGGAGGACCCCGATGTGCAGAATGTCTTTCATAACG
CGCGGCTTATTTGAATGCGTCCACCACCGCTTGCTAGATCCCTTCAATTT
TTCCGCACCATCCCTCTTCGACCTCAGGCTTGCCTTTCCTGCTCTCGTGC
TCCCCCAGTACGCTCCCCCCCCACGAGCAGAAGCACACCCACCCGGGGTA
TGATGATGATGTCTGGCCATTCCAAGTGGTCCAAAATCAAGCGCGCCAAA
GGCTCCAACGACGCTAAACGCGCAATCCTCTTCACCAAGCTTGCTGTCGA
GCTAACCGAGGCCTCGCGTCAAGCCAAGGGCGACACGTCCGACATTCGTC
TTGCCGCTGCCATCAGTAAGGCCAAGGCAAACAATGTGCCCAAAGACAAC
ATCGAAGGCGCGATAAAGAGAGGGGTGGAAGGGAAAGGCTCCACGAACAT
GGAAGCGGTGACATATGAAGGCATCGGTCCCGGCTCCACGGCCATCATCA
TCGAAGCTCTAACTGACAACCGCAAGAGGACCGCACCAAACGTACGACAT
GCCTTCAGTAAGAATGGAGGAACACTTGGATCGAGCGGAAGCGTTGCTTG
GATGTTCGTGAGAAGGGGGTTGGTGGAGATACCGGAGGAAGGGAGGGAGA
AAGGGAGGGGCGAGGAGGCTTTGTTGGACGATGCCTTGGAAGCGGGGGCG
GAGGACGTGGAGGGAGACCCGGAGGAGGAATGGGAGGAGGGGGAGGATGA
ACCGCGGGTGACAAGAGTGTATTGTGAGCCGGGGGCACTGGCAGGAGTGC
GAAAGGGGTTGGAGGAGAGAGGCTGGAGGCCGTCCTTGGTCCAGTTCGCG
TACGTGCCCACCACCTGGGTGGAGGTGGAGGTGGAGGAGGAGGAAGGGAA
GGAGAGGGAGAAGGGGAAGGTGGCGGTTGTGTCGCCAGGGCAGCAGCTGC
TGACGCTACTGGAGGCGCTGGAGGAGGACCCCGATGTGCAGAATGTCTTT
CATAACGCGCGGCTTATTTGA

Synonyms

Publications