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Properties
| Property Name | Value |
|---|
| TranscriptId | 575598 |
| Track | FilteredModels2 |
| ProteinId | 575512 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_2 | supercontig | scaffold_2:1342219..1344179 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1145 ID=mRNA_1145|Name=jgi.p|Nanoce1779_2|575512|organism=Nannochloropsis oceanica|type=mRNA|length=1269bp
ACAGCCTCCCATCCCCAAAACACGACGATGCAACTTGTTGGACGTGCCTC
GGTGTTGCTCCTGGCGGCCGTCCTGTTGGCCCCGAAGGCGGCCCAGGCAT
TTAATATGCGGCAACCCATGAAAATGTCAGCCACGGCCACAAAAGCAGGT
GCTACCTCGGAAGACAAGAAAGTGGAGGAGCCCTTGCTGCTGCGGGCAGC
TCGAGGAGAGAAAGTCGAACGCCCCCCCGTATGGATGATGCGGCAAGCCG
GCCGGCACATGGCTGCCTACCGGGAGCTGGTAAAAAAATACCCTACCTTC
AGAGAGCGTTCCGAGATCCCGGATGTGTCCACAGAGATTAGCTTGCAGCC
CTGGCAGGCGTACAAGACTGACGGGGTCATCTTGTTCAGTGACATACTCA
CGCCCCTGCCTGGGATGGGGGTGGAGTTCACGATTGAGGAGAAGACCGGC
CCCAAGATCAAGCCCATCCGCACCTGGGAGGCGGTAAAGCAAATGCGCTT
GATGGACTGCATGGAGACATGCCCATTCGTGCACCAGACGCTGACGGACC
TACGGAAGGAGGTGGGGAACGAGGCCACGGTGCTGGGCTTCGTGGGGTTG
CCCTACACGTTGGCCACGTATCTGGTGGAGGGTTCCAGTTCGAAGGAGTA
CTTGGAGATCAAGAAGATGATGTTTCAGGAGCCGGCGCTGTTGCAGCAGA
TGCTGAGTGTGCTGGCCGACAACATCGGCGAATACGCGTGCTTTCAGATC
GAGAGCGGCGCCCAGGTAATCCAAATCTTCGACTCATGGGCCGGTCACCT
CGCGCCCTTGGACTATGACGTGTTCGCCGCCCCCTACCAACGCCAAGTGA
TTGAAAAGATCAAGGCCAAGCACCCGTCGGTACCTATCATTATGTACATC
AACAAGAGCGGAGCCCTGCTGGAGCGCATGGCGCAAACGGGTGTGGACAT
GGTGTCGTTAGATTGGACCGTTACCATGGAAGAGGGGCGGCGACGCCTGG
GGTCGGAAATGGGGGTGCAAGGGAATTTGGATCCTGCCATTCTATACGCA
CCTAAGGAGGTGATCAAGGAGAGGACGGAGCAGATTTTGAGGGAGGGAAA
AGGTTACAAGCATGTTATGAATCTCGGGCATGGCATTGAAGCGACCACGC
CCGAGGAGAACGCGGCGTTTTTTGTGGAGACGTGCAAGGCGTGGCGGTAT
TAGGGTAGGAAGAGGAGAGATGGAGGGAGGGAGAGAGGGAGGGAGAGAGG
GCGGGAGAGAGAGAGAGAG back to topprotein sequence of jgi.p|Nanoce1779_2|575512 >mRNA_1145-protein ID=mRNA_1145-protein|Name=jgi.p|Nanoce1779_2|575512|organism=Nannochloropsis oceanica|type=polypeptide|length=392bp
MQLVGRASVLLLAAVLLAPKAAQAFNMRQPMKMSATATKAGATSEDKKVE
EPLLLRAARGEKVERPPVWMMRQAGRHMAAYRELVKKYPTFRERSEIPDV
STEISLQPWQAYKTDGVILFSDILTPLPGMGVEFTIEEKTGPKIKPIRTW
EAVKQMRLMDCMETCPFVHQTLTDLRKEVGNEATVLGFVGLPYTLATYLV
EGSSSKEYLEIKKMMFQEPALLQQMLSVLADNIGEYACFQIESGAQVIQI
FDSWAGHLAPLDYDVFAAPYQRQVIEKIKAKHPSVPIIMYINKSGALLER
MAQTGVDMVSLDWTVTMEEGRRRLGSEMGVQGNLDPAILYAPKEVIKERT
EQILREGKGYKHVMNLGHGIEATTPEENAAFFVETCKAWRY* back to topmRNA from alignment at scaffold_2:1342219..1344179+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1145 ID=mRNA_1145|Name=jgi.p|Nanoce1779_2|575512|organism=Nannochloropsis oceanica|type=mRNA|length=1961bp|location=Sequence derived from alignment at scaffold_2:1342219..1344179+ (Nannochloropsis oceanica)
ACAGCCTCCCATCCCCAAAACACGACGATGCAACTTGTTGGACGTGCCTC
GGTGTTGCTCCTGGCGGCCGTCCTGTTGGCCCCGAAGGCGGCCCAGGCAT
TTAATATGCGGCAACCCATGAAAATGTCAGCCACGGCCACAAAAGCAGGT
GCTACCTCGGAAGACAAGAAAGTGGAGGAGCCCTTGCTGCTGCGGGCAGC
TCGAGGAGAGGTGAGTTTTATAGCGGAGGGCTTGAGGTCGATATACGAAG
CTCGGACTGCAACCCTTCGATCCTCGGATATCTGTGTGGGTATGGAATGT
TGCATGATGGTAAATGTATGGACCATGCATTTGTTGCGCAGGCTTGGTGC
GTCAGCTGGCCCTGGCATTAAGCCATGCATGTACTCCCTGCCTGGCTCGC
CTCTCTATGACCCATCCGATCATTCCTGCCTCCGTGCCAGAACAAGGACC
TGCCTTCGCCCTTTACCAACAATATCGTACCCTCGCTCACTTGACCTCTA
TGGACATACCGTCATTAATATTCCGTCTGCTTTTTCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCCTCCCCACCATCACAG
AAAGTCGAACGCCCCCCCGTATGGATGATGCGGCAAGCCGGCCGGCACAT
GGCTGCCTACCGGGAGCTGGTAAAAAAATACCCTACCTTCAGAGAGCGTT
CCGAGATCCCGGATGTGTCCACAGAGATTAGCTTGCAGCCCTGGCAGGCG
TACAAGACTGACGGGGTCATCTTGTTCAGTGACATACTCACGCCCCTGCC
TGGGATGGGGGTGGAGTTCACGATTGAGGAGAAGGTATGTAGGTGGAAGG
AGATGTAAGCTGATGCATGTATACACCTTCTGCTATGCTGTCCTGTCGTC
AATTGCAGTCGTGTGCGTCTCTTTCAAATTGCACACGCTTGCTTATTCTA
CCCCTCGCCCCCATCCCTTCCTCCCTCCCTCCCTCCTCTAGACCGGCCCC
AAGATCAAGCCCATCCGCACCTGGGAGGCGGTAAAGCAAATGCGCTTGAT
GGACTGCATGGAGACATGCCCATTCGTGCACCAGACGCTGACGGACCTAC
GGAAGGAGGTGGGGAACGAGGCCACGGTGCTGGGCTTCGTGGGGTTGCCC
TACACGTTGGCCACGTATCTGGTGGAGGGTTCCAGTTCGAAGGAGTACTT
GGAGATCAAGAAGATGATGTTTCAGGAGCCGGCGCTGTTGCAGCAGATGC
TGAGTGTGCTGGCCGACAACATCGGTGCGTGGGGAGGGACGGAGGGACGG
ATGGACGGAGGGACGAAAGGGAGGAAGGAGGGCACGACTGTCTTCATTCT
TAATACCAGCATAACCCACTCATCCCCTTCTCTTTCCTTCCCTCCCTCCC
TCCCTCATTCCCTCTCCAGGCGAATACGCGTGCTTTCAGATCGAGAGCGG
CGCCCAGGTAATCCAAATCTTCGACTCATGGGCCGGTCACCTCGCGCCCT
TGGACTATGACGTGTTCGCCGCCCCCTACCAACGCCAAGTGATTGAAAAG
ATCAAGGCCAAGCACCCGTCGGTACCTATCATTATGTACATCAACAAGAG
CGGAGCCCTGCTGGAGCGCATGGCGCAAACGGGTGTGGACATGGTGTCGT
TAGATTGGACCGTTACCATGGAAGAGGGGCGGCGACGCCTGGGGTCGGAA
ATGGGGGTGCAAGGGAATTTGGATCCTGCCATTCTATACGCACCTAAGGA
GGTGATCAAGGAGAGGACGGAGCAGATTTTGAGGGAGGGAAAAGGTTACA
AGCATGTTATGAATCTCGGGCATGGCATTGAAGCGACCACGCCCGAGGAG
AACGCGGCGTTTTTTGTGGAGACGTGCAAGGCGTGGCGGTATTAGGGTAG
GAAGAGGAGAGATGGAGGGAGGGAGAGAGGGAGGGAGAGAGGGCGGGAGA
GAGAGAGAGAG back to topCoding sequence (CDS) from alignment at scaffold_2:1342219..1344179+ >mRNA_1145 ID=mRNA_1145|Name=jgi.p|Nanoce1779_2|575512|organism=Nannochloropsis oceanica|type=CDS|length=4704bp|location=Sequence derived from alignment at scaffold_2:1342219..1344179+ (Nannochloropsis oceanica)
ATGCAACTTGTTGGACGTGCCTCGGTGTTGCTCCTGGCGGCCGTCCTGTT
GGCCCCGAAGGCGGCCCAGGCATTTAATATGCGGCAACCCATGAAAATGT
CAGCCACGGCCACAAAAGCAGGTGCTACCTCGGAAGACAAGAAAGTGGAG
GAGCCCTTGCTGCTGCGGGCAGCTCGAGGAGAGAAAGTCGAACGCCCCCC
CGTATGGATGATGCGGCAAGCCGGCCGGCACATGGCTGCCTACCGGGAGC
TGGTAAAAAAATACCCTACCTTCAGAGAGCGTTCCGAGATCCCGGATGTG
TCCACAGAGATTAGCTTGCAGCCCTGGCAGGCGTACAAGACTGACGGGGT
CATCTTGTTCAGTGACATACTCACGCCCCTGCCTGGGATGGGGGTGGAGT
TCACGATTGAGGAGAAGACCGGCCCCAAGATCAAGCCCATCCGCACCTGG
GAGGCGGTAAAGCAAATGCGCTTGATGGACTGCATGGAGACATGCCCATT
CGTGCACCAGACGCTGACGGACCTACGGAAGGAGGTGGGGAACGAGGCCA
CGGTGCTGGGCTTCGTGGGGTTGCCCTACACGTTGGCCACGTATCTGGTG
GAGGGTTCCAGTTCGAAGGAGTACTTGGAGATCAAGAAGATGATGTTTCA
GGAGCCGGCGCTGTTGCAGCAGATGCTGAGTGTGCTGGCCGACAACATCG
GCGAATACGCGTGCTTTCAGATCGAGAGCGGCGCCCAGGTAATCCAAATC
TTCGACTCATGGGCCGGTCACCTCGCGCCCTTGGACTATGACGTGTTCGC
CGCCCCCTACCAACGCCAAGTGATTGAAAAGATCAAGGCCAAGCACCCGT
CGGTACCTATCATTATGTACATCAACAAGAGCGGAGCCCTGCTGGAGCGC
ATGGCGCAAACGGGTGTGGACATGGTGTCGTTAGATTGGACCGTTACCAT
GGAAGAGGGGCGGCGACGCCTGGGGTCGGAAATGGGGGTGCAAGGGAATT
TGGATCCTGCCATTCTATACGCACCTAAGGAGGTGATCAAGGAGAGGACG
GAGCAGATTTTGAGGGAGGGAAAAGGTTACAAGCATGTTATGAATCTCGG
GCATGGCATTGAAGCGACCACGCCCGAGGAGAACGCGGCGTTTTTTGTGG
AGACGTGCAAGGCGTGGCGGTATTAGATGCAACTTGTTGGACGTGCCTCG
GTGTTGCTCCTGGCGGCCGTCCTGTTGGCCCCGAAGGCGGCCCAGGCATT
TAATATGCGGCAACCCATGAAAATGTCAGCCACGGCCACAAAAGCAGGTG
CTACCTCGGAAGACAAGAAAGTGGAGGAGCCCTTGCTGCTGCGGGCAGCT
CGAGGAGAGAAAGTCGAACGCCCCCCCGTATGGATGATGCGGCAAGCCGG
CCGGCACATGGCTGCCTACCGGGAGCTGGTAAAAAAATACCCTACCTTCA
GAGAGCGTTCCGAGATCCCGGATGTGTCCACAGAGATTAGCTTGCAGCCC
TGGCAGGCGTACAAGACTGACGGGGTCATCTTGTTCAGTGACATACTCAC
GCCCCTGCCTGGGATGGGGGTGGAGTTCACGATTGAGGAGAAGACCGGCC
CCAAGATCAAGCCCATCCGCACCTGGGAGGCGGTAAAGCAAATGCGCTTG
ATGGACTGCATGGAGACATGCCCATTCGTGCACCAGACGCTGACGGACCT
ACGGAAGGAGGTGGGGAACGAGGCCACGGTGCTGGGCTTCGTGGGGTTGC
CCTACACGTTGGCCACGTATCTGGTGGAGGGTTCCAGTTCGAAGGAGTAC
TTGGAGATCAAGAAGATGATGTTTCAGGAGCCGGCGCTGTTGCAGCAGAT
GCTGAGTGTGCTGGCCGACAACATCGGCGAATACGCGTGCTTTCAGATCG
AGAGCGGCGCCCAGGTAATCCAAATCTTCGACTCATGGGCCGGTCACCTC
GCGCCCTTGGACTATGACGTGTTCGCCGCCCCCTACCAACGCCAAGTGAT
TGAAAAGATCAAGGCCAAGCACCCGTCGGTACCTATCATTATGTACATCA
ACAAGAGCGGAGCCCTGCTGGAGCGCATGGCGCAAACGGGTGTGGACATG
GTGTCGTTAGATTGGACCGTTACCATGGAAGAGGGGCGGCGACGCCTGGG
GTCGGAAATGGGGGTGCAAGGGAATTTGGATCCTGCCATTCTATACGCAC
CTAAGGAGGTGATCAAGGAGAGGACGGAGCAGATTTTGAGGGAGGGAAAA
GGTTACAAGCATGTTATGAATCTCGGGCATGGCATTGAAGCGACCACGCC
CGAGGAGAACGCGGCGTTTTTTGTGGAGACGTGCAAGGCGTGGCGGTATT
AGATGCAACTTGTTGGACGTGCCTCGGTGTTGCTCCTGGCGGCCGTCCTG
TTGGCCCCGAAGGCGGCCCAGGCATTTAATATGCGGCAACCCATGAAAAT
GTCAGCCACGGCCACAAAAGCAGGTGCTACCTCGGAAGACAAGAAAGTGG
AGGAGCCCTTGCTGCTGCGGGCAGCTCGAGGAGAGAAAGTCGAACGCCCC
CCCGTATGGATGATGCGGCAAGCCGGCCGGCACATGGCTGCCTACCGGGA
GCTGGTAAAAAAATACCCTACCTTCAGAGAGCGTTCCGAGATCCCGGATG
TGTCCACAGAGATTAGCTTGCAGCCCTGGCAGGCGTACAAGACTGACGGG
GTCATCTTGTTCAGTGACATACTCACGCCCCTGCCTGGGATGGGGGTGGA
GTTCACGATTGAGGAGAAGACCGGCCCCAAGATCAAGCCCATCCGCACCT
GGGAGGCGGTAAAGCAAATGCGCTTGATGGACTGCATGGAGACATGCCCA
TTCGTGCACCAGACGCTGACGGACCTACGGAAGGAGGTGGGGAACGAGGC
CACGGTGCTGGGCTTCGTGGGGTTGCCCTACACGTTGGCCACGTATCTGG
TGGAGGGTTCCAGTTCGAAGGAGTACTTGGAGATCAAGAAGATGATGTTT
CAGGAGCCGGCGCTGTTGCAGCAGATGCTGAGTGTGCTGGCCGACAACAT
CGGCGAATACGCGTGCTTTCAGATCGAGAGCGGCGCCCAGGTAATCCAAA
TCTTCGACTCATGGGCCGGTCACCTCGCGCCCTTGGACTATGACGTGTTC
GCCGCCCCCTACCAACGCCAAGTGATTGAAAAGATCAAGGCCAAGCACCC
GTCGGTACCTATCATTATGTACATCAACAAGAGCGGAGCCCTGCTGGAGC
GCATGGCGCAAACGGGTGTGGACATGGTGTCGTTAGATTGGACCGTTACC
ATGGAAGAGGGGCGGCGACGCCTGGGGTCGGAAATGGGGGTGCAAGGGAA
TTTGGATCCTGCCATTCTATACGCACCTAAGGAGGTGATCAAGGAGAGGA
CGGAGCAGATTTTGAGGGAGGGAAAAGGTTACAAGCATGTTATGAATCTC
GGGCATGGCATTGAAGCGACCACGCCCGAGGAGAACGCGGCGTTTTTTGT
GGAGACGTGCAAGGCGTGGCGGTATTAGATGCAACTTGTTGGACGTGCCT
CGGTGTTGCTCCTGGCGGCCGTCCTGTTGGCCCCGAAGGCGGCCCAGGCA
TTTAATATGCGGCAACCCATGAAAATGTCAGCCACGGCCACAAAAGCAGG
TGCTACCTCGGAAGACAAGAAAGTGGAGGAGCCCTTGCTGCTGCGGGCAG
CTCGAGGAGAGAAAGTCGAACGCCCCCCCGTATGGATGATGCGGCAAGCC
GGCCGGCACATGGCTGCCTACCGGGAGCTGGTAAAAAAATACCCTACCTT
CAGAGAGCGTTCCGAGATCCCGGATGTGTCCACAGAGATTAGCTTGCAGC
CCTGGCAGGCGTACAAGACTGACGGGGTCATCTTGTTCAGTGACATACTC
ACGCCCCTGCCTGGGATGGGGGTGGAGTTCACGATTGAGGAGAAGACCGG
CCCCAAGATCAAGCCCATCCGCACCTGGGAGGCGGTAAAGCAAATGCGCT
TGATGGACTGCATGGAGACATGCCCATTCGTGCACCAGACGCTGACGGAC
CTACGGAAGGAGGTGGGGAACGAGGCCACGGTGCTGGGCTTCGTGGGGTT
GCCCTACACGTTGGCCACGTATCTGGTGGAGGGTTCCAGTTCGAAGGAGT
ACTTGGAGATCAAGAAGATGATGTTTCAGGAGCCGGCGCTGTTGCAGCAG
ATGCTGAGTGTGCTGGCCGACAACATCGGCGAATACGCGTGCTTTCAGAT
CGAGAGCGGCGCCCAGGTAATCCAAATCTTCGACTCATGGGCCGGTCACC
TCGCGCCCTTGGACTATGACGTGTTCGCCGCCCCCTACCAACGCCAAGTG
ATTGAAAAGATCAAGGCCAAGCACCCGTCGGTACCTATCATTATGTACAT
CAACAAGAGCGGAGCCCTGCTGGAGCGCATGGCGCAAACGGGTGTGGACA
TGGTGTCGTTAGATTGGACCGTTACCATGGAAGAGGGGCGGCGACGCCTG
GGGTCGGAAATGGGGGTGCAAGGGAATTTGGATCCTGCCATTCTATACGC
ACCTAAGGAGGTGATCAAGGAGAGGACGGAGCAGATTTTGAGGGAGGGAA
AAGGTTACAAGCATGTTATGAATCTCGGGCATGGCATTGAAGCGACCACG
CCCGAGGAGAACGCGGCGTTTTTTGTGGAGACGTGCAAGGCGTGGCGGTA
TTAG back to top
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