jgi.p|Nanoce1779_2|575512, gene_1145 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575512
Unique Namegene_1145
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_2:1342219..1344179 +

Link to JBrowse

Properties
Property NameValue
TranscriptId575598
ProteinId575512
Product namechloroplast uroporphyrinogen decarboxylase
Portal idNanoce1779_2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:1342219..1344179 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004853uroporphyrinogen decarboxylase activity
Vocabulary: Biological Process
TermDefinition
GO:0006779porphyrin-containing compound biosynthetic process
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL032ncniL032Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G05580NO02G05580Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575512mRNA_1145-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575512mRNA_1145Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|575512

>mRNA_1145-protein ID=mRNA_1145-protein|Name=jgi.p|Nanoce1779_2|575512|organism=Nannochloropsis oceanica|type=polypeptide|length=392bp
MQLVGRASVLLLAAVLLAPKAAQAFNMRQPMKMSATATKAGATSEDKKVE
EPLLLRAARGEKVERPPVWMMRQAGRHMAAYRELVKKYPTFRERSEIPDV
STEISLQPWQAYKTDGVILFSDILTPLPGMGVEFTIEEKTGPKIKPIRTW
EAVKQMRLMDCMETCPFVHQTLTDLRKEVGNEATVLGFVGLPYTLATYLV
EGSSSKEYLEIKKMMFQEPALLQQMLSVLADNIGEYACFQIESGAQVIQI
FDSWAGHLAPLDYDVFAAPYQRQVIEKIKAKHPSVPIIMYINKSGALLER
MAQTGVDMVSLDWTVTMEEGRRRLGSEMGVQGNLDPAILYAPKEVIKERT
EQILREGKGYKHVMNLGHGIEATTPEENAAFFVETCKAWRY*
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Synonyms
Publications