jgi.p|Nanoce1779_2|611084, mRNA_10339 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|611084
Unique Name	mRNA_10339
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2666
Alignment location	scaffold_54:24281..26946 -

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Properties


Property Name	Value
TranscriptId	611170
Track	FilteredModels2
ProteinId	611084

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_54	supercontig	scaffold_54:24281..26946 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|611084	gene_10339	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|611084	mRNA_10339-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10339	CDS_10339	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_54:24281..26946-
coding sequence from alignment at scaffold_54:24281..26946-

mRNA sequence

>mRNA_10339 ID=mRNA_10339|Name=jgi.p|Nanoce1779_2|611084|organism=Nannochloropsis oceanica|type=mRNA|length=2666bp
GTGGCGCCGGCAATAGCGGACCTCTTCCTCCCACGCCCAAGAAAATGAAA
GAAACTCAGTTGGGTTGTGCCTGGAGTGCCGCCGTTACAGCTGCTACTTA
CAACATCGCCTTCCCCGATTTGAACTGCGTATACCAGGTTCTGCTCTACT
GGGGCGTGACGGGCAAGACCACTTTGCGGATCGACGGACTATTTCCCCAT
GTGCGCTACTTTTCCTTTCAGAGCTATGACTTGCAGAGTGGAACCCCCAT
TGCTTCACTCATCGACTACGAGATAAAGGCTTTGAAAGGTATCAACCCGT
TCAACACCGAGCCGTTGAGACGGGGGAAGTGGGATGCCAGCCGTGCCAGT
GGCAGGCAGGGACAACTCGGCGAGGGATGGGACAACGATAACTACGAAGT
GGCTAGACCCTATGATAAAGCTGGCTACAAGAGGGTAAGGGATAGAAACT
ATGCGCAAGCGGAGCGCGGTCGGGACAGAAGGGGAGGCAAATACAGCGAC
GACGACACCAAGGACTCCTCTTCGTCATGGGAGACAGCGAGCAATGATGA
AGATACATCAACTACTGAGGCTTCTTCCTCGAAGACTACTTCATCTAGCT
ACGGTAGCTACCAAATCCATGTTACCGACGATGGTAACCATGGGTTTCCG
AACGAACTCGCAGCGAGTAGTAGCAGTGCTGGACGTTCGTTTCACCGGCA
GTGCGGAGCAAAAGGCTGCGTGGCCTTGGTTATCATGCGACTCTATACAG
CAGAACCAGGCGAGGATGCTTTTCATCACAACAACCAAGAGGATTATAAT
CGTACCAATGCAACTAGTCGACTTTGGGGCTATGTACCGCGGCCTGAAGT
CAGCGTCCGCTACGGTGCATGGGTGAATGAGTGGACGGGCAACACGATGG
AACGCTACAAAATCCTCGAATCATGTCATGATGATAAGTCCACCGTAGTC
AAGTCGTTCCTAGACTGGAAGATACCACAGATCCAGGGCGATTGGAGTGG
ACAATCAGCGCTCGACAACTTGGACGACAATTTTGTGGTATACACCCCCA
GCAGCTCTAGCCGGGCATTGTTTGCCAATGCCGACGCCAGCTACTTGTTT
GCGACTGCCCGGAATAATCGCAGTGTCTCGGCGATAAATCAAGGTAGCGG
GTCTCAACGAAAGGAGCTGGTGGCGCGCATTACTGGCCGACTTCCGACCG
TGGCGCACGGTTTTATGGAGCCGCAGACTTTGTATGATGACAAGAGCGAT
GAAGACTTTCATGACATTGATAAAAATAGAAAATTGCAGCCGCATCGTAT
AATCGCGGACTTAGAAAGCTACGAGGCCCGATATGTGTCGTTGAGCACGA
TTGCTCTGAAGGGAGCAGGACCTGTAATTGACACGATAATGGATGTCGTT
ATGGAGCAGAAATACCAGGGGCAAGAGGGCTGGGACCTCGATCGGCAATT
CTCTGTCGTCGCCGCGCCCGGCGCACGCCTTTTAGATCGCTGTCCTCCCC
GCATCTATCGATCGGATCGCGACCTGTTCCTCAAGACAGTCCAACCGGAA
GAAAGAGAACCGCCCGCCCATTTGGCATTCTTGTACCGACAGATTCTGTC
GCAGTGGCAAACGCGGGGCCGTTTGGACAAATCCATCGCGCGAGCGAAGC
ACGACTGTCTAGGACGTAACGATGGCGGCCATGCATGCAAACTCCGTTCC
TTTTTTGTCGATCAGATGGGTCAGCAATATCCAAGCATCAAATATTTCTA
TTGTTGGGAAAATGTGACACGTGGATGCAGCTGCGAGGATTCAACAGGGA
AAATGGTTGGGTGGGGGAATGAGAACGATGCAGATGATGTCGACGACGAT
TTGTGGAGCTTTCCTCACCATCACCACCATAACCACAACCACAACCAATA
TCTTTTCGACGATAATGGTGAGAAATTGGAGCATAACCATCTGGACTTTA
TGCAAGGCAACAGTGAGAAAAAGGCAAACAATATCAGCAGTGGTGGCCTC
GTAACGGAGATCGGCAACAAAACCGTTGTGCCCTGGGACCCAGTCATACC
CACAGCGCTTATTACGCCAGTAGCATCTTTGGAGCATATGAATGAATCTA
TAGCACCAATGCAGCCCGTCGCATCCGTGAAGTCAGTCACAGCTGCTGTG
CCCAAGATGCTGGCAGTGCCCATGAAGACCGAGACTCCACTGTCGCCCAT
GATGGACACGCCAGTGGACCCAGTCATAAACGAAAGTGTCTCTGTCTTTG
TCATACCGGATCCTTCAATGGCCCTCAATGTTTCGAACCTATCGGGTGGC
GTGCATCCTGATGCCTGGAATCAGTCACAGGCATATTACTACTACATGCA
ACATCAGAAAGACAGTAATCCTCAAGCCATCTTCGACGACGACAGAAAGG
AAAGCACGCTTCTTGTCGCCCAAAATAAAAACCAAAAAGAGAGCAAGCTT
CTTGTTGCTGCCGATGATTTGATCAGAGAGCGGCAGCATGGGGAGCAGAA
GCAGCTGCAAGAGCATCACGAACAGGGGCAAGAAATGCAGCACGGCCTTG
AAGAGCAGCAGTACCATGTGAAAGAGCCGCTACAAGTAAACGAGACAAAG
TCGAACGAAGGCAACAAAATTTAAACGTACATGACATTCAGCGAGGCTAA
TATTCAAGGTGGTAGA

protein sequence of jgi.p|Nanoce1779_2|611084

>mRNA_10339-protein ID=mRNA_10339-protein|Name=jgi.p|Nanoce1779_2|611084|organism=Nannochloropsis oceanica|type=polypeptide|length=860bp
MKETQLGCAWSAAVTAATYNIAFPDLNCVYQVLLYWGVTGKTTLRIDGLF
PHVRYFSFQSYDLQSGTPIASLIDYEIKALKGINPFNTEPLRRGKWDASR
ASGRQGQLGEGWDNDNYEVARPYDKAGYKRVRDRNYAQAERGRDRRGGKY
SDDDTKDSSSSWETASNDEDTSTTEASSSKTTSSSYGSYQIHVTDDGNHG
FPNELAASSSSAGRSFHRQCGAKGCVALVIMRLYTAEPGEDAFHHNNQED
YNRTNATSRLWGYVPRPEVSVRYGAWVNEWTGNTMERYKILESCHDDKST
VVKSFLDWKIPQIQGDWSGQSALDNLDDNFVVYTPSSSSRALFANADASY
LFATARNNRSVSAINQGSGSQRKELVARITGRLPTVAHGFMEPQTLYDDK
SDEDFHDIDKNRKLQPHRIIADLESYEARYVSLSTIALKGAGPVIDTIMD
VVMEQKYQGQEGWDLDRQFSVVAAPGARLLDRCPPRIYRSDRDLFLKTVQ
PEEREPPAHLAFLYRQILSQWQTRGRLDKSIARAKHDCLGRNDGGHACKL
RSFFVDQMGQQYPSIKYFYCWENVTRGCSCEDSTGKMVGWGNENDADDVD
DDLWSFPHHHHHNHNHNQYLFDDNGEKLEHNHLDFMQGNSEKKANNISSG
GLVTEIGNKTVVPWDPVIPTALITPVASLEHMNESIAPMQPVASVKSVTA
AVPKMLAVPMKTETPLSPMMDTPVDPVINESVSVFVIPDPSMALNVSNLS
GGVHPDAWNQSQAYYYYMQHQKDSNPQAIFDDDRKESTLLVAQNKNQKES
KLLVAADDLIRERQHGEQKQLQEHHEQGQEMQHGLEEQQYHVKEPLQVNE
TKSNEGNKI*

mRNA from alignment at scaffold_54:24281..26946-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10339 ID=mRNA_10339|Name=jgi.p|Nanoce1779_2|611084|organism=Nannochloropsis oceanica|type=mRNA|length=2666bp|location=Sequence derived from alignment at scaffold_54:24281..26946- (Nannochloropsis oceanica)
GTGGCGCCGGCAATAGCGGACCTCTTCCTCCCACGCCCAAGAAAATGAAA
GAAACTCAGTTGGGTTGTGCCTGGAGTGCCGCCGTTACAGCTGCTACTTA
CAACATCGCCTTCCCCGATTTGAACTGCGTATACCAGGTTCTGCTCTACT
GGGGCGTGACGGGCAAGACCACTTTGCGGATCGACGGACTATTTCCCCAT
GTGCGCTACTTTTCCTTTCAGAGCTATGACTTGCAGAGTGGAACCCCCAT
TGCTTCACTCATCGACTACGAGATAAAGGCTTTGAAAGGTATCAACCCGT
TCAACACCGAGCCGTTGAGACGGGGGAAGTGGGATGCCAGCCGTGCCAGT
GGCAGGCAGGGACAACTCGGCGAGGGATGGGACAACGATAACTACGAAGT
GGCTAGACCCTATGATAAAGCTGGCTACAAGAGGGTAAGGGATAGAAACT
ATGCGCAAGCGGAGCGCGGTCGGGACAGAAGGGGAGGCAAATACAGCGAC
GACGACACCAAGGACTCCTCTTCGTCATGGGAGACAGCGAGCAATGATGA
AGATACATCAACTACTGAGGCTTCTTCCTCGAAGACTACTTCATCTAGCT
ACGGTAGCTACCAAATCCATGTTACCGACGATGGTAACCATGGGTTTCCG
AACGAACTCGCAGCGAGTAGTAGCAGTGCTGGACGTTCGTTTCACCGGCA
GTGCGGAGCAAAAGGCTGCGTGGCCTTGGTTATCATGCGACTCTATACAG
CAGAACCAGGCGAGGATGCTTTTCATCACAACAACCAAGAGGATTATAAT
CGTACCAATGCAACTAGTCGACTTTGGGGCTATGTACCGCGGCCTGAAGT
CAGCGTCCGCTACGGTGCATGGGTGAATGAGTGGACGGGCAACACGATGG
AACGCTACAAAATCCTCGAATCATGTCATGATGATAAGTCCACCGTAGTC
AAGTCGTTCCTAGACTGGAAGATACCACAGATCCAGGGCGATTGGAGTGG
ACAATCAGCGCTCGACAACTTGGACGACAATTTTGTGGTATACACCCCCA
GCAGCTCTAGCCGGGCATTGTTTGCCAATGCCGACGCCAGCTACTTGTTT
GCGACTGCCCGGAATAATCGCAGTGTCTCGGCGATAAATCAAGGTAGCGG
GTCTCAACGAAAGGAGCTGGTGGCGCGCATTACTGGCCGACTTCCGACCG
TGGCGCACGGTTTTATGGAGCCGCAGACTTTGTATGATGACAAGAGCGAT
GAAGACTTTCATGACATTGATAAAAATAGAAAATTGCAGCCGCATCGTAT
AATCGCGGACTTAGAAAGCTACGAGGCCCGATATGTGTCGTTGAGCACGA
TTGCTCTGAAGGGAGCAGGACCTGTAATTGACACGATAATGGATGTCGTT
ATGGAGCAGAAATACCAGGGGCAAGAGGGCTGGGACCTCGATCGGCAATT
CTCTGTCGTCGCCGCGCCCGGCGCACGCCTTTTAGATCGCTGTCCTCCCC
GCATCTATCGATCGGATCGCGACCTGTTCCTCAAGACAGTCCAACCGGAA
GAAAGAGAACCGCCCGCCCATTTGGCATTCTTGTACCGACAGATTCTGTC
GCAGTGGCAAACGCGGGGCCGTTTGGACAAATCCATCGCGCGAGCGAAGC
ACGACTGTCTAGGACGTAACGATGGCGGCCATGCATGCAAACTCCGTTCC
TTTTTTGTCGATCAGATGGGTCAGCAATATCCAAGCATCAAATATTTCTA
TTGTTGGGAAAATGTGACACGTGGATGCAGCTGCGAGGATTCAACAGGGA
AAATGGTTGGGTGGGGGAATGAGAACGATGCAGATGATGTCGACGACGAT
TTGTGGAGCTTTCCTCACCATCACCACCATAACCACAACCACAACCAATA
TCTTTTCGACGATAATGGTGAGAAATTGGAGCATAACCATCTGGACTTTA
TGCAAGGCAACAGTGAGAAAAAGGCAAACAATATCAGCAGTGGTGGCCTC
GTAACGGAGATCGGCAACAAAACCGTTGTGCCCTGGGACCCAGTCATACC
CACAGCGCTTATTACGCCAGTAGCATCTTTGGAGCATATGAATGAATCTA
TAGCACCAATGCAGCCCGTCGCATCCGTGAAGTCAGTCACAGCTGCTGTG
CCCAAGATGCTGGCAGTGCCCATGAAGACCGAGACTCCACTGTCGCCCAT
GATGGACACGCCAGTGGACCCAGTCATAAACGAAAGTGTCTCTGTCTTTG
TCATACCGGATCCTTCAATGGCCCTCAATGTTTCGAACCTATCGGGTGGC
GTGCATCCTGATGCCTGGAATCAGTCACAGGCATATTACTACTACATGCA
ACATCAGAAAGACAGTAATCCTCAAGCCATCTTCGACGACGACAGAAAGG
AAAGCACGCTTCTTGTCGCCCAAAATAAAAACCAAAAAGAGAGCAAGCTT
CTTGTTGCTGCCGATGATTTGATCAGAGAGCGGCAGCATGGGGAGCAGAA
GCAGCTGCAAGAGCATCACGAACAGGGGCAAGAAATGCAGCACGGCCTTG
AAGAGCAGCAGTACCATGTGAAAGAGCCGCTACAAGTAAACGAGACAAAG
TCGAACGAAGGCAACAAAATTTAAACGTACATGACATTCAGCGAGGCTAA
TATTCAAGGTGGTAGA

Coding sequence (CDS) from alignment at scaffold_54:24281..26946-

>mRNA_10339 ID=mRNA_10339|Name=jgi.p|Nanoce1779_2|611084|organism=Nannochloropsis oceanica|type=CDS|length=2580bp|location=Sequence derived from alignment at scaffold_54:24281..26946- (Nannochloropsis oceanica)
ATGAAAGAAACTCAGTTGGGTTGTGCCTGGAGTGCCGCCGTTACAGCTGC
TACTTACAACATCGCCTTCCCCGATTTGAACTGCGTATACCAGGTTCTGC
TCTACTGGGGCGTGACGGGCAAGACCACTTTGCGGATCGACGGACTATTT
CCCCATGTGCGCTACTTTTCCTTTCAGAGCTATGACTTGCAGAGTGGAAC
CCCCATTGCTTCACTCATCGACTACGAGATAAAGGCTTTGAAAGGTATCA
ACCCGTTCAACACCGAGCCGTTGAGACGGGGGAAGTGGGATGCCAGCCGT
GCCAGTGGCAGGCAGGGACAACTCGGCGAGGGATGGGACAACGATAACTA
CGAAGTGGCTAGACCCTATGATAAAGCTGGCTACAAGAGGGTAAGGGATA
GAAACTATGCGCAAGCGGAGCGCGGTCGGGACAGAAGGGGAGGCAAATAC
AGCGACGACGACACCAAGGACTCCTCTTCGTCATGGGAGACAGCGAGCAA
TGATGAAGATACATCAACTACTGAGGCTTCTTCCTCGAAGACTACTTCAT
CTAGCTACGGTAGCTACCAAATCCATGTTACCGACGATGGTAACCATGGG
TTTCCGAACGAACTCGCAGCGAGTAGTAGCAGTGCTGGACGTTCGTTTCA
CCGGCAGTGCGGAGCAAAAGGCTGCGTGGCCTTGGTTATCATGCGACTCT
ATACAGCAGAACCAGGCGAGGATGCTTTTCATCACAACAACCAAGAGGAT
TATAATCGTACCAATGCAACTAGTCGACTTTGGGGCTATGTACCGCGGCC
TGAAGTCAGCGTCCGCTACGGTGCATGGGTGAATGAGTGGACGGGCAACA
CGATGGAACGCTACAAAATCCTCGAATCATGTCATGATGATAAGTCCACC
GTAGTCAAGTCGTTCCTAGACTGGAAGATACCACAGATCCAGGGCGATTG
GAGTGGACAATCAGCGCTCGACAACTTGGACGACAATTTTGTGGTATACA
CCCCCAGCAGCTCTAGCCGGGCATTGTTTGCCAATGCCGACGCCAGCTAC
TTGTTTGCGACTGCCCGGAATAATCGCAGTGTCTCGGCGATAAATCAAGG
TAGCGGGTCTCAACGAAAGGAGCTGGTGGCGCGCATTACTGGCCGACTTC
CGACCGTGGCGCACGGTTTTATGGAGCCGCAGACTTTGTATGATGACAAG
AGCGATGAAGACTTTCATGACATTGATAAAAATAGAAAATTGCAGCCGCA
TCGTATAATCGCGGACTTAGAAAGCTACGAGGCCCGATATGTGTCGTTGA
GCACGATTGCTCTGAAGGGAGCAGGACCTGTAATTGACACGATAATGGAT
GTCGTTATGGAGCAGAAATACCAGGGGCAAGAGGGCTGGGACCTCGATCG
GCAATTCTCTGTCGTCGCCGCGCCCGGCGCACGCCTTTTAGATCGCTGTC
CTCCCCGCATCTATCGATCGGATCGCGACCTGTTCCTCAAGACAGTCCAA
CCGGAAGAAAGAGAACCGCCCGCCCATTTGGCATTCTTGTACCGACAGAT
TCTGTCGCAGTGGCAAACGCGGGGCCGTTTGGACAAATCCATCGCGCGAG
CGAAGCACGACTGTCTAGGACGTAACGATGGCGGCCATGCATGCAAACTC
CGTTCCTTTTTTGTCGATCAGATGGGTCAGCAATATCCAAGCATCAAATA
TTTCTATTGTTGGGAAAATGTGACACGTGGATGCAGCTGCGAGGATTCAA
CAGGGAAAATGGTTGGGTGGGGGAATGAGAACGATGCAGATGATGTCGAC
GACGATTTGTGGAGCTTTCCTCACCATCACCACCATAACCACAACCACAA
CCAATATCTTTTCGACGATAATGGTGAGAAATTGGAGCATAACCATCTGG
ACTTTATGCAAGGCAACAGTGAGAAAAAGGCAAACAATATCAGCAGTGGT
GGCCTCGTAACGGAGATCGGCAACAAAACCGTTGTGCCCTGGGACCCAGT
CATACCCACAGCGCTTATTACGCCAGTAGCATCTTTGGAGCATATGAATG
AATCTATAGCACCAATGCAGCCCGTCGCATCCGTGAAGTCAGTCACAGCT
GCTGTGCCCAAGATGCTGGCAGTGCCCATGAAGACCGAGACTCCACTGTC
GCCCATGATGGACACGCCAGTGGACCCAGTCATAAACGAAAGTGTCTCTG
TCTTTGTCATACCGGATCCTTCAATGGCCCTCAATGTTTCGAACCTATCG
GGTGGCGTGCATCCTGATGCCTGGAATCAGTCACAGGCATATTACTACTA
CATGCAACATCAGAAAGACAGTAATCCTCAAGCCATCTTCGACGACGACA
GAAAGGAAAGCACGCTTCTTGTCGCCCAAAATAAAAACCAAAAAGAGAGC
AAGCTTCTTGTTGCTGCCGATGATTTGATCAGAGAGCGGCAGCATGGGGA
GCAGAAGCAGCTGCAAGAGCATCACGAACAGGGGCAAGAAATGCAGCACG
GCCTTGAAGAGCAGCAGTACCATGTGAAAGAGCCGCTACAAGTAAACGAG
ACAAAGTCGAACGAAGGCAACAAAATTTAA

Synonyms

Publications