jgi.p|Nanoce1779_2|611444, mRNA_10591 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611444
Unique NamemRNA_10591
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length607
Alignment locationscaffold_56:61761..62367 -

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Properties
Property NameValue
TranscriptId611530
TrackFilteredModels2
ProteinId611444
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_56supercontigscaffold_56:61761..62367 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611444gene_10591Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611444mRNA_10591-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10591CDS_10591Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10591 ID=mRNA_10591|Name=jgi.p|Nanoce1779_2|611444|organism=Nannochloropsis oceanica|type=mRNA|length=607bp
ACAGACCTTAACCCGATAAAGAAACAATGGCCGCATGGCGTGCCTCCATT
TCAAAGCACGTGCGGGAGCTGCGCTTCCTTATCAGCGCCTCGGAGGAGAG
CAGTGCCGCGGCCCGCTCTTACATCAAGAAAAACTACGACGAACTCAAGA
TGCTCAACCCCAAGACCCCCTTCCTCGTGCGTGACGGGTGGCCAGGAAAG
GACCCATACATAGTAGCGACGTATGACTGGGGGAAGGAAGTGAGCAAGAC
CATTGGGGGCCTGGACGAGAAGGGAATTGATGCTCTGTTGAAAGGCTTGG
TGGAGGAAGGAAAGAGCCTGCCCAAATTTACCCACCCGCCGCTGAACGGC
ACGCCCGACGCAATTGTCGACGCGCTGCCACGGGACGCATTTTATTGAGC
GGTGAGAGCAGTTGAGCAATGGGAATTGATATGTGTGTGTACTTAGGATG
TCAATGGCCGCGAGAAAGGTGCTGACGCGGGGAGCTAGATAGTGAGATAG
CGTGTGATGTGAGGAGGCGGCGGGTAAATGGCACCTTCTGACTCGAAGGA
AGATAGAAACAAACCTTGAACACAAGAGAAGATCAGGCAAGCCAGATAAA
ATGCCAC
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protein sequence of jgi.p|Nanoce1779_2|611444

>mRNA_10591-protein ID=mRNA_10591-protein|Name=jgi.p|Nanoce1779_2|611444|organism=Nannochloropsis oceanica|type=polypeptide|length=124bp
MAAWRASISKHVRELRFLISASEESSAAARSYIKKNYDELKMLNPKTPFL
VRDGWPGKDPYIVATYDWGKEVSKTIGGLDEKGIDALLKGLVEEGKSLPK
FTHPPLNGTPDAIVDALPRDAFY*
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mRNA from alignment at scaffold_56:61761..62367-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10591 ID=mRNA_10591|Name=jgi.p|Nanoce1779_2|611444|organism=Nannochloropsis oceanica|type=mRNA|length=607bp|location=Sequence derived from alignment at scaffold_56:61761..62367- (Nannochloropsis oceanica)
ACAGACCTTAACCCGATAAAGAAACAATGGCCGCATGGCGTGCCTCCATT
TCAAAGCACGTGCGGGAGCTGCGCTTCCTTATCAGCGCCTCGGAGGAGAG
CAGTGCCGCGGCCCGCTCTTACATCAAGAAAAACTACGACGAACTCAAGA
TGCTCAACCCCAAGACCCCCTTCCTCGTGCGTGACGGGTGGCCAGGAAAG
GACCCATACATAGTAGCGACGTATGACTGGGGGAAGGAAGTGAGCAAGAC
CATTGGGGGCCTGGACGAGAAGGGAATTGATGCTCTGTTGAAAGGCTTGG
TGGAGGAAGGAAAGAGCCTGCCCAAATTTACCCACCCGCCGCTGAACGGC
ACGCCCGACGCAATTGTCGACGCGCTGCCACGGGACGCATTTTATTGAGC
GGTGAGAGCAGTTGAGCAATGGGAATTGATATGTGTGTGTACTTAGGATG
TCAATGGCCGCGAGAAAGGTGCTGACGCGGGGAGCTAGATAGTGAGATAG
CGTGTGATGTGAGGAGGCGGCGGGTAAATGGCACCTTCTGACTCGAAGGA
AGATAGAAACAAACCTTGAACACAAGAGAAGATCAGGCAAGCCAGATAAA
ATGCCAC
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Coding sequence (CDS) from alignment at scaffold_56:61761..62367-

>mRNA_10591 ID=mRNA_10591|Name=jgi.p|Nanoce1779_2|611444|organism=Nannochloropsis oceanica|type=CDS|length=372bp|location=Sequence derived from alignment at scaffold_56:61761..62367- (Nannochloropsis oceanica)
ATGGCCGCATGGCGTGCCTCCATTTCAAAGCACGTGCGGGAGCTGCGCTT
CCTTATCAGCGCCTCGGAGGAGAGCAGTGCCGCGGCCCGCTCTTACATCA
AGAAAAACTACGACGAACTCAAGATGCTCAACCCCAAGACCCCCTTCCTC
GTGCGTGACGGGTGGCCAGGAAAGGACCCATACATAGTAGCGACGTATGA
CTGGGGGAAGGAAGTGAGCAAGACCATTGGGGGCCTGGACGAGAAGGGAA
TTGATGCTCTGTTGAAAGGCTTGGTGGAGGAAGGAAAGAGCCTGCCCAAA
TTTACCCACCCGCCGCTGAACGGCACGCCCGACGCAATTGTCGACGCGCT
GCCACGGGACGCATTTTATTGA
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Synonyms
Publications