EWM20412.1, cds10260 (CDS) Nannochloropsis gaditana

Overview
NameEWM20412.1
Unique Namecds10260
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037270.1:13359..13829 -

Link to JBrowse

Properties
Property NameValue
Start range13359
Start range.
Protein idEWM20412.1
ProductZinc finger, RING/FYVE/PHD-type
Partialtrue
Orig transcript idgnl|cribi|Naga_101656g1.3585.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037270.1supercontigKK037270.1:13359..13829 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011011Znf_FYVE_PHD
IPR013083Znf_RING/FYVE/PHD
IPR019787Znf_PHD-finger
Homology
[Close]
BLAST of EWM20412.1 vs. NCBI_GenBank
Match: gi|585100000|gb|EWM20412.1| (Zinc finger, RING/FYVE/PHD-type, partial [Nannochloropsis gaditana])

HSP 1 Score: 301.597 bits (771), Expect = 2.129e-103
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0 
Query:    1 MLCQASTVLPLQLPATSSSSSLSSPSSSPTSSRLITVETIPSEPPLTASPSSSLPPSKTRAALCDPVPPPSPSSSVHCLCRGPDDGSLMVECGSCLRWFHLRCLSPAAFVPVTGRKEGRSEGRREGGMVEGLEGGGKGCAGKEEEEGGRRKGEEGRR 157
            MLCQASTVLPLQLPATSSSSSLSSPSSSPTSSRLITVETIPSEPPLTASPSSSLPPSKTRAALCDPVPPPSPSSSVHCLCRGPDDGSLMVECGSCLRWFHLRCLSPAAFVPVTGRKEGRSEGRREGGMVEGLEGGGKGCAGKEEEEGGRRKGEEGRR
Sbjct:    1 MLCQASTVLPLQLPATSSSSSLSSPSSSPTSSRLITVETIPSEPPLTASPSSSLPPSKTRAALCDPVPPPSPSSSVHCLCRGPDDGSLMVECGSCLRWFHLRCLSPAAFVPVTGRKEGRSEGRREGGMVEGLEGGGKGCAGKEEEEGGRRKGEEGRR 157
The following BLAST results are available for this feature:
BLAST of EWM20412.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585100000|gb|EWM20412.1|2.129e-103100.00Zinc finger, RING/FYVE/PHD-type, partial [Nannochl... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10291rna10291Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications