rna10291, rna10291 (mRNA) Nannochloropsis gaditana

Overview
Namerna10291
Unique Namerna10291
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1056
Alignment locationKK037270.1:13359..14393 -

Link to JBrowse

Properties
Property NameValue
ProductZinc finger, RING/FYVE/PHD-type
Orig transcript idgnl|cribi|Naga_101656g1.3585.mrna
Orig protein idgnl|cribi|Naga_101656g1.3585
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037270.1supercontigKK037270.1:13359..14393 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101656g1gene9992Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20412.1cds10260Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10291rna10291-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10291 ID=rna10291|Name=rna10291|organism=Nannochloropsis gaditana|type=mRNA|length=1056bp
ATGCAGCTTAGACAGGTAAAAATGCGATCACCTTTAGCATCCATCCTTCT
GGCCACAACAAGAAGGAAGCGCGCCCGTCCTCCCTCGAGGTATCGACATA
TTGCACGTATCAGCCCGATAAGTGTGTCTTGTAAGCCGCTGTTAAGAGTA
TCTATGCTTTCTCACGTATTTTCTATACGACACAGACATTTTGCCCGTCG
TCCGTCCCCACCCACTGGTCCGCCTCCTCCCCCTCGTCCGCCTCCTCGTC
GCACACAGCAGCTTCTTTCCCTCACCCCAACCATATACACGCTATCAGAC
ATCTTTGAGGATCGTCCTACAAGCGATGCAGAGGCTCCTGTCGCTGCTCC
CGATTCGGACTCAACCTCCTCCCTCCTTCCCTCCTCCTCCCTCCGTACCA
AGGCGAAAATCCTCTTCTCGGCGCCTGCTCTTTACCACTCACCGGCCTCG
CTGTCGTACGCTTTACCCCCTGTCACGTCTTCGAAGCACACCGAGGTGGC
CTGCCTTGGCCGATCCAACGTGGGCAAGTCCAGTTTGGTCGCCGCCCTCC
TGGGGGGGGGCGCCGGCCGAGGGAAAGGGCCCCTGGTGCGGACGAGTAAG
CGACCCGGATGTACGCAGACGCTCAACCTCTACAGCCTCCAGGGCCATCC
TTACTTCTACTTGGTCGATCTGCCTGGCTACGGCTTTGCGAGGGCGGGGG
GGAGGCAGCGCGAGGCATGGTTGGAGGTGACGCTCTCCTACCTTAATTCC
CGGGGCTTGGACGTGTTAAGGAGGACTTTGCTCCTCATCGATGCCCGGCA
TGGCGTAATGAAGCATGACGAGGCGGCCATGGACCTGCTGGACGAGCACG
CAGTGCCCTATCAGCTCGTTCTCACCAAAGTCGACGCCCTCAAACACGGG
AGCGAGAGGGAAGAGACGCTCGCGCAGGTCCTCCGTCTCTGCACGCAACA
GCGCCACCTCGCCTGTTGGCCCATAGTTCACGTCACCAGCAGCAGGACAG
GAGAAGGGGTGGAGGCCCTCCGGGAGTGCCTGGCGAGCCTCGTCTACCAG
GAGTGA
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protein sequence of rna10291

>rna10291-protein ID=rna10291-protein|Name=rna10291|organism=Nannochloropsis gaditana|type=polypeptide|length=157bp
MLCQASTVLPLQLPATSSSSSLSSPSSSPTSSRLITVETIPSEPPLTASP
SSSLPPSKTRAALCDPVPPPSPSSSVHCLCRGPDDGSLMVECGSCLRWFH
LRCLSPAAFVPVTGRKEGRSEGRREGGMVEGLEGGGKGCAGKEEEEGGRR
KGEEGRR
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mRNA from alignment at KK037270.1:13359..14393-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10291 ID=rna10291|Name=rna10291|organism=Nannochloropsis gaditana|type=mRNA|length=1035bp|location=Sequence derived from alignment at KK037270.1:13359..14393- (Nannochloropsis gaditana)
TCAGACATATATTTCGGACGCGATACCGTGTGACGATGTGGAAAATGTCG
GCGCGATCCTCGCAGGCTCTGGCTTCGACCGCATCGCCCTCTTCAACACC
CGCTTGGGGTATAATGAGACAAATGTTTACTGCATTTGAAAGGCCGGGCA
CAGAAAAAGCGTACCGCTATGGCAATGGATGTTGAATGAGCTCTGTCATG
AGTGAACGAAAACCTTTTTTGGAAGCGTAAAACGTGCAAGGGCTCTCCGA
GTCTGGTCACGTTCCTTTTGGATGCCAGTTCGGGCATGCTAATTGCAACC
ACAAGTATGTGAGGGCTCTCAAAGGTGCCCCAAAAGACTGCGAGAGAGGG
ATTTCACTCTTCTTACCGATAAAATGATATGATGTCTTGTTCATGGAGGG
AAAAAAGTCTTTGGTCCTGACCCAAACTCATTCCTGCTCGATATCGATTG
AAAACCTCCGCGCTCATTTGAATACACACTTACAAAGGTACCCCCACCAT
ATGCCCGCACAGGAAAGCCATTTCATTGGCGAATGAGGCTAGAGTGAGGA
ACTCATCCGCCAGTATGCTTTGTCAGGCCTCCACTGTGCTGCCCCTCCAG
CTCCCAGCTACCTCCTCCTCCTCCTCCCTTTCCTCCCCTTCCTCCTCCCC
GACGTCTTCCCGCCTCATCACTGTCGAAACCATTCCCTCCGAGCCCCCTC
TCACCGCCTCACCATCTTCAAGCCTCCCTCCGTCCAAAACGAGGGCGGCT
CTCTGTGACCCCGTACCCCCTCCCTCTCCCTCGTCCTCCGTGCACTGCCT
TTGCCGCGGGCCCGACGACGGCTCCCTGATGGTGGAATGTGGATCTTGCT
TAAGGTGGTTTCACCTTAGGTGCCTCTCCCCCGCCGCCTTTGTCCCCGTG
ACAGGGCGGAAGGAGGGAAGGAGCGAGGGAAGGAGGGAGGGAGGGATGGT
GGAGGGGTTGGAGGGTGGTGGGAAGGGATGTGCGGGAAAAGAGGAGGAGG
AGGGGGGGAGGAGGAAGGGGGAGGAAGGGAGGAGG
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Coding sequence (CDS) from alignment at KK037270.1:13359..14393-

>rna10291 ID=rna10291|Name=rna10291|organism=Nannochloropsis gaditana|type=CDS|length=471bp|location=Sequence derived from alignment at KK037270.1:13359..14393- (Nannochloropsis gaditana)
ATGCTTTGTCAGGCCTCCACTGTGCTGCCCCTCCAGCTCCCAGCTACCTC
CTCCTCCTCCTCCCTTTCCTCCCCTTCCTCCTCCCCGACGTCTTCCCGCC
TCATCACTGTCGAAACCATTCCCTCCGAGCCCCCTCTCACCGCCTCACCA
TCTTCAAGCCTCCCTCCGTCCAAAACGAGGGCGGCTCTCTGTGACCCCGT
ACCCCCTCCCTCTCCCTCGTCCTCCGTGCACTGCCTTTGCCGCGGGCCCG
ACGACGGCTCCCTGATGGTGGAATGTGGATCTTGCTTAAGGTGGTTTCAC
CTTAGGTGCCTCTCCCCCGCCGCCTTTGTCCCCGTGACAGGGCGGAAGGA
GGGAAGGAGCGAGGGAAGGAGGGAGGGAGGGATGGTGGAGGGGTTGGAGG
GTGGTGGGAAGGGATGTGCGGGAAAAGAGGAGGAGGAGGGGGGGAGGAGG
AAGGGGGAGGAAGGGAGGAGG
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Synonyms
Publications