EWM20421.1, cds10252 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM20421.1 vs. NCBI_GenBank
Match: gi|585100016|gb|EWM20421.1| (condensin complex component smc1, partial [Nannochloropsis gaditana]) HSP 1 Score: 231.876 bits (590), Expect = 5.113e-77 Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0
Query: 1 SPTGVGSYRINEKEVTGEAYESTLKSIGVLVKARNFLVFQGDVESIAQKAPKDLTALFEQISGSEDLKASYEEARRAKEEADENVIFAYQKKKSQAAERKQVPSLFPSFPPASSTS 116
SPTGVGSYRINEKEVTGEAYESTLKSIGVLVKARNFLVFQGDVESIAQKAPKDLTALFEQISGSEDLKASYEEARRAKEEADENVIFAYQKKKSQAAERKQVPSLFPSFPPASSTS
Sbjct: 1 SPTGVGSYRINEKEVTGEAYESTLKSIGVLVKARNFLVFQGDVESIAQKAPKDLTALFEQISGSEDLKASYEEARRAKEEADENVIFAYQKKKSQAAERKQVPSLFPSFPPASSTS 116
BLAST of EWM20421.1 vs. NCBI_GenBank
Match: gi|553189447|ref|XP_005855005.1| (structural maintenance of chromosome-like protein, partial [Nannochloropsis gaditana CCMP526] >gi|422294059|gb|EKU21359.1| structural maintenance of chromosome-like protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 169.859 bits (429), Expect = 2.771e-48 Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0
Query: 19 AYESTLKSIGVLVKARNFLVFQGDVESIAQKAPKDLTALFEQISGSEDLKASYEEARRAKEEADENVIFAYQKKKSQAAERKQV 102
AYESTLKSIGVLVKARNFLVFQGDVESIAQKAPKDLTALFEQISGSEDLKASYEEARRAKEEADENVIFAYQKKKSQAAERKQV
Sbjct: 1 AYESTLKSIGVLVKARNFLVFQGDVESIAQKAPKDLTALFEQISGSEDLKASYEEARRAKEEADENVIFAYQKKKSQAAERKQV 84
BLAST of EWM20421.1 vs. NCBI_GenBank
Match: gi|299473405|emb|CBN77803.1| (structural maintenance of chromosomes 1 protein [Ectocarpus siliculosus]) HSP 1 Score: 140.198 bits (352), Expect = 2.853e-36 Identity = 69/102 (67.65%), Postives = 85/102 (83.33%), Query Frame = 0
Query: 1 SPTGVGSYRINEKEVTGEAYESTLKSIGVLVKARNFLVFQGDVESIAQKAPKDLTALFEQISGSEDLKASYEEARRAKEEADENVIFAYQKKKSQAAERKQV 102
S G SYR+N+KEVT E+YE L+SIGVLVKARNFLVFQGDVESIA K+PK+LT LFEQISGS++ KA YEE + AKE+A+E+ IF++++KK AERKQV
Sbjct: 108 SAGGASSYRLNDKEVTWESYEKRLRSIGVLVKARNFLVFQGDVESIASKSPKELTQLFEQISGSDESKAEYEELKAAKEKAEEDTIFSFKRKKGCQAERKQV 209
BLAST of EWM20421.1 vs. NCBI_GenBank
Match: gi|695439758|ref|XP_009532791.1| (hypothetical protein PHYSODRAFT_517482 [Phytophthora sojae] >gi|348672638|gb|EGZ12458.1| hypothetical protein PHYSODRAFT_517482 [Phytophthora sojae]) HSP 1 Score: 127.102 bits (318), Expect = 2.654e-34 Identity = 62/109 (56.88%), Postives = 81/109 (74.31%), Query Frame = 0
Query: 1 SPTGVGSYRINEKEVTGEAYESTLKSIGVLVKARNFLVFQGDVESIAQKAPKDLTALFEQISGSEDLKASYEEARRAKEEADENVIFAYQKKKSQAAERKQVPSLFPSF 109
S GVG+YRI+ ++V+ E Y++ LK IG+LVKARNFLVFQGDVESIA K+P +LT LFEQIS S++LKA YE+ K A+EN IFAY++KK AE++ V + F
Sbjct: 102 SEKGVGTYRIDARDVSAETYQAQLKEIGILVKARNFLVFQGDVESIASKSPAELTKLFEQISMSDELKAEYEQLLEEKNAAEENTIFAYKRKKGLVAEKRLVGAGLGGF 210
BLAST of EWM20421.1 vs. NCBI_GenBank
Match: gi|1173957661|gb|OQS04148.1| (structural maintenance of chromosomes protein [Thraustotheca clavata]) HSP 1 Score: 133.265 bits (334), Expect = 7.685e-34 Identity = 66/102 (64.71%), Postives = 79/102 (77.45%), Query Frame = 0
Query: 1 SPTGVGSYRINEKEVTGEAYESTLKSIGVLVKARNFLVFQGDVESIAQKAPKDLTALFEQISGSEDLKASYEEARRAKEEADENVIFAYQKKKSQAAERKQV 102
S GVGSYRIN++++T E YE+TLK +G+LVKARNFLVFQGDVESIA K+P LT LFE IS S++LK YE+ AK A+EN IFAYQK+K AERK V
Sbjct: 113 SDKGVGSYRINQQDMTYEEYEATLKDLGILVKARNFLVFQGDVESIASKSPDQLTRLFEMISSSDELKDEYEKYLEAKNAAEENTIFAYQKRKGLTAERKIV 214
BLAST of EWM20421.1 vs. NCBI_GenBank
Match: gi|1173926571|gb|OQR80760.1| (structural maintenance of chromosomes protein [Achlya hypogyna]) HSP 1 Score: 133.265 bits (334), Expect = 8.792e-34 Identity = 66/102 (64.71%), Postives = 79/102 (77.45%), Query Frame = 0
Query: 1 SPTGVGSYRINEKEVTGEAYESTLKSIGVLVKARNFLVFQGDVESIAQKAPKDLTALFEQISGSEDLKASYEEARRAKEEADENVIFAYQKKKSQAAERKQV 102
S G+GSYRIN+++V E YE+TLK +G+LVKARNFLVFQGDVESIA K+P+ LT LFE IS S++LK YE+ K A+EN IFAYQKKK AAERK V
Sbjct: 113 SDKGIGSYRINDRDVPYEEYEATLKDLGILVKARNFLVFQGDVESIASKSPEQLTRLFEMISSSDELKDEYEKCLEDKNAAEENTIFAYQKKKGLAAERKIV 214
BLAST of EWM20421.1 vs. NCBI_GenBank
Match: gi|669155824|ref|XP_008613474.1| (hypothetical protein SDRG_09327 [Saprolegnia diclina VS20] >gi|530735109|gb|EQC33351.1| hypothetical protein SDRG_09327 [Saprolegnia diclina VS20]) HSP 1 Score: 131.339 bits (329), Expect = 3.918e-33 Identity = 66/102 (64.71%), Postives = 77/102 (75.49%), Query Frame = 0
Query: 1 SPTGVGSYRINEKEVTGEAYESTLKSIGVLVKARNFLVFQGDVESIAQKAPKDLTALFEQISGSEDLKASYEEARRAKEEADENVIFAYQKKKSQAAERKQV 102
S GVGSY IN +V + YE+TLK +G+LVKARNFLVFQGDVESIA K+P+ LT LFE IS S++LK YE+ AK A+EN IFAYQKKK AAERK V
Sbjct: 113 SDKGVGSYSINGNDVAHDEYENTLKDLGILVKARNFLVFQGDVESIASKSPEQLTRLFEMISSSDELKDEYEKCMEAKNAAEENTIFAYQKKKGLAAERKIV 214
BLAST of EWM20421.1 vs. NCBI_GenBank
Match: gi|673015086|ref|XP_008861504.1| (hypothetical protein H310_00477 [Aphanomyces invadans] >gi|574483102|gb|ETW10093.1| hypothetical protein H310_00477 [Aphanomyces invadans]) HSP 1 Score: 130.568 bits (327), Expect = 7.730e-33 Identity = 66/102 (64.71%), Postives = 78/102 (76.47%), Query Frame = 0
Query: 1 SPTGVGSYRINEKEVTGEAYESTLKSIGVLVKARNFLVFQGDVESIAQKAPKDLTALFEQISGSEDLKASYEEARRAKEEADENVIFAYQKKKSQAAERKQV 102
S G+GSYRIN E + E YESTLK +G+LVKARNFLVFQGDVESIA K+P+ LT +FE IS SE+LK YE+ + K A+EN IFAYQK+K AAERK V
Sbjct: 114 SEKGIGSYRINNHEKSYEEYESTLKDLGILVKARNFLVFQGDVESIASKSPEQLTRMFELISSSEELKEEYEKCLQEKAIAEENTIFAYQKRKGLAAERKIV 215
BLAST of EWM20421.1 vs. NCBI_GenBank
Match: gi|673015088|ref|XP_008861505.1| (hypothetical protein, variant [Aphanomyces invadans] >gi|574483103|gb|ETW10094.1| hypothetical protein, variant [Aphanomyces invadans]) HSP 1 Score: 130.183 bits (326), Expect = 9.048e-33 Identity = 66/102 (64.71%), Postives = 78/102 (76.47%), Query Frame = 0
Query: 1 SPTGVGSYRINEKEVTGEAYESTLKSIGVLVKARNFLVFQGDVESIAQKAPKDLTALFEQISGSEDLKASYEEARRAKEEADENVIFAYQKKKSQAAERKQV 102
S G+GSYRIN E + E YESTLK +G+LVKARNFLVFQGDVESIA K+P+ LT +FE IS SE+LK YE+ + K A+EN IFAYQK+K AAERK V
Sbjct: 114 SEKGIGSYRINNHEKSYEEYESTLKDLGILVKARNFLVFQGDVESIASKSPEQLTRMFELISSSEELKEEYEKCLQEKAIAEENTIFAYQKRKGLAAERKIV 215
BLAST of EWM20421.1 vs. NCBI_GenBank
Match: gi|813133689|ref|XP_012197904.1| (hypothetical protein SPRG_03921 [Saprolegnia parasitica CBS 223.65] >gi|641537452|gb|KDO31305.1| hypothetical protein SPRG_03921 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 127.872 bits (320), Expect = 6.037e-32 Identity = 64/102 (62.75%), Postives = 76/102 (74.51%), Query Frame = 0
Query: 1 SPTGVGSYRINEKEVTGEAYESTLKSIGVLVKARNFLVFQGDVESIAQKAPKDLTALFEQISGSEDLKASYEEARRAKEEADENVIFAYQKKKSQAAERKQV 102
S GVGSY +N +V + YE+ LK +G+LVKARNFLVFQGDVESIA K+P+ LT LFE IS S++LK YE+ AK A+EN IFAYQKKK AAERK V
Sbjct: 113 SDKGVGSYSVNGSDVAHDEYENILKDLGILVKARNFLVFQGDVESIASKSPEQLTRLFEMISSSDELKDEYEKCMEAKNAAEENTIFAYQKKKGLAAERKIV 214 The following BLAST results are available for this feature:
BLAST of EWM20421.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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