rna10283, rna10283 (mRNA) Nannochloropsis gaditana

Overview
Namerna10283
Unique Namerna10283
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1387
Alignment locationKK037269.1:26813..27524 +

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Properties
Property NameValue
Productcondensin complex component smc1
Orig transcript idgnl|cribi|Naga_102706g1.3326.mrna
Orig protein idgnl|cribi|Naga_102706g1.3326
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037269.1supercontigKK037269.1:26813..27524 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102706g1gene9984Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10283rna10283-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20421.1cds10252Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10283 ID=rna10283|Name=rna10283|organism=Nannochloropsis gaditana|type=mRNA|length=1387bp
TTTCTCAGCCAACATCAACAAAGAACCCCTGATAATTAGCTCTCGCATCT
TTCCTTTTTTTGGACTTCAATTTTGGTCCGTAATTTTCAAAATATACCTC
AGAGCGGAAGAATGGCTACAGCTGCTGCCGCCTCCTCAGGGACCCTTCCC
AACGTGCAGGGGGAGAAAGACGCGCCTCCAGGTCTCTTGCCCTGGGTAGA
AAAATATCGTCCAGTCACACTGAATGATGTGGTAGGCAACACGGAAGCCA
TCGACCGCCTGAAGGTGGTGGCTCAAGACGGGAACATGCCTCACATGCTG
CTTGCGGGCCCTCCGGGCACTGGGAAAACCTCCTCCATCGTGTGCCTGTC
CCGCGAGTTGCTGGGCGAGGAGCATTTGGGTGCGTCCTCTTTGCTCTCCC
TACCCTACTCTCGCCCTTGCAAGGTCTTCACGGCTGCCTTCCCCTTTTCT
TTCGTCCTCCCACTGCCCATTCCCACAGGAGCGGCGGTGCTGGAGCTGAA
CGCCTCGGACGAGCGAGGCATCGACGTGATCCGTTCCCGGATCAAGATGT
TCGCGCAAAAAAAGGTCGTCCTCCCTCCCGGTAGACATAAGGTAGTGATC
CTGGACGAGGCAGACTCCATGACAAGTGCCGCCCAGCAGGCGTTGCGGCG
CACTATGGAGATCTACTCGCATACGACCCGCTTTGCTCTCGCCTGCAACA
CCAGTAGCAAGATCATCGAGCCCATCCAGTCACGCTGCGCCATACTCCGC
TTCTCCCGCTTGGCCGACGAGGAAATCCTGGATCGCCTCCGCCAGATATG
TGAGGCCGAGCACGTCGGCTTCTCCGATGATGGACTTGAAGCAGTCATCT
TCACGGCGGAGGGTGACATGCGCAATGCCATAAACAACCTGCAGAGCACT
TATAGCGGCTTCGGCTACGTCAACCAGGCGAACGTCTTCAAAGTGTGCGA
TCAGCCCCACCCGCTCCTCATGAAGGAGGTCCTCGACCTCTGTGCGGGCT
CCGGAGACCTCAAGGCGGCGCAGGAGAAGCTGTTGCGGGTATGGAACCTG
GGCTACAGCGCATCGGACATTGTCGGGACGCTGTTTAAGGTCTGCCGGAA
TCACGGGACGATGAACGAGGGCACCAAACTTAATTTTATCCGGGAGATCG
GCATGGTCCACATGCGCATTGCGGAAGGTCTCAACTCACGCACACAAATA
CTGGGCTTACTGGCCAAGCTCTGCGCCCTACAGCACAAGCAGCAGCAGCA
GCATGAGAATGGAAAGGGGCAAAGCAATTGAGAAGAGGACGTGGGCCATG
AAACGACTGGGGGTCAGCGTATGGAAGGGCTAGGATGCCGGCGAAAGAAT
GCTCTCAACCAATGACAAAATACCCGACGCATTTGGG
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protein sequence of rna10283

>rna10283-protein ID=rna10283-protein|Name=rna10283|organism=Nannochloropsis gaditana|type=polypeptide|length=116bp
SPTGVGSYRINEKEVTGEAYESTLKSIGVLVKARNFLVFQGDVESIAQKA
PKDLTALFEQISGSEDLKASYEEARRAKEEADENVIFAYQKKKSQAAERK
QVPSLFPSFPPASSTS
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mRNA from alignment at KK037269.1:26813..27524+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10283 ID=rna10283|Name=rna10283|organism=Nannochloropsis gaditana|type=mRNA|length=712bp|location=Sequence derived from alignment at KK037269.1:26813..27524+ (Nannochloropsis gaditana)
CTCCCCCACCGGAGTGGGCTCCTACCGAATTAACGAGAAGGAGGTCACGG
GCGAGGTTCGtgtacctcccctcccccttccctcccccctcccctccccc
cctccctccccccctccctccattcctctcacccacgcccacgtcccccc
ttgtcctccctcaaGGCCTATGAGAGCACCCTCAAGTCGATCGGCGTGCT
CGTCAAAGCCCGGAatttccttgtcttccaagGGGACGTGGAGAGCATTG
CTCAAAAAGCGCCCAAGGACCTGACCGCCCTCTTCGAACAGGTGCGAACG
CCCCgcggctttctctcccctgcctGCGTTGccccgctcttcccccttcc
tgttcCCCGTCCCGTTTCCCCCATGTGCGGatcgccggcctccctctcgt
tccaGCAAgacctccgccgcctgctgTGTCTCAACCCCTgccgacccccc
cctccttccctcccaccctccctggtgCCCGCAGATCTCTGGCTCCGAGG
ACCTGAAGGCGTCCTACGAAGAGGCCCggcgggccaaggaggaggcggac
gagaacGTGATCTTCGCGTaccagaagaagaagagccaaGCCGCGGAGCG
CAAGCAGGtaccctccctttttccctccttccctcccgcctccagcacct
cctgaGAGCCGTCCAAACATTTTGTCTCAGTGGATATCTTGGACACTTTT
CTTTATTtctgt
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Coding sequence (CDS) from alignment at KK037269.1:26813..27524+

>rna10283 ID=rna10283|Name=rna10283|organism=Nannochloropsis gaditana|type=CDS|length=1053bp|location=Sequence derived from alignment at KK037269.1:26813..27524+ (Nannochloropsis gaditana)
TCCCCCACCGGAGTGGGCTCCTACCGAATTAACGAGAAGGAGGTCACGGG
CGAGGCCTATGAGAGCACCCTCAAGTCGATCGGCGTGCTCGTCAAAGCCC
GGAatttccttgtcttccaagGGGACGTGGAGAGCATTGCTCAAAAAGCG
CCCAAGGACCTGACCGCCCTCTTCGAACAGATCTCTGGCTCCGAGGACCT
GAAGGCGTCCTACGAAGAGGCCCggcgggccaaggaggaggcggacgaga
acGTGATCTTCGCGTaccagaagaagaagagccaaGCCGCGGAGCGCAAG
CAGGtaccctccctttttccctccttccctcccgcctccagcacctcctg
aTCCCCCACCGGAGTGGGCTCCTACCGAATTAACGAGAAGGAGGTCACGG
GCGAGGCCTATGAGAGCACCCTCAAGTCGATCGGCGTGCTCGTCAAAGCC
CGGAatttccttgtcttccaagGGGACGTGGAGAGCATTGCTCAAAAAGC
GCCCAAGGACCTGACCGCCCTCTTCGAACAGATCTCTGGCTCCGAGGACC
TGAAGGCGTCCTACGAAGAGGCCCggcgggccaaggaggaggcggacgag
aacGTGATCTTCGCGTaccagaagaagaagagccaaGCCGCGGAGCGCAA
GCAGGtaccctccctttttccctccttccctcccgcctccagcacctcct
gaTCCCCCACCGGAGTGGGCTCCTACCGAATTAACGAGAAGGAGGTCACG
GGCGAGGCCTATGAGAGCACCCTCAAGTCGATCGGCGTGCTCGTCAAAGC
CCGGAatttccttgtcttccaagGGGACGTGGAGAGCATTGCTCAAAAAG
CGCCCAAGGACCTGACCGCCCTCTTCGAACAGATCTCTGGCTCCGAGGAC
CTGAAGGCGTCCTACGAAGAGGCCCggcgggccaaggaggaggcggacga
gaacGTGATCTTCGCGTaccagaagaagaagagccaaGCCGCGGAGCGCA
AGCAGGtaccctccctttttccctccttccctcccgcctccagcacctcc
tga
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Synonyms
Publications