EWM20421.1, cds10252 (CDS) Nannochloropsis gaditana

Overview
NameEWM20421.1
Unique Namecds10252
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037269.1:26814..26867 +
Alignment locationKK037269.1:26978..27103 +
Alignment locationKK037269.1:27297..27467 +

Link to JBrowse

Properties
Property NameValue
Start range26814
Start range.
Protein idEWM20421.1
Productcondensin complex component smc1
Partialtrue
Orig transcript idgnl|cribi|Naga_102706g1.3326.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037269.1supercontigKK037269.1:26814..26867 +
KK037269.1supercontigKK037269.1:26978..27103 +
KK037269.1supercontigKK037269.1:27297..27467 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0007049cell cycle
GO:0016043cellular component organization
GO:0007064mitotic sister chromatid cohesion
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0000166nucleotide binding
GO:0003682chromatin binding
GO:0046982protein heterodimerization activity
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0008278cohesin complex
Vocabulary: INTERPRO
TermDefinition
IPR028468Smc1
IPR027417P-loop_NTPase
Homology
BLAST of EWM20421.1 vs. NCBI_GenBank
Match: gi|585100016|gb|EWM20421.1| (condensin complex component smc1, partial [Nannochloropsis gaditana])

HSP 1 Score: 231.876 bits (590), Expect = 5.113e-77
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0
Query:    1 SPTGVGSYRINEKEVTGEAYESTLKSIGVLVKARNFLVFQGDVESIAQKAPKDLTALFEQISGSEDLKASYEEARRAKEEADENVIFAYQKKKSQAAERKQVPSLFPSFPPASSTS 116
            SPTGVGSYRINEKEVTGEAYESTLKSIGVLVKARNFLVFQGDVESIAQKAPKDLTALFEQISGSEDLKASYEEARRAKEEADENVIFAYQKKKSQAAERKQVPSLFPSFPPASSTS
Sbjct:    1 SPTGVGSYRINEKEVTGEAYESTLKSIGVLVKARNFLVFQGDVESIAQKAPKDLTALFEQISGSEDLKASYEEARRAKEEADENVIFAYQKKKSQAAERKQVPSLFPSFPPASSTS 116          
BLAST of EWM20421.1 vs. NCBI_GenBank
Match: gi|553189447|ref|XP_005855005.1| (structural maintenance of chromosome-like protein, partial [Nannochloropsis gaditana CCMP526] >gi|422294059|gb|EKU21359.1| structural maintenance of chromosome-like protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 169.859 bits (429), Expect = 2.771e-48
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0
Query:   19 AYESTLKSIGVLVKARNFLVFQGDVESIAQKAPKDLTALFEQISGSEDLKASYEEARRAKEEADENVIFAYQKKKSQAAERKQV 102
            AYESTLKSIGVLVKARNFLVFQGDVESIAQKAPKDLTALFEQISGSEDLKASYEEARRAKEEADENVIFAYQKKKSQAAERKQV
Sbjct:    1 AYESTLKSIGVLVKARNFLVFQGDVESIAQKAPKDLTALFEQISGSEDLKASYEEARRAKEEADENVIFAYQKKKSQAAERKQV 84          
BLAST of EWM20421.1 vs. NCBI_GenBank
Match: gi|299473405|emb|CBN77803.1| (structural maintenance of chromosomes 1 protein [Ectocarpus siliculosus])

HSP 1 Score: 140.198 bits (352), Expect = 2.853e-36
Identity = 69/102 (67.65%), Postives = 85/102 (83.33%), Query Frame = 0
Query:    1 SPTGVGSYRINEKEVTGEAYESTLKSIGVLVKARNFLVFQGDVESIAQKAPKDLTALFEQISGSEDLKASYEEARRAKEEADENVIFAYQKKKSQAAERKQV 102
            S  G  SYR+N+KEVT E+YE  L+SIGVLVKARNFLVFQGDVESIA K+PK+LT LFEQISGS++ KA YEE + AKE+A+E+ IF++++KK   AERKQV
Sbjct:  108 SAGGASSYRLNDKEVTWESYEKRLRSIGVLVKARNFLVFQGDVESIASKSPKELTQLFEQISGSDESKAEYEELKAAKEKAEEDTIFSFKRKKGCQAERKQV 209          
BLAST of EWM20421.1 vs. NCBI_GenBank
Match: gi|695439758|ref|XP_009532791.1| (hypothetical protein PHYSODRAFT_517482 [Phytophthora sojae] >gi|348672638|gb|EGZ12458.1| hypothetical protein PHYSODRAFT_517482 [Phytophthora sojae])

HSP 1 Score: 127.102 bits (318), Expect = 2.654e-34
Identity = 62/109 (56.88%), Postives = 81/109 (74.31%), Query Frame = 0
Query:    1 SPTGVGSYRINEKEVTGEAYESTLKSIGVLVKARNFLVFQGDVESIAQKAPKDLTALFEQISGSEDLKASYEEARRAKEEADENVIFAYQKKKSQAAERKQVPSLFPSF 109
            S  GVG+YRI+ ++V+ E Y++ LK IG+LVKARNFLVFQGDVESIA K+P +LT LFEQIS S++LKA YE+    K  A+EN IFAY++KK   AE++ V +    F
Sbjct:  102 SEKGVGTYRIDARDVSAETYQAQLKEIGILVKARNFLVFQGDVESIASKSPAELTKLFEQISMSDELKAEYEQLLEEKNAAEENTIFAYKRKKGLVAEKRLVGAGLGGF 210          
BLAST of EWM20421.1 vs. NCBI_GenBank
Match: gi|1173957661|gb|OQS04148.1| (structural maintenance of chromosomes protein [Thraustotheca clavata])

HSP 1 Score: 133.265 bits (334), Expect = 7.685e-34
Identity = 66/102 (64.71%), Postives = 79/102 (77.45%), Query Frame = 0
Query:    1 SPTGVGSYRINEKEVTGEAYESTLKSIGVLVKARNFLVFQGDVESIAQKAPKDLTALFEQISGSEDLKASYEEARRAKEEADENVIFAYQKKKSQAAERKQV 102
            S  GVGSYRIN++++T E YE+TLK +G+LVKARNFLVFQGDVESIA K+P  LT LFE IS S++LK  YE+   AK  A+EN IFAYQK+K   AERK V
Sbjct:  113 SDKGVGSYRINQQDMTYEEYEATLKDLGILVKARNFLVFQGDVESIASKSPDQLTRLFEMISSSDELKDEYEKYLEAKNAAEENTIFAYQKRKGLTAERKIV 214          
BLAST of EWM20421.1 vs. NCBI_GenBank
Match: gi|1173926571|gb|OQR80760.1| (structural maintenance of chromosomes protein [Achlya hypogyna])

HSP 1 Score: 133.265 bits (334), Expect = 8.792e-34
Identity = 66/102 (64.71%), Postives = 79/102 (77.45%), Query Frame = 0
Query:    1 SPTGVGSYRINEKEVTGEAYESTLKSIGVLVKARNFLVFQGDVESIAQKAPKDLTALFEQISGSEDLKASYEEARRAKEEADENVIFAYQKKKSQAAERKQV 102
            S  G+GSYRIN+++V  E YE+TLK +G+LVKARNFLVFQGDVESIA K+P+ LT LFE IS S++LK  YE+    K  A+EN IFAYQKKK  AAERK V
Sbjct:  113 SDKGIGSYRINDRDVPYEEYEATLKDLGILVKARNFLVFQGDVESIASKSPEQLTRLFEMISSSDELKDEYEKCLEDKNAAEENTIFAYQKKKGLAAERKIV 214          
BLAST of EWM20421.1 vs. NCBI_GenBank
Match: gi|669155824|ref|XP_008613474.1| (hypothetical protein SDRG_09327 [Saprolegnia diclina VS20] >gi|530735109|gb|EQC33351.1| hypothetical protein SDRG_09327 [Saprolegnia diclina VS20])

HSP 1 Score: 131.339 bits (329), Expect = 3.918e-33
Identity = 66/102 (64.71%), Postives = 77/102 (75.49%), Query Frame = 0
Query:    1 SPTGVGSYRINEKEVTGEAYESTLKSIGVLVKARNFLVFQGDVESIAQKAPKDLTALFEQISGSEDLKASYEEARRAKEEADENVIFAYQKKKSQAAERKQV 102
            S  GVGSY IN  +V  + YE+TLK +G+LVKARNFLVFQGDVESIA K+P+ LT LFE IS S++LK  YE+   AK  A+EN IFAYQKKK  AAERK V
Sbjct:  113 SDKGVGSYSINGNDVAHDEYENTLKDLGILVKARNFLVFQGDVESIASKSPEQLTRLFEMISSSDELKDEYEKCMEAKNAAEENTIFAYQKKKGLAAERKIV 214          
BLAST of EWM20421.1 vs. NCBI_GenBank
Match: gi|673015086|ref|XP_008861504.1| (hypothetical protein H310_00477 [Aphanomyces invadans] >gi|574483102|gb|ETW10093.1| hypothetical protein H310_00477 [Aphanomyces invadans])

HSP 1 Score: 130.568 bits (327), Expect = 7.730e-33
Identity = 66/102 (64.71%), Postives = 78/102 (76.47%), Query Frame = 0
Query:    1 SPTGVGSYRINEKEVTGEAYESTLKSIGVLVKARNFLVFQGDVESIAQKAPKDLTALFEQISGSEDLKASYEEARRAKEEADENVIFAYQKKKSQAAERKQV 102
            S  G+GSYRIN  E + E YESTLK +G+LVKARNFLVFQGDVESIA K+P+ LT +FE IS SE+LK  YE+  + K  A+EN IFAYQK+K  AAERK V
Sbjct:  114 SEKGIGSYRINNHEKSYEEYESTLKDLGILVKARNFLVFQGDVESIASKSPEQLTRMFELISSSEELKEEYEKCLQEKAIAEENTIFAYQKRKGLAAERKIV 215          
BLAST of EWM20421.1 vs. NCBI_GenBank
Match: gi|673015088|ref|XP_008861505.1| (hypothetical protein, variant [Aphanomyces invadans] >gi|574483103|gb|ETW10094.1| hypothetical protein, variant [Aphanomyces invadans])

HSP 1 Score: 130.183 bits (326), Expect = 9.048e-33
Identity = 66/102 (64.71%), Postives = 78/102 (76.47%), Query Frame = 0
Query:    1 SPTGVGSYRINEKEVTGEAYESTLKSIGVLVKARNFLVFQGDVESIAQKAPKDLTALFEQISGSEDLKASYEEARRAKEEADENVIFAYQKKKSQAAERKQV 102
            S  G+GSYRIN  E + E YESTLK +G+LVKARNFLVFQGDVESIA K+P+ LT +FE IS SE+LK  YE+  + K  A+EN IFAYQK+K  AAERK V
Sbjct:  114 SEKGIGSYRINNHEKSYEEYESTLKDLGILVKARNFLVFQGDVESIASKSPEQLTRMFELISSSEELKEEYEKCLQEKAIAEENTIFAYQKRKGLAAERKIV 215          
BLAST of EWM20421.1 vs. NCBI_GenBank
Match: gi|813133689|ref|XP_012197904.1| (hypothetical protein SPRG_03921 [Saprolegnia parasitica CBS 223.65] >gi|641537452|gb|KDO31305.1| hypothetical protein SPRG_03921 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 127.872 bits (320), Expect = 6.037e-32
Identity = 64/102 (62.75%), Postives = 76/102 (74.51%), Query Frame = 0
Query:    1 SPTGVGSYRINEKEVTGEAYESTLKSIGVLVKARNFLVFQGDVESIAQKAPKDLTALFEQISGSEDLKASYEEARRAKEEADENVIFAYQKKKSQAAERKQV 102
            S  GVGSY +N  +V  + YE+ LK +G+LVKARNFLVFQGDVESIA K+P+ LT LFE IS S++LK  YE+   AK  A+EN IFAYQKKK  AAERK V
Sbjct:  113 SDKGVGSYSVNGSDVAHDEYENILKDLGILVKARNFLVFQGDVESIASKSPEQLTRLFEMISSSDELKDEYEKCMEAKNAAEENTIFAYQKKKGLAAERKIV 214          
The following BLAST results are available for this feature:
BLAST of EWM20421.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100016|gb|EWM20421.1|5.113e-77100.00condensin complex component smc1, partial [Nannoch... [more]
gi|553189447|ref|XP_005855005.1|2.771e-48100.00structural maintenance of chromosome-like protein,... [more]
gi|299473405|emb|CBN77803.1|2.853e-3667.65structural maintenance of chromosomes 1 protein [E... [more]
gi|695439758|ref|XP_009532791.1|2.654e-3456.88hypothetical protein PHYSODRAFT_517482 [Phytophtho... [more]
gi|1173957661|gb|OQS04148.1|7.685e-3464.71structural maintenance of chromosomes protein [Thr... [more]
gi|1173926571|gb|OQR80760.1|8.792e-3464.71structural maintenance of chromosomes protein [Ach... [more]
gi|669155824|ref|XP_008613474.1|3.918e-3364.71hypothetical protein SDRG_09327 [Saprolegnia dicli... [more]
gi|673015086|ref|XP_008861504.1|7.730e-3364.71hypothetical protein H310_00477 [Aphanomyces invad... [more]
gi|673015088|ref|XP_008861505.1|9.048e-3364.71hypothetical protein, variant [Aphanomyces invadan... [more]
gi|813133689|ref|XP_012197904.1|6.037e-3262.75hypothetical protein SPRG_03921 [Saprolegnia paras... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10283rna10283Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications