EWM20426.1, cds10246 (CDS) Nannochloropsis gaditana

Overview
NameEWM20426.1
Unique Namecds10246
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037269.1:10036..10191 +
Alignment locationKK037269.1:10339..10776 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20426.1
ProductCholine transporter
Orig transcript idgnl|cribi|Naga_100842g2.2209.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037269.1supercontigKK037269.1:10036..10191 +
KK037269.1supercontigKK037269.1:10339..10776 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR007603Choline_transptr-like
Homology
[Close]
BLAST of EWM20426.1 vs. NCBI_GenBank
Match: gi|585100023|gb|EWM20426.1| (Choline transporter [Nannochloropsis gaditana])

HSP 1 Score: 396.741 bits (1018), Expect = 1.169e-139
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0 
Query:    1 MVENARQERDNALKCLLDCLISCLDSLAQYLNRWAYTYIGIYGHSFVEAGHKVYNLFVRRGLTALLNDNLVGRVLFLGALMVGLVTCGLGVLLAFILQHSYLKDVENAPSLLGGAGFVVRPLVSLLPLPSLWRASLYPSYRRRYHVPSVHLACSPCLVLATPTILTCHPLSTSAILAIAPAPPSPSPFFSSCRWGFL 197
            MVENARQERDNALKCLLDCLISCLDSLAQYLNRWAYTYIGIYGHSFVEAGHKVYNLFVRRGLTALLNDNLVGRVLFLGALMVGLVTCGLGVLLAFILQHSYLKDVENAPSLLGGAGFVVRPLVSLLPLPSLWRASLYPSYRRRYHVPSVHLACSPCLVLATPTILTCHPLSTSAILAIAPAPPSPSPFFSSCRWGFL
Sbjct:    1 MVENARQERDNALKCLLDCLISCLDSLAQYLNRWAYTYIGIYGHSFVEAGHKVYNLFVRRGLTALLNDNLVGRVLFLGALMVGLVTCGLGVLLAFILQHSYLKDVENAPSLLGGAGFVVRPLVSLLPLPSLWRASLYPSYRRRYHVPSVHLACSPCLVLATPTILTCHPLSTSAILAIAPAPPSPSPFFSSCRWGFL 197
[Close]
BLAST of EWM20426.1 vs. NCBI_GenBank
Match: gi|585100024|gb|EWM20427.1| (Choline transporter [Nannochloropsis gaditana])

HSP 1 Score: 244.202 bits (622), Expect = 8.560e-80
Identity = 120/124 (96.77%), Postives = 121/124 (97.58%), Query Frame = 0 
Query:    1 MVENARQERDNALKCLLDCLISCLDSLAQYLNRWAYTYIGIYGHSFVEAGHKVYNLFVRRGLTALLNDNLVGRVLFLGALMVGLVTCGLGVLLAFILQHSYLKDVENAPSLLGGAGFVVRPLVS 124
            MVENARQERDNALKCLLDCLISCLDSLAQYLNRWAYTYIGIYGHSFVEAGHKVYNLFVRRGLTALLNDNLVGRVLFLGALMVGLVTCGLGVLLAFILQHSYLKDVENAPSLLGGAGFVV   V+
Sbjct:    1 MVENARQERDNALKCLLDCLISCLDSLAQYLNRWAYTYIGIYGHSFVEAGHKVYNLFVRRGLTALLNDNLVGRVLFLGALMVGLVTCGLGVLLAFILQHSYLKDVENAPSLLGGAGFVVGFFVT 124
[Close]
BLAST of EWM20426.1 vs. NCBI_GenBank
Match: gi|567954505|gb|ETK80138.1| (hypothetical protein L915_14113 [Phytophthora parasitica] >gi|568042702|gb|ETM40023.1| hypothetical protein L914_13920 [Phytophthora parasitica])

HSP 1 Score: 112.849 bits (281), Expect = 5.544e-27
Identity = 55/129 (42.64%), Postives = 82/129 (63.57%), Query Frame = 0 
Query:    1 MVENARQERDNALKCLLDCLISCLDSLAQYLNRWAYTYIGIYGHSFVEAGHKVYNLFVRRGLTALLNDNLVGRVLFLGALMVGLVTCGLGVLLAFILQHSYLKDVENAPSLLGGAGFVVRPLVSLLPLP 129
            + EN+RQ+  +AL C  +C++ CL SL +Y NRWAY Y+GIYG+ F +AG  V+ LF +RG  A++ND+L+G VL   AL VGL+  G+G L+A   + +     +N+ + L   G VV   V++ PL 
Sbjct:  110 LAENSRQD-GSALACFAECILGCLQSLMEYFNRWAYVYVGIYGYKFTQAGKAVFELFKQRGFDAIINDDLIGNVLGFAALGVGLICAGVGALIA---ETTDAVSFQNSTATLAILGLVVGIGVAVTPLA 234
[Close]
BLAST of EWM20426.1 vs. NCBI_GenBank
Match: gi|375267598|emb|CCD28249.1| (choline transporter-like, partial [Plasmopara viticola])

HSP 1 Score: 110.923 bits (276), Expect = 1.173e-26
Identity = 55/128 (42.97%), Postives = 79/128 (61.72%), Query Frame = 0 
Query:    1 MVENARQERDNALKCLLDCLISCLDSLAQYLNRWAYTYIGIYGHSFVEAGHKVYNLFVRRGLTALLNDNLVGRVLFLGALMVGLVTCGLGVLLAFILQHSYLKDVENAPSLLGGAGFVVRPLVSLLPL 128
            + EN+RQE  +AL C  +C++ CL SL +Y NRWAY Y+GIYG+ F +AG  V+ LF +RG  A++ND+L+G VL   AL VGL+  G+G ++A            N+ + L   G VV   V++ PL
Sbjct:   66 LAENSRQE-GSALACFAECILGCLQSLMEYFNRWAYVYVGIYGYKFTQAGKAVFELFKQRGFDAIINDDLIGNVLGFAALGVGLICAGVGAIIAETFD---ALSFHNSTAFLAILGLVVGIGVAVTPL 189
[Close]
BLAST of EWM20426.1 vs. NCBI_GenBank
Match: gi|695373907|ref|XP_009515161.1| (hypothetical protein PHYSODRAFT_474776 [Phytophthora sojae] >gi|348688072|gb|EGZ27886.1| hypothetical protein PHYSODRAFT_474776 [Phytophthora sojae])

HSP 1 Score: 113.235 bits (282), Expect = 3.830e-26
Identity = 54/129 (41.86%), Postives = 82/129 (63.57%), Query Frame = 0 
Query:    1 MVENARQERDNALKCLLDCLISCLDSLAQYLNRWAYTYIGIYGHSFVEAGHKVYNLFVRRGLTALLNDNLVGRVLFLGALMVGLVTCGLGVLLAFILQHSYLKDVENAPSLLGGAGFVVRPLVSLLPLP 129
            + E+ RQ+  +AL C  +C++ CL SL +Y NRWAY Y+GIYG+ F +AG  V+ LF +RG  A++ND+L+G VL   AL VGL+  G+G L+A   + +     +N+ + L   GFV+   V++ PL 
Sbjct:  255 LAESGRQD-GSALACFAECILGCLQSLMEYFNRWAYVYVGIYGYKFTQAGKAVFQLFKQRGFDAIINDDLIGNVLGFAALGVGLICAGVGALIA---ETTDAVTFQNSTAFLAILGFVIGIGVAVTPLA 379
[Close]
BLAST of EWM20426.1 vs. NCBI_GenBank
Match: gi|566017111|gb|ETI40022.1| (hypothetical protein, variant 1 [Phytophthora parasitica P1569] >gi|566017112|gb|ETI40023.1| hypothetical protein, variant 2 [Phytophthora parasitica P1569] >gi|567983164|gb|ETL33563.1| hypothetical protein, variant 1 [Phytophthora parasitica] >gi|567983165|gb|ETL33564.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|568012669|gb|ETL86846.1| hypothetical protein, variant 1 [Phytophthora parasitica] >gi|568012670|gb|ETL86847.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|570320780|gb|ETO68728.1| hypothetical protein, variant 1 [Phytophthora parasitica P1976] >gi|570320781|gb|ETO68729.1| hypothetical protein, variant 2 [Phytophthora parasitica P1976] >gi|570944634|gb|ETP09891.1| hypothetical protein, variant 1 [Phytophthora parasitica CJ01A1] >gi|570944635|gb|ETP09892.1| hypothetical protein, variant 2 [Phytophthora parasitica CJ01A1] >gi|570976085|gb|ETP37958.1| hypothetical protein, variant 1 [Phytophthora parasitica P10297] >gi|570976086|gb|ETP37959.1| hypothetical protein, variant 2 [Phytophthora parasitica P10297])

HSP 1 Score: 112.849 bits (281), Expect = 5.531e-26
Identity = 55/129 (42.64%), Postives = 82/129 (63.57%), Query Frame = 0 
Query:    1 MVENARQERDNALKCLLDCLISCLDSLAQYLNRWAYTYIGIYGHSFVEAGHKVYNLFVRRGLTALLNDNLVGRVLFLGALMVGLVTCGLGVLLAFILQHSYLKDVENAPSLLGGAGFVVRPLVSLLPLP 129
            + EN+RQ+  +AL C  +C++ CL SL +Y NRWAY Y+GIYG+ F +AG  V+ LF +RG  A++ND+L+G VL   AL VGL+  G+G L+A   + +     +N+ + L   G VV   V++ PL 
Sbjct:  255 LAENSRQD-GSALACFAECILGCLQSLMEYFNRWAYVYVGIYGYKFTQAGKAVFELFKQRGFDAIINDDLIGNVLGFAALGVGLICAGVGALIA---ETTDAVSFQNSTATLAILGLVVGIGVAVTPLA 379
[Close]
BLAST of EWM20426.1 vs. NCBI_GenBank
Match: gi|566017110|gb|ETI40021.1| (hypothetical protein F443_14464 [Phytophthora parasitica P1569] >gi|567983163|gb|ETL33562.1| hypothetical protein L916_14007 [Phytophthora parasitica] >gi|568012668|gb|ETL86845.1| hypothetical protein L917_13797 [Phytophthora parasitica] >gi|570320779|gb|ETO68727.1| hypothetical protein F444_14462 [Phytophthora parasitica P1976] >gi|570944633|gb|ETP09890.1| hypothetical protein F441_14342 [Phytophthora parasitica CJ01A1] >gi|570976084|gb|ETP37957.1| hypothetical protein F442_14306 [Phytophthora parasitica P10297])

HSP 1 Score: 112.849 bits (281), Expect = 1.053e-25
Identity = 55/128 (42.97%), Postives = 82/128 (64.06%), Query Frame = 0 
Query:    1 MVENARQERDNALKCLLDCLISCLDSLAQYLNRWAYTYIGIYGHSFVEAGHKVYNLFVRRGLTALLNDNLVGRVLFLGALMVGLVTCGLGVLLAFILQHSYLKDVENAPSLLGGAGFVVRPLVSLLPL 128
            + EN+RQ+  +AL C  +C++ CL SL +Y NRWAY Y+GIYG+ F +AG  V+ LF +RG  A++ND+L+G VL   AL VGL+  G+G L+A   + +     +N+ + L   G VV   V++ PL
Sbjct:  309 LAENSRQD-GSALACFAECILGCLQSLMEYFNRWAYVYVGIYGYKFTQAGKAVFELFKQRGFDAIINDDLIGNVLGFAALGVGLICAGVGALIA---ETTDAVSFQNSTATLAILGLVVGIGVAVTPL 432
[Close]
BLAST of EWM20426.1 vs. NCBI_GenBank
Match: gi|675202463|ref|XP_008910116.1| (hypothetical protein, variant 1 [Phytophthora parasitica INRA-310] >gi|675202465|ref|XP_008910117.1| hypothetical protein, variant 2 [Phytophthora parasitica INRA-310] >gi|568089882|gb|ETN04722.1| hypothetical protein, variant 1 [Phytophthora parasitica INRA-310] >gi|568089883|gb|ETN04723.1| hypothetical protein, variant 2 [Phytophthora parasitica INRA-310])

HSP 1 Score: 112.079 bits (279), Expect = 1.164e-25
Identity = 55/129 (42.64%), Postives = 81/129 (62.79%), Query Frame = 0 
Query:    1 MVENARQERDNALKCLLDCLISCLDSLAQYLNRWAYTYIGIYGHSFVEAGHKVYNLFVRRGLTALLNDNLVGRVLFLGALMVGLVTCGLGVLLAFILQHSYLKDVENAPSLLGGAGFVVRPLVSLLPLP 129
            + EN+RQ+  +AL C  +C++ CL SL +Y NRWAY Y+GIYG+ F +AG  V+ LF +RG  A++ND+L+G VL   AL VGL+  G G L+A   + +     +N+ + L   G VV   V++ PL 
Sbjct:  255 LAENSRQD-GSALACFAECILGCLQSLMEYFNRWAYVYVGIYGYKFTQAGKAVFELFKQRGFDAIINDDLIGNVLGFAALGVGLICAGAGALIA---ETTDAVSFQNSTATLAILGLVVGIGVAVTPLA 379
[Close]
BLAST of EWM20426.1 vs. NCBI_GenBank
Match: gi|301116938|ref|XP_002906197.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262107546|gb|EEY65598.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 111.309 bits (277), Expect = 1.957e-25
Identity = 54/129 (41.86%), Postives = 82/129 (63.57%), Query Frame = 0 
Query:    1 MVENARQERDNALKCLLDCLISCLDSLAQYLNRWAYTYIGIYGHSFVEAGHKVYNLFVRRGLTALLNDNLVGRVLFLGALMVGLVTCGLGVLLAFILQHSYLKDVENAPSLLGGAGFVVRPLVSLLPLP 129
            + E+ RQ+  +AL C  +C++ CL SL +Y NRWAY Y+GIYG+ F +AG  V+ LF +RG  A++ND+L+G VL   AL VGL+  G+G L+A   + + +   +N+ + L   G VV   V++ PL 
Sbjct:  263 LAESGRQD-GSALACFAECILGCLQSLMEYFNRWAYVYVGIYGYKFTQAGKAVFELFKQRGFDAIINDDLIGNVLGFAALGVGLICAGVGALIA---ETTDVVSFQNSTATLAILGLVVGIGVAVTPLA 387
[Close]
BLAST of EWM20426.1 vs. NCBI_GenBank
Match: gi|675202461|ref|XP_008910115.1| (hypothetical protein PPTG_14520 [Phytophthora parasitica INRA-310] >gi|568089881|gb|ETN04721.1| hypothetical protein PPTG_14520 [Phytophthora parasitica INRA-310])

HSP 1 Score: 111.694 bits (278), Expect = 2.283e-25
Identity = 55/128 (42.97%), Postives = 81/128 (63.28%), Query Frame = 0 
Query:    1 MVENARQERDNALKCLLDCLISCLDSLAQYLNRWAYTYIGIYGHSFVEAGHKVYNLFVRRGLTALLNDNLVGRVLFLGALMVGLVTCGLGVLLAFILQHSYLKDVENAPSLLGGAGFVVRPLVSLLPL 128
            + EN+RQ+  +AL C  +C++ CL SL +Y NRWAY Y+GIYG+ F +AG  V+ LF +RG  A++ND+L+G VL   AL VGL+  G G L+A   + +     +N+ + L   G VV   V++ PL
Sbjct:  309 LAENSRQD-GSALACFAECILGCLQSLMEYFNRWAYVYVGIYGYKFTQAGKAVFELFKQRGFDAIINDDLIGNVLGFAALGVGLICAGAGALIA---ETTDAVSFQNSTATLAILGLVVGIGVAVTPL 432
The following BLAST results are available for this feature:
BLAST of EWM20426.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100023|gb|EWM20426.1|1.169e-139100.00Choline transporter [Nannochloropsis gaditana][more]
gi|585100024|gb|EWM20427.1|8.560e-8096.77Choline transporter [Nannochloropsis gaditana][more]
gi|567954505|gb|ETK80138.1|5.544e-2742.64hypothetical protein L915_14113 [Phytophthora para... [more]
gi|375267598|emb|CCD28249.1|1.173e-2642.97choline transporter-like, partial [Plasmopara viti... [more]
gi|695373907|ref|XP_009515161.1|3.830e-2641.86hypothetical protein PHYSODRAFT_474776 [Phytophtho... [more]
gi|566017111|gb|ETI40022.1|5.531e-2642.64hypothetical protein, variant 1 [Phytophthora para... [more]
gi|566017110|gb|ETI40021.1|1.053e-2542.97hypothetical protein F443_14464 [Phytophthora para... [more]
gi|675202463|ref|XP_008910116.1|1.164e-2542.64hypothetical protein, variant 1 [Phytophthora para... [more]
gi|301116938|ref|XP_002906197.1|1.957e-2541.86conserved hypothetical protein [Phytophthora infes... [more]
gi|675202461|ref|XP_008910115.1|2.283e-2542.97hypothetical protein PPTG_14520 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10277rna10277Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications