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Properties
| Property Name | Value |
|---|
| Product | Choline transporter |
| Orig transcript id | gnl|cribi|Naga_100842g2.2209.mrna |
| Orig protein id | gnl|cribi|Naga_100842g2.2209 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037269.1 | supercontig | KK037269.1:9300..11507 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna10277 ID=rna10277|Name=rna10277|organism=Nannochloropsis gaditana|type=mRNA|length=330bp
CCCTTCCTCCCTCCCTCCAGGCCATCGCCTTCTGCTACATGCGGGCGGTC
AAGCGCTTCATTCCTTTCGCGGCTGCCAACCTCCGCGCCGCCACCTGTGC
CGTCAACGACTTCTTCCCGGTCATGTACGCAGCCTATGCCCTCCTCCTCC
TCGCCTTCCTCTGGTCGGTCGTCTGGAGCGTGGGCATGTACGGCGTCATC
GCCTACTTCCAGAGGGCAGACGAGGACCCGGGGCAGGGAGGGTCGGAAGG
CGGGGGGAGGGGAGCGTGGCGGGAGTCTACTACTTCCTCCTCTTGGTCAG
CTTCTTCTGGACCTTGCAGGTGCGGCCTAA back to topprotein sequence of rna10277 >rna10277-protein ID=rna10277-protein|Name=rna10277|organism=Nannochloropsis gaditana|type=polypeptide|length=197bp
MVENARQERDNALKCLLDCLISCLDSLAQYLNRWAYTYIGIYGHSFVEAG
HKVYNLFVRRGLTALLNDNLVGRVLFLGALMVGLVTCGLGVLLAFILQHS
YLKDVENAPSLLGGAGFVVRPLVSLLPLPSLWRASLYPSYRRRYHVPSVH
LACSPCLVLATPTILTCHPLSTSAILAIAPAPPSPSPFFSSCRWGFL back to topmRNA from alignment at KK037269.1:9300..11507+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna10277 ID=rna10277|Name=rna10277|organism=Nannochloropsis gaditana|type=mRNA|length=2208bp|location=Sequence derived from alignment at KK037269.1:9300..11507+ (Nannochloropsis gaditana)
aggtGGTGGGCGGCGTCCTCAACTGCACGGTGGCCGGGGTCGTGGGCTCC
TGGTGGTTCATTCCCAAGGCCGATCAGGCCAACGTCGTCACGGTACCgac
cctccgtccctccctccgtcccgctctctgtccctccttcccttcctttc
tccttgttcATCCCCCTGCTTGGTCTCCGAccccatccttcttccctccc
tctttccctccttcccttcctttctccttgttcATCCCCCTGCTTGGTCT
CCGAccccatccttcttcccaccctctttccctccttcccttcctttctc
atttttACTTCCACTCGGTCTCCGACctcatcccctttccctcccggccc
ataAAGGGTTCTTTCACGCGCGCCGCAACCACCTCCCTGGGCTCGATCTG
CTTTGGAGCGCTGGTTGTGGCAGTTCTTGAGGCGATGAAGGTAAGCCCTt
acccttcctttctttctccctccctcccttcctcccttcctccatccatc
cccccctccctcctgtgcgttgtcctctccctgccgcACCCCTCTCTTGG
GACGAGGGCATGGGTACCGCGCAGACGTTTCGGAGCAGGCGAGGCGTGCG
TAGACAGAGAGCGTGGTATTCACTTGGAAAGGCGTAGAACCTCGTGTGTT
CACGACGCAGGtcttctcatcctctccctccctcactcccttcccccttt
ctcccctccccacgcccgccgtccccccctcaGGCTATGGTCGAGAACGC
GCGACAAGAGAGAGATAATGCTCTCAAGTGCCTTCTCGACTGCCTCATCT
CCTGCCTGGATTCGCTCGCCCAATACCTGAACCGGTGGGCTTACACCTAC
ATCGGGATATATGGCCACTCCTTCGTGGAAGCCGGGCACAAGGTAccggg
agggcaggggggagggcggggagggggtgatAGAAAGCAGGCAGGGCGGA
AGGCCTGGACCTCCGTTCTTCCTCGTGTGTCGCTCGCCTGctccattccc
ctccctccctccctccctccctccctcctttctcactAGGTATACAACCT
CTTCGTCCGGCGGGGACTCACGGCCCTTCTCAACGACAACTTGGTCGGCC
GTGTCCTCTTCTTAGGAGCCTTGATGGTGGGGCTCGTGACCTGCGGGTTG
GgggtcctccttgcctttaTCCTGCAGCATTCCTACCTGAAAGACGTCGA
GAacgccccttccttgctgGGAGGAGCGGGTTTTGTGGTACGTCCCCTGG
TCTCTCTGTTGCCTCTCCCAAGTCTTTGGCGTGCATCATTGTATCCGAGT
TATCGTCGTCGCTACCATGTACCGTCAGTCCACCTCGCCTGTTCCCCATG
TCTGGTTCTTGCAACCCCCACCATCCTGACTTGCCATCCTCTCTCCACGA
GCGCAATCTTGgccatcgcccccgccccaccctccccctctcccttcttt
tcatCCTGCAGGTGGGGTTTTTTGTGACGGACGTGATGATGAACGTGGTT
TCCGCTGCTGTGGCGGCCGTCCTGGTCTGCTTCTTGGAGGACTCCCAGGC
CCTGGCTATCACCCACCCGGACTACCATTCTTACCTGGTGGCGGCGTGGG
CCATGCGCTTCCCCGACATCAATTGGTAGTCTTCCTTAGAGCTCCCTTTC
GttgccctttcttcttggacGTAGGAAACGACGCGCATTCTCCTGCCTCT
TTGAGTTTCCCTTGAGTAGGCGAGGATGCTCTTTGAacggccaggggggg
gaggagctgtcCCTCAAGAATGGGGGGTTGGACGGGGAGTTGCAGGGAGC
CATGCTATGTATATATACTCTCTCTAGCAAGTGGGTGAGGGGCCGACCAC
GGGCAGGGTGCTTGGGCGGACGAGAATGAATACATGGGAGAGACGcggga
ggatgaggtggCTGGAAGGGGGGTATGACTGTGGGTATTCTCGCTATTCG
CCCTATTTCCGTGCGACCTcagtccttccctcctgtcccctgcctttcct
aTGATGGCTCCACCCTCTCAGACATGTGAAAAAgaatggaaaaagaaaat
aaaaagCAACGCCGTCTGCAGGTTTTCGCCTCAGTATGCATCGAGTCGTT
AATTTGCTGTCGATCGGGGCCACCAATGCGAGACCGTCCGGACTAAATGC
ATGCGCGGCCTCCGGGCCCTCTTCCTGTGTCCTCTTTCACCTAGGCGTGG
TGCTTTAT back to topCoding sequence (CDS) from alignment at KK037269.1:9300..11507+ >rna10277 ID=rna10277|Name=rna10277|organism=Nannochloropsis gaditana|type=CDS|length=1188bp|location=Sequence derived from alignment at KK037269.1:9300..11507+ (Nannochloropsis gaditana)
ATGGTCGAGAACGCGCGACAAGAGAGAGATAATGCTCTCAAGTGCCTTCT
CGACTGCCTCATCTCCTGCCTGGATTCGCTCGCCCAATACCTGAACCGGT
GGGCTTACACCTACATCGGGATATATGGCCACTCCTTCGTGGAAGCCGGG
CACAAGGTATACAACCTCTTCGTCCGGCGGGGACTCACGGCCCTTCTCAA
CGACAACTTGGTCGGCCGTGTCCTCTTCTTAGGAGCCTTGATGGTGGGGC
TCGTGACCTGCGGGTTGGgggtcctccttgcctttaTCCTGCAGCATTCC
TACCTGAAAGACGTCGAGAacgccccttccttgctgGGAGGAGCGGGTTT
TGTGGTACGTCCCCTGGTCTCTCTGTTGCCTCTCCCAAGTCTTTGGCGTG
CATCATTGTATCCGAGTTATCGTCGTCGCTACCATGTACCGTCAGTCCAC
CTCGCCTGTTCCCCATGTCTGGTTCTTGCAACCCCCACCATCCTGACTTG
CCATCCTCTCTCCACGAGCGCAATCTTGgccatcgcccccgccccaccct
ccccctctcccttcttttcatCCTGCAGGTGGGGTTTTTTGTGAATGGTC
GAGAACGCGCGACAAGAGAGAGATAATGCTCTCAAGTGCCTTCTCGACTG
CCTCATCTCCTGCCTGGATTCGCTCGCCCAATACCTGAACCGGTGGGCTT
ACACCTACATCGGGATATATGGCCACTCCTTCGTGGAAGCCGGGCACAAG
GTATACAACCTCTTCGTCCGGCGGGGACTCACGGCCCTTCTCAACGACAA
CTTGGTCGGCCGTGTCCTCTTCTTAGGAGCCTTGATGGTGGGGCTCGTGA
CCTGCGGGTTGGgggtcctccttgcctttaTCCTGCAGCATTCCTACCTG
AAAGACGTCGAGAacgccccttccttgctgGGAGGAGCGGGTTTTGTGGT
ACGTCCCCTGGTCTCTCTGTTGCCTCTCCCAAGTCTTTGGCGTGCATCAT
TGTATCCGAGTTATCGTCGTCGCTACCATGTACCGTCAGTCCACCTCGCC
TGTTCCCCATGTCTGGTTCTTGCAACCCCCACCATCCTGACTTGCCATCC
TCTCTCCACGAGCGCAATCTTGgccatcgcccccgccccaccctccccct
ctcccttcttttcatCCTGCAGGTGGGGTTTTTTGTGA back to top
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