EWM20433.1, cds10240 (CDS) Nannochloropsis gaditana

Overview
NameEWM20433.1
Unique Namecds10240
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037269.1:1919..1993 +
Alignment locationKK037269.1:2305..2408 +
Alignment locationKK037269.1:2575..2647 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20433.1
Productcyclin-dependent kinases regulatory subunit
Orig transcript idgnl|cribi|Naga_100743g2.1104.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037269.1supercontigKK037269.1:1919..1993 +
KK037269.1supercontigKK037269.1:2305..2408 +
KK037269.1supercontigKK037269.1:2575..2647 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016301kinase activity
GO:0030234enzyme regulator activity
GO:0016538cyclin-dependent protein serine/threonine kinase regulator activity
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
GO:0007049cell cycle
Vocabulary: INTERPRO
TermDefinition
IPR000789Cyclin-dep_kinase_reg-sub
Homology
BLAST of EWM20433.1 vs. NCBI_GenBank
Match: gi|585100033|gb|EWM20433.1| (cyclin-dependent kinases regulatory subunit [Nannochloropsis gaditana])

HSP 1 Score: 172.555 bits (436), Expect = 1.185e-54
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0
Query:    1 MASRIEYSEKYMDDNHEYRHVILPKEIARSLPKQRLLTESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKVPI 83
            MASRIEYSEKYMDDNHEYRHVILPKEIARSLPKQRLLTESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKVPI
Sbjct:    1 MASRIEYSEKYMDDNHEYRHVILPKEIARSLPKQRLLTESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKVPI 83          
BLAST of EWM20433.1 vs. NCBI_GenBank
Match: gi|585100032|gb|EWM20432.1| (cyclin-dependent kinases regulatory subunit [Nannochloropsis gaditana])

HSP 1 Score: 171.4 bits (433), Expect = 6.697e-54
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0
Query:    1 MASRIEYSEKYMDDNHEYRHVILPKEIARSLPKQRLLTESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKV 81
            MASRIEYSEKYMDDNHEYRHVILPKEIARSLPKQRLLTESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKV
Sbjct:    1 MASRIEYSEKYMDDNHEYRHVILPKEIARSLPKQRLLTESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKV 81          
BLAST of EWM20433.1 vs. NCBI_GenBank
Match: gi|298715128|emb|CBJ27816.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 147.902 bits (372), Expect = 1.904e-44
Identity = 66/81 (81.48%), Postives = 75/81 (92.59%), Query Frame = 0
Query:    1 MASRIEYSEKYMDDNHEYRHVILPKEIARSLPKQRLLTESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKV 81
            MA+RIEYSEKY DD+ EYRHVILPK++A+ LPK R+LTE EWRG+GVQQSRGW HYAIHRPEPHILLF+RPLGTDPV+GKV
Sbjct:    1 MAARIEYSEKYQDDSFEYRHVILPKDLAKGLPKSRVLTEQEWRGLGVQQSRGWMHYAIHRPEPHILLFKRPLGTDPVSGKV 81          
BLAST of EWM20433.1 vs. NCBI_GenBank
Match: gi|1072227897|gb|OEU12635.1| (CKS-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 146.747 bits (369), Expect = 3.623e-44
Identity = 68/80 (85.00%), Postives = 75/80 (93.75%), Query Frame = 0
Query:    2 ASRIEYSEKYMDDNHEYRHVILPKEIARSLPKQRLLTESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKV 81
            ASRIEYSEKY DD +EYRHVILPKE+A++LPK RLL+ESEWRGIGVQQSRGW HYAIHRPEPHILLFRRPLGTDP +G+V
Sbjct:    5 ASRIEYSEKYADDMNEYRHVILPKELAKTLPKSRLLSESEWRGIGVQQSRGWGHYAIHRPEPHILLFRRPLGTDPQSGRV 84          
BLAST of EWM20433.1 vs. NCBI_GenBank
Match: gi|1210515168|dbj|GAX25880.1| (cyclin-dependent kinase regulatory subunit CKS1 [Fistulifera solaris] >gi|1210519800|dbj|GAX21352.1| cyclin-dependent kinase regulatory subunit CKS1 [Fistulifera solaris])

HSP 1 Score: 146.362 bits (368), Expect = 4.726e-44
Identity = 68/80 (85.00%), Postives = 75/80 (93.75%), Query Frame = 0
Query:    2 ASRIEYSEKYMDDNHEYRHVILPKEIARSLPKQRLLTESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKV 81
            ASRIEYSEKY D+ +EYRHVILPKE+A++LPK RLLTESEWR IGVQQSRGWQHYAIHRPEPHILLFRRPLGTDP +G+V
Sbjct:    4 ASRIEYSEKYADEVNEYRHVILPKELAKTLPKSRLLTESEWRSIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPQSGRV 83          
BLAST of EWM20433.1 vs. NCBI_GenBank
Match: gi|669157910|ref|XP_008614517.1| (cyclin-dependent kinase regulatory subunit CKS1 [Saprolegnia diclina VS20] >gi|813149475|ref|XP_012200384.1| hypothetical protein SPRG_05708 [Saprolegnia parasitica CBS 223.65] >gi|530733873|gb|EQC32115.1| cyclin-dependent kinase regulatory subunit CKS1 [Saprolegnia diclina VS20] >gi|641534856|gb|KDO28786.1| hypothetical protein SPRG_05708 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 144.05 bits (362), Expect = 4.459e-43
Identity = 68/81 (83.95%), Postives = 75/81 (92.59%), Query Frame = 0
Query:    1 MASRIEYSEKYMDDNHEYRHVILPKEIARSLPKQRLLTESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKV 81
            M+SRIEYSEKY+DD HEYRHVILPKE+AR+LP  RLLTESEWR +GVQQSRGW HYAIH+PEPHILLFRRPLGTDP TG+V
Sbjct:    5 MSSRIEYSEKYVDDTHEYRHVILPKEMARNLP-DRLLTESEWRQLGVQQSRGWVHYAIHKPEPHILLFRRPLGTDPTTGRV 84          
BLAST of EWM20433.1 vs. NCBI_GenBank
Match: gi|1173950110|gb|OQR98089.1| (cyclin-dependent kinase regulatory subunit CKS1 [Achlya hypogyna])

HSP 1 Score: 143.665 bits (361), Expect = 7.385e-43
Identity = 68/81 (83.95%), Postives = 75/81 (92.59%), Query Frame = 0
Query:    1 MASRIEYSEKYMDDNHEYRHVILPKEIARSLPKQRLLTESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKV 81
            +ASRIEYSEKY+DD HEYRHVILPKE+AR+LP  RLLTESEWR +GVQQSRGW HYAIH+PEPHILLFRRPLGTDP TG+V
Sbjct:    5 IASRIEYSEKYVDDTHEYRHVILPKEMARNLP-DRLLTESEWRQLGVQQSRGWVHYAIHKPEPHILLFRRPLGTDPTTGRV 84          
BLAST of EWM20433.1 vs. NCBI_GenBank
Match: gi|1173943955|gb|OQR92748.1| (cyclin-dependent kinase regulatory subunit [Thraustotheca clavata])

HSP 1 Score: 142.124 bits (357), Expect = 2.286e-42
Identity = 67/81 (82.72%), Postives = 75/81 (92.59%), Query Frame = 0
Query:    1 MASRIEYSEKYMDDNHEYRHVILPKEIARSLPKQRLLTESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKV 81
            ++SRIEYSEKY+DD HEYRHVILPKE+AR+LP  RLLTESEWR +GVQQSRGW HYAIH+PEPHILLFRRPLGTDP TG+V
Sbjct:    5 ISSRIEYSEKYVDDTHEYRHVILPKEMARNLP-DRLLTESEWRQLGVQQSRGWVHYAIHKPEPHILLFRRPLGTDPTTGRV 84          
BLAST of EWM20433.1 vs. NCBI_GenBank
Match: gi|953497712|emb|CEG40472.1| (cyclin-dependent kinase regulatory subunit 1 [Plasmopara halstedii])

HSP 1 Score: 141.739 bits (356), Expect = 3.038e-42
Identity = 66/83 (79.52%), Postives = 75/83 (90.36%), Query Frame = 0
Query:    1 MASRIEYSEKYMDDNHEYRHVILPKEIARSLPKQRLLTESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKVPI 83
            M+SRIEYSEKY+DD HEYRHVILPKE+ R+LP  RLLTE+EWR +GVQQSRGW HYAIH+PEPHILLFRRPLGTDP TG+V +
Sbjct:    5 MSSRIEYSEKYVDDTHEYRHVILPKEMQRNLP-DRLLTETEWRQLGVQQSRGWVHYAIHKPEPHILLFRRPLGTDPTTGRVNL 86          
BLAST of EWM20433.1 vs. NCBI_GenBank
Match: gi|675181505|ref|XP_008899637.1| (cyclin-dependent kinase regulatory subunit 1 [Phytophthora parasitica INRA-310] >gi|675181507|ref|XP_008899638.1| cyclin-dependent kinase regulatory subunit 1, variant 1 [Phytophthora parasitica INRA-310] >gi|566031941|gb|ETI54852.1| cyclin-dependent kinase regulatory subunit 1 [Phytophthora parasitica P1569] >gi|566031942|gb|ETI54853.1| cyclin-dependent kinase regulatory subunit 1, variant 1 [Phytophthora parasitica P1569] >gi|567969626|gb|ETK94708.1| cyclin-dependent kinase regulatory subunit 1 [Phytophthora parasitica] >gi|567998027|gb|ETL48106.1| cyclin-dependent kinase regulatory subunit 1 [Phytophthora parasitica] >gi|568027238|gb|ETM01201.1| cyclin-dependent kinase regulatory subunit 1 [Phytophthora parasitica] >gi|568057728|gb|ETM54381.1| cyclin-dependent kinase regulatory subunit 1 [Phytophthora parasitica] >gi|568057729|gb|ETM54382.1| cyclin-dependent kinase regulatory subunit 1, variant 1 [Phytophthora parasitica] >gi|568100303|gb|ETN15002.1| cyclin-dependent kinase regulatory subunit 1 [Phytophthora parasitica INRA-310] >gi|568100304|gb|ETN15003.1| cyclin-dependent kinase regulatory subunit 1, variant 1 [Phytophthora parasitica INRA-310] >gi|570335713|gb|ETO83661.1| cyclin-dependent kinase regulatory subunit 1 [Phytophthora parasitica P1976] >gi|570335714|gb|ETO83662.1| cyclin-dependent kinase regulatory subunit 1, variant 1 [Phytophthora parasitica P1976] >gi|570959713|gb|ETP24692.1| cyclin-dependent kinase regulatory subunit 1 [Phytophthora parasitica CJ01A1] >gi|570995917|gb|ETP52651.1| cyclin-dependent kinase regulatory subunit 1 [Phytophthora parasitica P10297] >gi|570995918|gb|ETP52652.1| cyclin-dependent kinase regulatory subunit 1, variant 1 [Phytophthora parasitica P10297] >gi|970645146|gb|KUF85705.1| Cyclin-dependent kinases regulatory subunit 1 [Phytophthora nicotianae])

HSP 1 Score: 140.969 bits (354), Expect = 6.337e-42
Identity = 66/81 (81.48%), Postives = 74/81 (91.36%), Query Frame = 0
Query:    1 MASRIEYSEKYMDDNHEYRHVILPKEIARSLPKQRLLTESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKV 81
            ++SRIEYSEKY+DD HEYRHVILPKE+ RSLP  RLLTE+EWR +GVQQSRGW HYAIH+PEPHILLFRRPLGTDP TG+V
Sbjct:    5 LSSRIEYSEKYVDDTHEYRHVILPKEMQRSLP-DRLLTETEWRQLGVQQSRGWVHYAIHKPEPHILLFRRPLGTDPTTGRV 84          
The following BLAST results are available for this feature:
BLAST of EWM20433.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100033|gb|EWM20433.1|1.185e-54100.00cyclin-dependent kinases regulatory subunit [Nanno... [more]
gi|585100032|gb|EWM20432.1|6.697e-54100.00cyclin-dependent kinases regulatory subunit [Nanno... [more]
gi|298715128|emb|CBJ27816.1|1.904e-4481.48conserved unknown protein [Ectocarpus siliculosus][more]
gi|1072227897|gb|OEU12635.1|3.623e-4485.00CKS-domain-containing protein [Fragilariopsis cyli... [more]
gi|1210515168|dbj|GAX25880.1|4.726e-4485.00cyclin-dependent kinase regulatory subunit CKS1 [F... [more]
gi|669157910|ref|XP_008614517.1|4.459e-4383.95cyclin-dependent kinase regulatory subunit CKS1 [S... [more]
gi|1173950110|gb|OQR98089.1|7.385e-4383.95cyclin-dependent kinase regulatory subunit CKS1 [A... [more]
gi|1173943955|gb|OQR92748.1|2.286e-4282.72cyclin-dependent kinase regulatory subunit [Thraus... [more]
gi|953497712|emb|CEG40472.1|3.038e-4279.52cyclin-dependent kinase regulatory subunit 1 [Plas... [more]
gi|675181505|ref|XP_008899637.1|6.337e-4281.48cyclin-dependent kinase regulatory subunit 1 [Phyt... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10271rna10271Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications