EWM20433.1, cds10240 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM20433.1 vs. NCBI_GenBank
Match: gi|585100033|gb|EWM20433.1| (cyclin-dependent kinases regulatory subunit [Nannochloropsis gaditana]) HSP 1 Score: 172.555 bits (436), Expect = 1.185e-54 Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0
Query: 1 MASRIEYSEKYMDDNHEYRHVILPKEIARSLPKQRLLTESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKVPI 83
MASRIEYSEKYMDDNHEYRHVILPKEIARSLPKQRLLTESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKVPI
Sbjct: 1 MASRIEYSEKYMDDNHEYRHVILPKEIARSLPKQRLLTESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKVPI 83
BLAST of EWM20433.1 vs. NCBI_GenBank
Match: gi|585100032|gb|EWM20432.1| (cyclin-dependent kinases regulatory subunit [Nannochloropsis gaditana]) HSP 1 Score: 171.4 bits (433), Expect = 6.697e-54 Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0
Query: 1 MASRIEYSEKYMDDNHEYRHVILPKEIARSLPKQRLLTESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKV 81
MASRIEYSEKYMDDNHEYRHVILPKEIARSLPKQRLLTESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKV
Sbjct: 1 MASRIEYSEKYMDDNHEYRHVILPKEIARSLPKQRLLTESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKV 81
BLAST of EWM20433.1 vs. NCBI_GenBank
Match: gi|298715128|emb|CBJ27816.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 147.902 bits (372), Expect = 1.904e-44 Identity = 66/81 (81.48%), Postives = 75/81 (92.59%), Query Frame = 0
Query: 1 MASRIEYSEKYMDDNHEYRHVILPKEIARSLPKQRLLTESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKV 81
MA+RIEYSEKY DD+ EYRHVILPK++A+ LPK R+LTE EWRG+GVQQSRGW HYAIHRPEPHILLF+RPLGTDPV+GKV
Sbjct: 1 MAARIEYSEKYQDDSFEYRHVILPKDLAKGLPKSRVLTEQEWRGLGVQQSRGWMHYAIHRPEPHILLFKRPLGTDPVSGKV 81
BLAST of EWM20433.1 vs. NCBI_GenBank
Match: gi|1072227897|gb|OEU12635.1| (CKS-domain-containing protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 146.747 bits (369), Expect = 3.623e-44 Identity = 68/80 (85.00%), Postives = 75/80 (93.75%), Query Frame = 0
Query: 2 ASRIEYSEKYMDDNHEYRHVILPKEIARSLPKQRLLTESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKV 81
ASRIEYSEKY DD +EYRHVILPKE+A++LPK RLL+ESEWRGIGVQQSRGW HYAIHRPEPHILLFRRPLGTDP +G+V
Sbjct: 5 ASRIEYSEKYADDMNEYRHVILPKELAKTLPKSRLLSESEWRGIGVQQSRGWGHYAIHRPEPHILLFRRPLGTDPQSGRV 84
BLAST of EWM20433.1 vs. NCBI_GenBank
Match: gi|1210515168|dbj|GAX25880.1| (cyclin-dependent kinase regulatory subunit CKS1 [Fistulifera solaris] >gi|1210519800|dbj|GAX21352.1| cyclin-dependent kinase regulatory subunit CKS1 [Fistulifera solaris]) HSP 1 Score: 146.362 bits (368), Expect = 4.726e-44 Identity = 68/80 (85.00%), Postives = 75/80 (93.75%), Query Frame = 0
Query: 2 ASRIEYSEKYMDDNHEYRHVILPKEIARSLPKQRLLTESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKV 81
ASRIEYSEKY D+ +EYRHVILPKE+A++LPK RLLTESEWR IGVQQSRGWQHYAIHRPEPHILLFRRPLGTDP +G+V
Sbjct: 4 ASRIEYSEKYADEVNEYRHVILPKELAKTLPKSRLLTESEWRSIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPQSGRV 83
BLAST of EWM20433.1 vs. NCBI_GenBank
Match: gi|669157910|ref|XP_008614517.1| (cyclin-dependent kinase regulatory subunit CKS1 [Saprolegnia diclina VS20] >gi|813149475|ref|XP_012200384.1| hypothetical protein SPRG_05708 [Saprolegnia parasitica CBS 223.65] >gi|530733873|gb|EQC32115.1| cyclin-dependent kinase regulatory subunit CKS1 [Saprolegnia diclina VS20] >gi|641534856|gb|KDO28786.1| hypothetical protein SPRG_05708 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 144.05 bits (362), Expect = 4.459e-43 Identity = 68/81 (83.95%), Postives = 75/81 (92.59%), Query Frame = 0
Query: 1 MASRIEYSEKYMDDNHEYRHVILPKEIARSLPKQRLLTESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKV 81
M+SRIEYSEKY+DD HEYRHVILPKE+AR+LP RLLTESEWR +GVQQSRGW HYAIH+PEPHILLFRRPLGTDP TG+V
Sbjct: 5 MSSRIEYSEKYVDDTHEYRHVILPKEMARNLP-DRLLTESEWRQLGVQQSRGWVHYAIHKPEPHILLFRRPLGTDPTTGRV 84
BLAST of EWM20433.1 vs. NCBI_GenBank
Match: gi|1173950110|gb|OQR98089.1| (cyclin-dependent kinase regulatory subunit CKS1 [Achlya hypogyna]) HSP 1 Score: 143.665 bits (361), Expect = 7.385e-43 Identity = 68/81 (83.95%), Postives = 75/81 (92.59%), Query Frame = 0
Query: 1 MASRIEYSEKYMDDNHEYRHVILPKEIARSLPKQRLLTESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKV 81
+ASRIEYSEKY+DD HEYRHVILPKE+AR+LP RLLTESEWR +GVQQSRGW HYAIH+PEPHILLFRRPLGTDP TG+V
Sbjct: 5 IASRIEYSEKYVDDTHEYRHVILPKEMARNLP-DRLLTESEWRQLGVQQSRGWVHYAIHKPEPHILLFRRPLGTDPTTGRV 84
BLAST of EWM20433.1 vs. NCBI_GenBank
Match: gi|1173943955|gb|OQR92748.1| (cyclin-dependent kinase regulatory subunit [Thraustotheca clavata]) HSP 1 Score: 142.124 bits (357), Expect = 2.286e-42 Identity = 67/81 (82.72%), Postives = 75/81 (92.59%), Query Frame = 0
Query: 1 MASRIEYSEKYMDDNHEYRHVILPKEIARSLPKQRLLTESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKV 81
++SRIEYSEKY+DD HEYRHVILPKE+AR+LP RLLTESEWR +GVQQSRGW HYAIH+PEPHILLFRRPLGTDP TG+V
Sbjct: 5 ISSRIEYSEKYVDDTHEYRHVILPKEMARNLP-DRLLTESEWRQLGVQQSRGWVHYAIHKPEPHILLFRRPLGTDPTTGRV 84
BLAST of EWM20433.1 vs. NCBI_GenBank
Match: gi|953497712|emb|CEG40472.1| (cyclin-dependent kinase regulatory subunit 1 [Plasmopara halstedii]) HSP 1 Score: 141.739 bits (356), Expect = 3.038e-42 Identity = 66/83 (79.52%), Postives = 75/83 (90.36%), Query Frame = 0
Query: 1 MASRIEYSEKYMDDNHEYRHVILPKEIARSLPKQRLLTESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKVPI 83
M+SRIEYSEKY+DD HEYRHVILPKE+ R+LP RLLTE+EWR +GVQQSRGW HYAIH+PEPHILLFRRPLGTDP TG+V +
Sbjct: 5 MSSRIEYSEKYVDDTHEYRHVILPKEMQRNLP-DRLLTETEWRQLGVQQSRGWVHYAIHKPEPHILLFRRPLGTDPTTGRVNL 86
BLAST of EWM20433.1 vs. NCBI_GenBank
Match: gi|675181505|ref|XP_008899637.1| (cyclin-dependent kinase regulatory subunit 1 [Phytophthora parasitica INRA-310] >gi|675181507|ref|XP_008899638.1| cyclin-dependent kinase regulatory subunit 1, variant 1 [Phytophthora parasitica INRA-310] >gi|566031941|gb|ETI54852.1| cyclin-dependent kinase regulatory subunit 1 [Phytophthora parasitica P1569] >gi|566031942|gb|ETI54853.1| cyclin-dependent kinase regulatory subunit 1, variant 1 [Phytophthora parasitica P1569] >gi|567969626|gb|ETK94708.1| cyclin-dependent kinase regulatory subunit 1 [Phytophthora parasitica] >gi|567998027|gb|ETL48106.1| cyclin-dependent kinase regulatory subunit 1 [Phytophthora parasitica] >gi|568027238|gb|ETM01201.1| cyclin-dependent kinase regulatory subunit 1 [Phytophthora parasitica] >gi|568057728|gb|ETM54381.1| cyclin-dependent kinase regulatory subunit 1 [Phytophthora parasitica] >gi|568057729|gb|ETM54382.1| cyclin-dependent kinase regulatory subunit 1, variant 1 [Phytophthora parasitica] >gi|568100303|gb|ETN15002.1| cyclin-dependent kinase regulatory subunit 1 [Phytophthora parasitica INRA-310] >gi|568100304|gb|ETN15003.1| cyclin-dependent kinase regulatory subunit 1, variant 1 [Phytophthora parasitica INRA-310] >gi|570335713|gb|ETO83661.1| cyclin-dependent kinase regulatory subunit 1 [Phytophthora parasitica P1976] >gi|570335714|gb|ETO83662.1| cyclin-dependent kinase regulatory subunit 1, variant 1 [Phytophthora parasitica P1976] >gi|570959713|gb|ETP24692.1| cyclin-dependent kinase regulatory subunit 1 [Phytophthora parasitica CJ01A1] >gi|570995917|gb|ETP52651.1| cyclin-dependent kinase regulatory subunit 1 [Phytophthora parasitica P10297] >gi|570995918|gb|ETP52652.1| cyclin-dependent kinase regulatory subunit 1, variant 1 [Phytophthora parasitica P10297] >gi|970645146|gb|KUF85705.1| Cyclin-dependent kinases regulatory subunit 1 [Phytophthora nicotianae]) HSP 1 Score: 140.969 bits (354), Expect = 6.337e-42 Identity = 66/81 (81.48%), Postives = 74/81 (91.36%), Query Frame = 0
Query: 1 MASRIEYSEKYMDDNHEYRHVILPKEIARSLPKQRLLTESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKV 81
++SRIEYSEKY+DD HEYRHVILPKE+ RSLP RLLTE+EWR +GVQQSRGW HYAIH+PEPHILLFRRPLGTDP TG+V
Sbjct: 5 LSSRIEYSEKYVDDTHEYRHVILPKEMQRSLP-DRLLTETEWRQLGVQQSRGWVHYAIHKPEPHILLFRRPLGTDPTTGRV 84 The following BLAST results are available for this feature:
BLAST of EWM20433.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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