rna10271, rna10271 (mRNA) Nannochloropsis gaditana

Overview
Namerna10271
Unique Namerna10271
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length336
Alignment locationKK037269.1:997..3323 +

Link to JBrowse

Properties
Property NameValue
Productcyclin-dependent kinases regulatory subunit
Orig transcript idgnl|cribi|Naga_100743g2.1104.mrna
Orig protein idgnl|cribi|Naga_100743g2.1104
GbkeymRNA
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037269.1supercontigKK037269.1:997..3323 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100743g2gene9975Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10271rna10271-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20433.1cds10240Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10271 ID=rna10271|Name=rna10271|organism=Nannochloropsis gaditana|type=mRNA|length=336bp
ATGATTTTGAGAAGTAGTACTATGGAGGGTAGTGTCGCGACGTCCGGCAC
AAAGAGCCAGCGCCGCCATACCCTTCCTTCTTCTTCCTCAATATTCCCGA
TCCGTGTGCTCCTTGCCTCTTACTTCGTGCTCGCTGCCCTCGCAGACGAT
CCTCTGATCAACATGTACATGCGTGGCAGTGGTGACAGGGTTCCCGGTAA
CTTCCCCTACGCCCTTCACTTTGTACCTGATATACCCGCATGGTCCACGG
GGGAGCTCTGGTTCGCGGTCCTCAGCGACACAGGCCTCCACGACCTGCAA
CGGCAGTGCGGCCAAGACCGGAGTCACCCGCGTTAA
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protein sequence of rna10271

>rna10271-protein ID=rna10271-protein|Name=rna10271|organism=Nannochloropsis gaditana|type=polypeptide|length=83bp
MASRIEYSEKYMDDNHEYRHVILPKEIARSLPKQRLLTESEWRGIGVQQS
RGWQHYAIHRPEPHILLFRRPLGTDPVTGKVPI
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mRNA from alignment at KK037269.1:997..3323+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10271 ID=rna10271|Name=rna10271|organism=Nannochloropsis gaditana|type=mRNA|length=2327bp|location=Sequence derived from alignment at KK037269.1:997..3323+ (Nannochloropsis gaditana)
GCGCTGCTGCCGTCGAGCATTGAATTGTCTTTCTCGAACCCAGAAACACT
AGTCCATCAGTTGGCATCTTTTATTGCAAGGCCATCTCTGTGTTACATGC
TTCTCGCGTCTATGTGGCGAATTACCTGGGCTCTCGCACATTGTTGGTTT
GTGCACGTGACATGAGCTGGTAAGTTGGTGGGGGTGAACAAAGTGGACGC
ACCGCTCGTGACGAGGGCGAGATGTTGCGGTATTCTGCCAGTAATTATGG
CATGTAATATCACTCTCTTGTCAATGAATGTACAAATGAATGAGAAAATG
GGTGACACTGGTACATGTAAGCAAGGGTGGCTTGAGCTTTTGGCAGCTTG
CCTGCATTAAAGACAGGCATAATCAAATCGCAGACGGTCATCGACCCCAC
CTTTCAACCATGTCGCAACCCTTTCGTGCCGAAGCAGAGCAGCAGCCAAT
CATTTTTATACGCAAAATGAAAGTGTGATACTAGGGGCTTCCAGATAGGA
AGGAGATGCGAGTCCGAAGGGCTCTCAACTCGACTGATATCGTAGAAAGG
TTTTTGGACGCGTACTCTCACAAGCATCGAACCTGGGGCGCCCTAAATTG
ATAATGAAATGACTCAAGGATCtcatccttctccatccctgtGTATTTTT
CCTCATGTCCAGGATTGTTGAAGACGGCGGCAGAGAAGGTGTCGGGCATC
CAGATAAAGAATACCGCCGACCCTACAGTGAAGGGCAAGGTAAAGAGACT
CGGTGACCTCCGCGACAAGCACTGGATGGATCTCACGAAGCCATCGCATA
AAACATGATTTTGCCAATCGTTGGTCGCCCTACTATTTTAATCTATGTAA
TCACCCATTTTTCAtttccagcagcagccacactAAGGCGAAGAAGTGTG
CCGTAGCCAACCTTTCGCAGTCATGGCCAGTCGTATCGAGTATTCAGAGA
AATACATGGACGATAATCACGAATACAGGCACGTCATCCTTCCCAAGGTT
CGTTTATATGCCCCAATCAATGCCTGCCTGTCTAGCTGCCCTCCCGCGTG
CTCGCCCTGTCGCCTATAGGGTCGAGCTTGATGCCGAGGGCTTGCCGCCT
CGTGACCCCAAATCCATCCGTACCCGAGACGGAACAGCGTGCATCGAAAG
CCCTTTTCTAGGAAGCGCTAGCCAGGCGTAGATCTGGCGTCAGAGCGACA
AGGAGAAACGGTCCTGGGTGTGGGTTGTGGGACGTCGGCGggtcgccccc
cctcccttagGCCTTGGTTGACAccacccccctctccttcctctcccatc
ctctccaGGAGATTGCCCGCTCTCTGCCCAAGCAGCGCTTGCTGACCGAG
TCGGAGTGGCGAGGCATTGGCGTCCAGCAGTCCCGAGGTTGGCAACACTA
CGCCATCCACAGGTAAGCCTGATTTGTCCCCGGCTGGCTTTgtttcccgc
ccctccaggcTCCTGCCGCGGTCAGAGGCCCATTTCGTCCCCTTCGTCAA
GGGCACGAAGCCCTCTTTATTCTGGCGTATTCTTCCCCCTGTGGGGATTT
TtaatccctcccttcccccgtgtCCCAGGCCAGAGCCTCACATCCTGCTC
TTCCGACGGCCGTTGGGAACGGACCCTGTGACCGGCAAGGTACCGATTTA
GGGCAGAGTCGGAGGGAATCGAGTGAAGGAGGATCGAGCGTTGATGGTGG
TCAGAAACGTCATTCCCGTGGCTCATACACGCTTCTGTTTCCGGTGCCTG
AACACCACTCCCCCTGTCCGTCTGGGACGCTTTCTCTCTGAACAGGTCAA
TGCGGAGCTAGAGCgggaggccaaggagaagTATGCAGAAAGCATGAACG
GGGCGGTGCAACGGAAATAGGGACGAAAACAAAGATGTGTGAATCGAGCA
GCGtgagatgaagaggaggtatGATATCTTGGTGGCTCATGGGGTAGGTG
GTGATCTGCTGCCAGAAAGCGGGGTGTACGAATAATctgaagggagcgag
ggcacTGTGCTAGAAAAATGAGCGTGGAGCGGACCCTCGAAAGGTAAGAA
GCAGGATGGCAGCgtaggcgaggaagaggagggttgCAAACATCCACAAT
ACGATTGAGTATGTCGTACCTGCTTTTATCAGGAGGCGCCTTGGGAGCAC
GAGTCCCGTATTCCCTCGGTCCAACTTAGGATGAAGGCGTGAAGGCACGA
GGGAGGTCACTGAAAGCATTGAGTAGAATTTCTTGAAATTGACCACTGGG
TTACAATTTTCCTGCTTCCGAGGCGCCGAAATAGTGACCGTAACGAAAAA
GAATCCAGTCTTGCACCGCAAAATGTT
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Coding sequence (CDS) from alignment at KK037269.1:997..3323+

>rna10271 ID=rna10271|Name=rna10271|organism=Nannochloropsis gaditana|type=CDS|length=756bp|location=Sequence derived from alignment at KK037269.1:997..3323+ (Nannochloropsis gaditana)
ATGGCCAGTCGTATCGAGTATTCAGAGAAATACATGGACGATAATCACGA
ATACAGGCACGTCATCCTTCCCAAGGAGATTGCCCGCTCTCTGCCCAAGC
AGCGCTTGCTGACCGAGTCGGAGTGGCGAGGCATTGGCGTCCAGCAGTCC
CGAGGTTGGCAACACTACGCCATCCACAGGCCAGAGCCTCACATCCTGCT
CTTCCGACGGCCGTTGGGAACGGACCCTGTGACCGGCAAGGTACCGATTT
AGATGGCCAGTCGTATCGAGTATTCAGAGAAATACATGGACGATAATCAC
GAATACAGGCACGTCATCCTTCCCAAGGAGATTGCCCGCTCTCTGCCCAA
GCAGCGCTTGCTGACCGAGTCGGAGTGGCGAGGCATTGGCGTCCAGCAGT
CCCGAGGTTGGCAACACTACGCCATCCACAGGCCAGAGCCTCACATCCTG
CTCTTCCGACGGCCGTTGGGAACGGACCCTGTGACCGGCAAGGTACCGAT
TTAGATGGCCAGTCGTATCGAGTATTCAGAGAAATACATGGACGATAATC
ACGAATACAGGCACGTCATCCTTCCCAAGGAGATTGCCCGCTCTCTGCCC
AAGCAGCGCTTGCTGACCGAGTCGGAGTGGCGAGGCATTGGCGTCCAGCA
GTCCCGAGGTTGGCAACACTACGCCATCCACAGGCCAGAGCCTCACATCC
TGCTCTTCCGACGGCCGTTGGGAACGGACCCTGTGACCGGCAAGGTACCG
ATTTAG
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Synonyms
Publications