EWM20478.1, cds10195 (CDS) Nannochloropsis gaditana

Overview
NameEWM20478.1
Unique Namecds10195
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037266.1:56604..56614 +
Alignment locationKK037266.1:56667..56758 +
Alignment locationKK037266.1:57086..57288 +
Alignment locationKK037266.1:57754..57834 +
Alignment locationKK037266.1:58197..58427 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20478.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100992g3.6886.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037266.1supercontigKK037266.1:56604..56614 +
KK037266.1supercontigKK037266.1:56667..56758 +
KK037266.1supercontigKK037266.1:57086..57288 +
KK037266.1supercontigKK037266.1:57754..57834 +
KK037266.1supercontigKK037266.1:58197..58427 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
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BLAST of EWM20478.1 vs. NCBI_GenBank
Match: gi|585100132|gb|EWM20478.1| (hypothetical protein Naga_100992g3 [Nannochloropsis gaditana])

HSP 1 Score: 405.601 bits (1041), Expect = 5.159e-143
Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 0 
Query:    1 MDWRSGRDLRHYHHSVIDPRLQLQEFERIAVENELRRQPPALWLGPTRGCDPHPHHPHSFRGRECLLSDRDHLGVGPGCRCLPRLYSLRGILQSLHSPVGRQVPLPSRDPKTTAEDKPGSRRLGIRLDPELGAGQHILPLFPKLKRIFLVSAGGDRVRRKRQPVRGGDGIYGPRRLPASGVARPRVRFPVGCQQRVMARHTWSGS 205
            MDWRSGRDLRHYHHSVIDPRLQLQEFERIAVENELRRQPPALWLGPTRGCDPHPHHPHSFRGRECLLSDRDHLGVGPGCRCLPRLYSLRGILQSLHSPVGRQVPLPSRDPKTTAEDKPGSRRLGIRLDPELGAGQHILPLFPKLKRIFLVSAGGDRVRRKRQPVRGGDGIYGPRRLPASGVARPRVRFPVGCQQRVMARHTWSGS
Sbjct:    1 MDWRSGRDLRHYHHSVIDPRLQLQEFERIAVENELRRQPPALWLGPTRGCDPHPHHPHSFRGRECLLSDRDHLGVGPGCRCLPRLYSLRGILQSLHSPVGRQVPLPSRDPKTTAEDKPGSRRLGIRLDPELGAGQHILPLFPKLKRIFLVSAGGDRVRRKRQPVRGGDGIYGPRRLPASGVARPRVRFPVGCQQRVMARHTWSGS 205
The following BLAST results are available for this feature:
BLAST of EWM20478.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585100132|gb|EWM20478.1|5.159e-143100.00hypothetical protein Naga_100992g3 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10226rna10226Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications