rna10226, rna10226 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna10226
Unique Name	rna10226
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	744
Alignment location	KK037266.1:56604..58427 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100992g3.6886.mrna
Orig protein id	gnl\|cribi\|Naga_100992g3.6886
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037266.1	supercontig	KK037266.1:56604..58427 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100992g3	gene9930	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna10226	rna10226-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20478.1	cds10195	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037266.1:56604..58427+
coding sequence from alignment at KK037266.1:56604..58427+

mRNA sequence

>rna10226 ID=rna10226|Name=rna10226|organism=Nannochloropsis gaditana|type=mRNA|length=744bp
CCCTCCCTCCCTCCCTTCCTCCCTCAGGAAGTTGCTCTGACCGTCCTAGC
CCGCAAAGGGGGGCTCCCGCCCAAGGAACAGGCTTCCTCCCTCCCCTCCT
CTCCCCGCTTTGTCGCCGAGTTACCCTTCGACAGCGTCTTGAAACGCATG
TCCGTTGTCTACGGGTATCCCTCCGCCGGTTCCTCCCCTTCGACCCTGCG
GGTCATGACCAAGGGTGCTTTTGAAAGTGTCTGGGGCATCTCCACTTCTA
TTCGGGGAAAAGACGGGAAAAAAAAGAAAAAGGCCGACGACGACGAACAT
TTGAGCGAGTGGGACCTTAAGTTTTGGCAGAGCCAGGTCGAACATTTGGC
GGGAAAAGGCTTGCGGGTCTTGGCCTTTGCGGAACGGATAGTGGAGGATG
AGGGGGAGGGCGGGGGCGAGGGGGGGGGGAGGGCGAGGACGGGGAGGACC
GGGAGCGGTGGGAGAAGGAGATGGTCTTCTTGGGCCTCGTGGGCATGCTC
GACCCCCCTCGGCCCGAGGTAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGTAAGTAGGGCCGAAGATGGCTGTGCACCGTCCGTCTT
GTGATGCTTACATGGGTATTCGCGCCTTTTCCCAAGAATTCGAAGAATTC
GAGGATGACTAATCATTGATATTTGATACCAACAGACCATCGGCGCGGTT
CAGTCGTGCACGGAGGCCGGCATCGTCGTCCGGTGGGGAGGGAG

protein sequence of rna10226

>rna10226-protein ID=rna10226-protein|Name=rna10226|organism=Nannochloropsis gaditana|type=polypeptide|length=205bp
MDWRSGRDLRHYHHSVIDPRLQLQEFERIAVENELRRQPPALWLGPTRGC
DPHPHHPHSFRGRECLLSDRDHLGVGPGCRCLPRLYSLRGILQSLHSPVG
RQVPLPSRDPKTTAEDKPGSRRLGIRLDPELGAGQHILPLFPKLKRIFLV
SAGGDRVRRKRQPVRGGDGIYGPRRLPASGVARPRVRFPVGCQQRVMARH
TWSGS

mRNA from alignment at KK037266.1:56604..58427+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna10226 ID=rna10226|Name=rna10226|organism=Nannochloropsis gaditana|type=mRNA|length=1824bp|location=Sequence derived from alignment at KK037266.1:56604..58427+ (Nannochloropsis gaditana)
ATGGATTGGAGGTGACCAAGAACTGCAACCACGATATCGCCGGGTGCGAA
CACGCTTTCAAAGGTCGGGCCGTGACCTTCGCCACTACCACCATTCTGTT
ATTGATCCACGCCTACAATTGCAAGAATTTGAAAGGATCGCTGTTGAAAA
TGAATGTAcgtggtgagggagggcgggagggagggagggagggcgcgtcG
TCGTGGGACTTGGCGAGGCctgaagggagaaagaaaggcaaaagGCTTGG
GCCTCTCATGGGGACGCAATGCACGTGGTGTgatttttccctccattATC
CATGGACAAGTCTGTGTGTGTGGTGTTTGTCGTGCCTTCAATTTCGTTTC
CCTCTGCCTTAGGGGCCTGTGCACTATCACCGACGTGGCAAAAtctaccc
ctccttcccccgtttTCCTCGCGCTGGCCGTCATCCTTGCTTATACCTTA
ACTCTggattcctccctcctttttccacccAGTACGGCGACAACCACCTG
CTCTTTGGCTCGGTCCTACTCGGGGTTGTGACCCTCATCCCCATCATCCA
CATTCCTTCCGTGGCCGAGAATGTCTTTTATCAGACCGTGATCACCTGGG
AGTGGGGCCTGGTTGTcggtgcctccctcgtctttaTTCTCTGCGCGGAA
TTCTACAAAGCTTGCATTCGCCCGTCGGTCGTCAGGTGCGttaggggggg
gaagggggggggagagaggcgcgagagggggggacaAGAAATGGATGTCT
GGAATGGGGGAAATGGTTTCGGTTCGGTATTTTTCGGGTTTGACGTCTTT
GGTCAGCGTGCGTGCCCAGACAGGGACATATGGACCGGAGAATGGCGTTG
TTTCCCCCCGCGACATAATAATTCCGTCGCCACAAGCGTACAGGATGCGT
GAAAAGAGAGACATGTATCCGTCGTGACTTggtctctctctctctctcta
tatGTATATGTATATGTATATGTACATCTGTTAGTTATACACCTATATTT
ATACACAGAGGATTGGAGGGCGTGGAATGCCATCCTAAATGTCTCTTTCT
CCGATGCACCGTCTGCCCTGACTCGAAACGTCGCTTCTCACCGTCTAAAT
CCTCTCCCTTTGTCACCCCGcacgcgtccttccctctccccctcccccag
gtcCCACTACCGAGCCGCGATCCGAAGACGACAGCGGAAGACAAACCTGG
ATCTCGCCGGCTTGGAATTCGTCTTGACCCGGTGCGTGCGCGACatggag
agaaggggggtgCTGTGTGTGCCCGTGAGACGAGAGAGGCATATCATGGG
GTCGGgtctggggaggggggcggccaTGGTCATGCTGGGCTTCACCCTGC
ATTTTGTCATGTCATCCCCCGGGGGGCCGCGATGGTCCGCTTCTTCAAGA
TACGTGTGCACCGTTGTGATGGACGGCAGGGTGTGTGAGGCCAACATTCT
AGGGCTTTCGATCTTGATCCGAGGCAATCAACGGCGAAGAGCGACCGAGC
GTTTGCTTTTGAGGGCgagcgagaaggagctgTAAGCATGCTGCCGTTGG
CTTCCATTCCTCACCCCTTTCtacctgccccccccccctgtaGGAACTCG
GGGCAGGACAGCATATACTACCGCTCTTCCCAAAGCTGAAAAGGATCTTC
CTTGTCTCGGCGGGAGGTGACAGGGTAAGGCGCAAACGTCAGCCCGTACG
AGGGGGCGATGGGATATATGGGCCACGGCGTTTACCGGCGTCGGGGGTCG
CCCGACCGAGGGTTCGATTCCCGGTGGGGTGTCAGCAGCGGGTTATGGCA
AGGCATACATGGTCAGGAAGCTAG

Coding sequence (CDS) from alignment at KK037266.1:56604..58427+

>rna10226 ID=rna10226|Name=rna10226|organism=Nannochloropsis gaditana|type=CDS|length=3090bp|location=Sequence derived from alignment at KK037266.1:56604..58427+ (Nannochloropsis gaditana)
ATGGATTGGAGGTCGGGCCGTGACCTTCGCCACTACCACCATTCTGTTAT
TGATCCACGCCTACAATTGCAAGAATTTGAAAGGATCGCTGTTGAAAATG
AATTACGGCGACAACCACCTGCTCTTTGGCTCGGTCCTACTCGGGGTTGT
GACCCTCATCCCCATCATCCACATTCCTTCCGTGGCCGAGAATGTCTTTT
ATCAGACCGTGATCACCTGGGAGTGGGGCCTGGTTGTcggtgcctccctc
gtctttaTTCTCTGCGCGGAATTCTACAAAGCTTGCATTCGCCCGTCGGT
CGTCAGgtcCCACTACCGAGCCGCGATCCGAAGACGACAGCGGAAGACAA
ACCTGGATCTCGCCGGCTTGGAATTCGTCTTGACCCGGAACTCGGGGCAG
GACAGCATATACTACCGCTCTTCCCAAAGCTGAAAAGGATCTTCCTTGTC
TCGGCGGGAGGTGACAGGGTAAGGCGCAAACGTCAGCCCGTACGAGGGGG
CGATGGGATATATGGGCCACGGCGTTTACCGGCGTCGGGGGTCGCCCGAC
CGAGGGTTCGATTCCCGGTGGGGTGTCAGCAGCGGGTTATGGCAAGGCAT
ACATGGTCAGGAAGCTAGATGGATTGGAGGTCGGGCCGTGACCTTCGCCA
CTACCACCATTCTGTTATTGATCCACGCCTACAATTGCAAGAATTTGAAA
GGATCGCTGTTGAAAATGAATTACGGCGACAACCACCTGCTCTTTGGCTC
GGTCCTACTCGGGGTTGTGACCCTCATCCCCATCATCCACATTCCTTCCG
TGGCCGAGAATGTCTTTTATCAGACCGTGATCACCTGGGAGTGGGGCCTG
GTTGTcggtgcctccctcgtctttaTTCTCTGCGCGGAATTCTACAAAGC
TTGCATTCGCCCGTCGGTCGTCAGgtcCCACTACCGAGCCGCGATCCGAA
GACGACAGCGGAAGACAAACCTGGATCTCGCCGGCTTGGAATTCGTCTTG
ACCCGGAACTCGGGGCAGGACAGCATATACTACCGCTCTTCCCAAAGCTG
AAAAGGATCTTCCTTGTCTCGGCGGGAGGTGACAGGGTAAGGCGCAAACG
TCAGCCCGTACGAGGGGGCGATGGGATATATGGGCCACGGCGTTTACCGG
CGTCGGGGGTCGCCCGACCGAGGGTTCGATTCCCGGTGGGGTGTCAGCAG
CGGGTTATGGCAAGGCATACATGGTCAGGAAGCTAGATGGATTGGAGGTC
GGGCCGTGACCTTCGCCACTACCACCATTCTGTTATTGATCCACGCCTAC
AATTGCAAGAATTTGAAAGGATCGCTGTTGAAAATGAATTACGGCGACAA
CCACCTGCTCTTTGGCTCGGTCCTACTCGGGGTTGTGACCCTCATCCCCA
TCATCCACATTCCTTCCGTGGCCGAGAATGTCTTTTATCAGACCGTGATC
ACCTGGGAGTGGGGCCTGGTTGTcggtgcctccctcgtctttaTTCTCTG
CGCGGAATTCTACAAAGCTTGCATTCGCCCGTCGGTCGTCAGgtcCCACT
ACCGAGCCGCGATCCGAAGACGACAGCGGAAGACAAACCTGGATCTCGCC
GGCTTGGAATTCGTCTTGACCCGGAACTCGGGGCAGGACAGCATATACTA
CCGCTCTTCCCAAAGCTGAAAAGGATCTTCCTTGTCTCGGCGGGAGGTGA
CAGGGTAAGGCGCAAACGTCAGCCCGTACGAGGGGGCGATGGGATATATG
GGCCACGGCGTTTACCGGCGTCGGGGGTCGCCCGACCGAGGGTTCGATTC
CCGGTGGGGTGTCAGCAGCGGGTTATGGCAAGGCATACATGGTCAGGAAG
CTAGATGGATTGGAGGTCGGGCCGTGACCTTCGCCACTACCACCATTCTG
TTATTGATCCACGCCTACAATTGCAAGAATTTGAAAGGATCGCTGTTGAA
AATGAATTACGGCGACAACCACCTGCTCTTTGGCTCGGTCCTACTCGGGG
TTGTGACCCTCATCCCCATCATCCACATTCCTTCCGTGGCCGAGAATGTC
TTTTATCAGACCGTGATCACCTGGGAGTGGGGCCTGGTTGTcggtgcctc
cctcgtctttaTTCTCTGCGCGGAATTCTACAAAGCTTGCATTCGCCCGT
CGGTCGTCAGgtcCCACTACCGAGCCGCGATCCGAAGACGACAGCGGAAG
ACAAACCTGGATCTCGCCGGCTTGGAATTCGTCTTGACCCGGAACTCGGG
GCAGGACAGCATATACTACCGCTCTTCCCAAAGCTGAAAAGGATCTTCCT
TGTCTCGGCGGGAGGTGACAGGGTAAGGCGCAAACGTCAGCCCGTACGAG
GGGGCGATGGGATATATGGGCCACGGCGTTTACCGGCGTCGGGGGTCGCC
CGACCGAGGGTTCGATTCCCGGTGGGGTGTCAGCAGCGGGTTATGGCAAG
GCATACATGGTCAGGAAGCTAGATGGATTGGAGGTCGGGCCGTGACCTTC
GCCACTACCACCATTCTGTTATTGATCCACGCCTACAATTGCAAGAATTT
GAAAGGATCGCTGTTGAAAATGAATTACGGCGACAACCACCTGCTCTTTG
GCTCGGTCCTACTCGGGGTTGTGACCCTCATCCCCATCATCCACATTCCT
TCCGTGGCCGAGAATGTCTTTTATCAGACCGTGATCACCTGGGAGTGGGG
CCTGGTTGTcggtgcctccctcgtctttaTTCTCTGCGCGGAATTCTACA
AAGCTTGCATTCGCCCGTCGGTCGTCAGgtcCCACTACCGAGCCGCGATC
CGAAGACGACAGCGGAAGACAAACCTGGATCTCGCCGGCTTGGAATTCGT
CTTGACCCGGAACTCGGGGCAGGACAGCATATACTACCGCTCTTCCCAAA
GCTGAAAAGGATCTTCCTTGTCTCGGCGGGAGGTGACAGGGTAAGGCGCA
AACGTCAGCCCGTACGAGGGGGCGATGGGATATATGGGCCACGGCGTTTA
CCGGCGTCGGGGGTCGCCCGACCGAGGGTTCGATTCCCGGTGGGGTGTCA
GCAGCGGGTTATGGCAAGGCATACATGGTCAGGAAGCTAG

Synonyms

Publications