EWM20487.1, cds10187 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM20487.1 vs. NCBI_GenBank
Match: gi|585100149|gb|EWM20487.1| (wd repeat-containing protein 92 [Nannochloropsis gaditana]) HSP 1 Score: 475.707 bits (1223), Expect = 7.868e-170 Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 0 Query: 1 MLPPFPPPSFSPSCLPPLFLSPFSPCNASNDSERVVAAGYDNGDVKLFDLRTSSLRHENNVGNGVTSLEFDRWDIPMNKLVITMLESSFLLWRLRGRDSSETMEGRVAGTEDKPEGGVVFSIKQKTHHNATVWSARHLPQNRDVFVTCGGEGGLALWQYHYATPSSSSSPSTTTPSSTSGPDPGALSLLNARLLSPQPLVAFDWHREKTGLCAIASLDQCLRVHLVTRLATL 232 MLPPFPPPSFSPSCLPPLFLSPFSPCNASNDSERVVAAGYDNGDVKLFDLRTSSLRHENNVGNGVTSLEFDRWDIPMNKLVITMLESSFLLWRLRGRDSSETMEGRVAGTEDKPEGGVVFSIKQKTHHNATVWSARHLPQNRDVFVTCGGEGGLALWQYHYATPSSSSSPSTTTPSSTSGPDPGALSLLNARLLSPQPLVAFDWHREKTGLCAIASLDQCLRVHLVTRLATL Sbjct: 1 MLPPFPPPSFSPSCLPPLFLSPFSPCNASNDSERVVAAGYDNGDVKLFDLRTSSLRHENNVGNGVTSLEFDRWDIPMNKLVITMLESSFLLWRLRGRDSSETMEGRVAGTEDKPEGGVVFSIKQKTHHNATVWSARHLPQNRDVFVTCGGEGGLALWQYHYATPSSSSSPSTTTPSSTSGPDPGALSLLNARLLSPQPLVAFDWHREKTGLCAIASLDQCLRVHLVTRLATL 232
BLAST of EWM20487.1 vs. NCBI_GenBank
Match: gi|553177429|ref|XP_005852467.1| (wd domain-containing, partial [Nannochloropsis gaditana CCMP526] >gi|422296066|gb|EKU23365.1| wd domain-containing, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 260.381 bits (664), Expect = 2.732e-86 Identity = 126/127 (99.21%), Postives = 126/127 (99.21%), Query Frame = 0 Query: 103 MEGRVAGTEDKPEGGVVFSIKQKTHHNATVWSARHLPQNRDVFVTCGGEGGLALWQYHYATPSSSSSPSTTTPSSTSGPDPGALSLLNARLLSPQPLVAFDWHREKTGLCAIASLDQCLRVHLVTRL 229 MEGRVAGTEDKPEGGVV SIKQKTHHNATVWSARHLPQNRDVFVTCGGEGGLALWQYHYATPSSSSSPSTTTPSSTSGPDPGALSLLNARLLSPQPLVAFDWHREKTGLCAIASLDQCLRVHLVTRL Sbjct: 1 MEGRVAGTEDKPEGGVVSSIKQKTHHNATVWSARHLPQNRDVFVTCGGEGGLALWQYHYATPSSSSSPSTTTPSSTSGPDPGALSLLNARLLSPQPLVAFDWHREKTGLCAIASLDQCLRVHLVTRL 127
BLAST of EWM20487.1 vs. NCBI_GenBank
Match: gi|298711225|emb|CBJ32445.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 185.267 bits (469), Expect = 1.194e-53 Identity = 96/206 (46.60%), Postives = 129/206 (62.62%), Query Frame = 0 Query: 27 NASNDSERVVAAGYDNGDVKLFDLRTSSLRHENNVGNGVTSLEFDRWDIPMNKLVITMLESSFLLWRLRGRDSSETMEGRVAGTEDKPEGGVVFSIKQKTHHNATVWSARHLPQNRDVFVTCGGEGGLALWQYHYATPSSSSSPSTTTPSSTSGPDPGALSLLNARLLSPQPLVAFDWHREKTGLCAIASLDQCLRVHLVTRLATL 232 NA D +R + AGYDNGDVKLFDLRT ++R E NV NGVT L+FDR DI MNKLV+T LES F + +R + PE G F+ + H +TVW ARHLPQNRD+F+T GG GG L++YHY + S + + P G + LLN+R++S QP+V+FDW ++ GLC ++ LDQ +RV++VT+L Sbjct: 173 NAYTDEDRCLTAGYDNGDVKLFDLRTQTMRWETNVKNGVTGLDFDRNDIEMNKLVVTTLESKFRTYDMRTQ---------------HPEAG--FAHLSEKAHKSTVWLARHLPQNRDLFMTGGGNGGFNLYKYHYPS-SRTKNDKENIPMGVVGK----VELLNSRVISSQPIVSFDWSPDREGLCCLSCLDQTVRVYIVTKLGKF 356
BLAST of EWM20487.1 vs. NCBI_GenBank
Match: gi|676384461|ref|XP_009035509.1| (hypothetical protein AURANDRAFT_58891 [Aureococcus anophagefferens] >gi|323453570|gb|EGB09441.1| hypothetical protein AURANDRAFT_58891 [Aureococcus anophagefferens]) HSP 1 Score: 184.496 bits (467), Expect = 2.884e-53 Identity = 104/221 (47.06%), Postives = 134/221 (60.63%), Query Frame = 0 Query: 15 LPPLFLSPFSPC------NASNDSERVVAAGYDNGDVKLFDLRTSSLRHENNVGNGVTSLEFDRWDIPMNKLVITMLESSFLLWRLRGRDSSETMEGRVAGTEDKPEGGVVFSIKQKTHHNATVWSARHLPQNRDVFVTCGGEGGLALWQYHYATPSSSSSPSTTTPSSTSGPDPGALSLLNARLLSPQPLVAFDWHREKTGLCAIASLDQCLRVHLVTRL 229 L P+ P C N+ D ERVVAAGYDNGDVKLFDLRT+++R E N NGVT +EFDR DI MNKLV+T LES F ++ LR T+ +G F+ + H ATVW ARHLPQNRDVF+T GG GG L+ YHY +++ P PG + LLN+R++S QP+V+FDW +K GL ++ LDQ LRV++ T+L Sbjct: 156 LEPVEGQPVRDCWCAAFGNSVGD-ERVVAAGYDNGDVKLFDLRTNAMRWETNASNGVTCVEFDRKDIEMNKLVVTTLESRFRVFDLR--------------TQHADDG---FAHCTEKAHKATVWLARHLPQNRDVFMTGGGNGGFNLYAYHYPKKRTATHKD-NAPVGV----PGTVELLNSRVISTQPIVSFDWSPDKEGLAVLSCLDQTLRVYICTKL 353
BLAST of EWM20487.1 vs. NCBI_GenBank
Match: gi|223993191|ref|XP_002286279.1| (hypothetical protein THAPSDRAFT_261002, partial [Thalassiosira pseudonana CCMP1335] >gi|220977594|gb|EED95920.1| hypothetical protein THAPSDRAFT_261002, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 182.956 bits (463), Expect = 9.145e-53 Identity = 93/203 (45.81%), Postives = 129/203 (63.55%), Query Frame = 0 Query: 27 NASNDSERVVAAGYDNGDVKLFDLRTSSLRHENNVGNGVTSLEFDRWDIPMNKLVITMLESSFLLWRLRGRDSSETMEGRVAGTEDKPEGGVVFSIKQKTHHNATVWSARHLPQNRDVFVTCGGEGGLALWQYHYATPSSSSSPSTTTPSSTSGPDPGALSLLNARLLSPQPLVAFDWHREKTGLCAIASLDQCLRVHLVTRL 229 N+ N ER + AG+DNGDVKLFDLRT+++R E N NGVTS++FDR DI MNK+V+T LES F + R + S E G+ F ++ H +TVW+A+HLPQNRD+F+T GG GG +++YHY TP G++ LLN+R++S QP+V+FDW ++ GLC +++LDQ LRV +VTRL Sbjct: 175 NSYNYDERSILAGFDNGDVKLFDLRTNTMRWETNCKNGVTSVQFDRQDIEMNKIVVTTLESKFRCYDARTQHS---------------EDGLAFLSERA--HRSTVWTAKHLPQNRDIFMTGGGNGGFNIYKYHYPQNRIGKHAKDGTPVGV----IGSVELLNSRVISTQPIVSFDWSPDREGLCCMSALDQSLRVFIVTRL 356
BLAST of EWM20487.1 vs. NCBI_GenBank
Match: gi|115898439|ref|XP_786049.2| (PREDICTED: WD repeat-containing protein 92 [Strongylocentrotus purpuratus]) HSP 1 Score: 182.956 bits (463), Expect = 9.848e-53 Identity = 96/209 (45.93%), Postives = 126/209 (60.29%), Query Frame = 0 Query: 27 NASNDSERVVAAGYDNGDVKLFDLRTSSLRHENNVGNGVTSLEFDRWDIPMNKLVITMLESSFLLWRLRGRDSSETMEGRVAGTEDKPEGGVVFSIKQKTHHNATVWSARHLPQNRDVFVTCGGEGGLALWQYHYATPSSSSSPSTTTPSSTSGPDPGAL---SLLNARLLSPQPLVAFDWHREKTGLCAIASLDQCLRVHLVTRLATL 232 +A N+ +R VAAGYDNGD+KLFDLR SLR E N+ NGV LEFDR DI MNKLV + LE+ + L+ +R + E S+ +K H +TVW ARHLPQNRDVF+TCGG G L LW+Y Y P++ ++G G + S+L + +S QP+ FDW +K GLC +S DQC+RV +VT+L TL Sbjct: 171 HAHNNEDRCVAAGYDNGDIKLFDLRNMSLRWETNIKNGVCGLEFDRKDINMNKLVASTLEAKYHLFDMRTQHPKSGYE----------------SLSEKA-HKSTVWCARHLPQNRDVFMTCGGSGTLNLWKYEY--------PTSRVEEDSNGVQKGVMGSVSMLQSVGISTQPIAGFDWSPDKAGLCVCSSFDQCIRVLIVTKLGTL 354
BLAST of EWM20487.1 vs. NCBI_GenBank
Match: gi|813142468|ref|XP_012199301.1| (WD repeat-containing protein 92 [Saprolegnia parasitica CBS 223.65] >gi|641536226|gb|KDO30122.1| WD repeat-containing protein 92 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 181.8 bits (460), Expect = 2.785e-52 Identity = 94/202 (46.53%), Postives = 125/202 (61.88%), Query Frame = 0 Query: 27 NASNDSERVVAAGYDNGDVKLFDLRTSSLRHENNVGNGVTSLEFDRWDIPMNKLVITMLESSFLLWRLRGRDSSETMEGRVAGTEDKPEGGVVFSIKQKTHHNATVWSARHLPQNRDVFVTCGGEGGLALWQYHYATPSSSSSPSTTTPSSTSGPDPGALSLLNARLLSPQPLVAFDWHREKTGLCAIASLDQCLRVHLVTR 228 N+ ND ER + AGYDNGDVK+FDLRT+S+R E NV NGV ++FDR DI MNKL++T LES F ++ LR P G FS + H +TVW R LPQNRD+F+T GG GG L++YHY SS +TT P G + LLN+R+LS QP+V+ DW ++ GLC + LDQ +RV++V++ Sbjct: 173 NSYNDDERCIVAGYDNGDVKMFDLRTNSMRWETNVQNGVVGVQFDRKDIEMNKLLVTTLESKFRIYDLR---------------TFHPTKG--FSYMSEKAHKSTVWQGRFLPQNRDLFMTGGGNGGFNLYKYHYP-----SSRTTTDPDGILMGVGGTVELLNSRVLSTQPIVSMDWSPDREGLCVLTCLDQTVRVYIVSK 352
BLAST of EWM20487.1 vs. NCBI_GenBank
Match: gi|301128219|ref|XP_002999335.1| (WD domain-containing protein, putative [Phytophthora infestans T30-4] >gi|262110852|gb|EEY68904.1| WD domain-containing protein, putative [Phytophthora infestans T30-4]) HSP 1 Score: 179.104 bits (453), Expect = 3.012e-52 Identity = 92/205 (44.88%), Postives = 126/205 (61.46%), Query Frame = 0 Query: 27 NASNDSERVVAAGYDNGDVKLFDLRTSSLRHENNVGNGVTSLEFDRWDIPMNKLVITMLESSFLLWRLRGRDSSETMEGRVAGTEDKPEGGVVFSIKQKTHHNATVWSARHLPQNRDVFVTCGGEGGLALWQYHYATPSSSSSPSTTTPSSTSG---PDPGALSLLNARLLSPQPLVAFDWHREKTGLCAIASLDQCLRVHLVTR 228 N+ ND ER V GYDNGD+K+FDLRT++LR E N NGV +++FDR DI MNKL++T LES F ++ LR PE G F+ + H +T+W R LPQNRD+F+T GG GG L++YHY P + T + G G + LLN+R+LS QP+V+ DW R++ GLC +A LDQ +RV++VT+ Sbjct: 82 NSYNDVERCVVGGYDNGDIKMFDLRTNTLRWETNCQNGVVNVQFDRKDIEMNKLLVTTLESKFRVYDLR---------------TFHPEQG--FACMTEKAHKSTIWQGRFLPQNRDLFMTGGGNGGFNLYKYHY--------PLSRTAKDSDGRLYGVCGTVELLNSRVLSTQPIVSMDWSRDREGLCTLACLDQTVRVYIVTK 261
BLAST of EWM20487.1 vs. NCBI_GenBank
Match: gi|669150096|ref|XP_008610610.1| (WD repeat-containing protein 92 [Saprolegnia diclina VS20] >gi|530737606|gb|EQC35848.1| WD repeat-containing protein 92 [Saprolegnia diclina VS20]) HSP 1 Score: 181.415 bits (459), Expect = 3.272e-52 Identity = 94/202 (46.53%), Postives = 125/202 (61.88%), Query Frame = 0 Query: 27 NASNDSERVVAAGYDNGDVKLFDLRTSSLRHENNVGNGVTSLEFDRWDIPMNKLVITMLESSFLLWRLRGRDSSETMEGRVAGTEDKPEGGVVFSIKQKTHHNATVWSARHLPQNRDVFVTCGGEGGLALWQYHYATPSSSSSPSTTTPSSTSGPDPGALSLLNARLLSPQPLVAFDWHREKTGLCAIASLDQCLRVHLVTR 228 N+ ND ER + AGYDNGDVK+FDLRT+S+R E NV NGV ++FDR DI MNKL++T LES F ++ LR P G FS + H +TVW R LPQNRD+F+T GG GG L++YHY SS +TT P G + LLN+R+LS QP+V+ DW ++ GLC + LDQ +RV++V++ Sbjct: 173 NSYNDDERCIVAGYDNGDVKMFDLRTNSMRWETNVQNGVVGVQFDRKDIEMNKLLVTTLESKFRIYDLR---------------TFHPTKG--FSYMSEKAHKSTVWQGRFLPQNRDLFMTGGGNGGFNLYKYHYP-----SSRTTTDPDGILMGVGGTVELLNSRVLSTQPIVSMDWSPDREGLCVLTCLDQTVRVYIVSK 352
BLAST of EWM20487.1 vs. NCBI_GenBank
Match: gi|260830383|ref|XP_002610140.1| (hypothetical protein BRAFLDRAFT_216906 [Branchiostoma floridae] >gi|229295504|gb|EEN66150.1| hypothetical protein BRAFLDRAFT_216906 [Branchiostoma floridae]) HSP 1 Score: 181.415 bits (459), Expect = 4.084e-52 Identity = 100/209 (47.85%), Postives = 121/209 (57.89%), Query Frame = 0 Query: 27 NASNDSERVVAAGYDNGDVKLFDLRTSSLRHENNVGNGVTSLEFDRWDIPMNKLVITMLESSFLLWRLRGRDSSETMEGRVAGTEDKPEGGVVFSIKQKTHHNATVWSARHLPQNRDVFVTCGGEGGLALWQYHYATPSSSSSPSTTTPSSTSGPD---PGALSLLNARLLSPQPLVAFDWHREKTGLCAIASLDQCLRVHLVTRLATL 232 NA + +ER V AGYDNGD+KLFDLR +LR E NV NGV S+EFDR DI MNK+V T LES F ++ +R + P G F+ + H +TVW ARHLPQNRDVF+TCGG G L LWQY Y P + G D G +SLL LS QP+ FDW +K GLC + DQCLRV +VT+L L Sbjct: 172 NAYSPTERCVCAGYDNGDIKLFDLRNMALRWETNVKNGVCSVEFDRKDIDMNKMVATTLESKFHVFDMRTQ---------------HPTKG--FASLSEKAHKSTVWLARHLPQNRDVFMTCGGSGTLNLWQYSY--------PDKRVKADDKGVDMGVAGTVSLLQNVTLSTQPIAGFDWSPDKVGLCVCTAFDQCLRVLIVTKLNRL 355 The following BLAST results are available for this feature:
BLAST of EWM20487.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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