EWM20523.1, cds10148 (CDS) Nannochloropsis gaditana

Overview
NameEWM20523.1
Unique Namecds10148
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037264.1:60137..60442 +
Alignment locationKK037264.1:60602..60761 +
Alignment locationKK037264.1:61002..61254 +
Alignment locationKK037264.1:61561..61708 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20523.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100335g2.5839.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037264.1supercontigKK037264.1:60137..60442 +
KK037264.1supercontigKK037264.1:60602..60761 +
KK037264.1supercontigKK037264.1:61002..61254 +
KK037264.1supercontigKK037264.1:61561..61708 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005737cytoplasm
Homology
BLAST of EWM20523.1 vs. NCBI_GenBank
Match: gi|585100202|gb|EWM20523.1| (hypothetical protein Naga_100335g2 [Nannochloropsis gaditana])

HSP 1 Score: 565.844 bits (1457), Expect = 0.000e+0
Identity = 288/288 (100.00%), Postives = 288/288 (100.00%), Query Frame = 0
Query:    1 MASSAPPSGGTAPSPIASVKEWYHNWCASTPFITRSTLHLLLALYALSWVVDLTAYLANIPYMSIYKLQLWRPFLSPFYTEGLLSVLFLCLSLGGMATTLEQAKGSTSFLCLMAAISFLTNFLFLLICLLLSVLQPSALYLSAGSFWIVVLGLLTVDCLASNLPTRQLFGLPCQIPSLYFPLLLFLLFSLFAGPRLDLGLAVGVGYLVGWGYLDVLLPPLACLTRWEEGRIGSWLGSRTGSSGSSASRPPANARELAEARAAKFGGPNGPTASSSNENEEETATLLRR 288
            MASSAPPSGGTAPSPIASVKEWYHNWCASTPFITRSTLHLLLALYALSWVVDLTAYLANIPYMSIYKLQLWRPFLSPFYTEGLLSVLFLCLSLGGMATTLEQAKGSTSFLCLMAAISFLTNFLFLLICLLLSVLQPSALYLSAGSFWIVVLGLLTVDCLASNLPTRQLFGLPCQIPSLYFPLLLFLLFSLFAGPRLDLGLAVGVGYLVGWGYLDVLLPPLACLTRWEEGRIGSWLGSRTGSSGSSASRPPANARELAEARAAKFGGPNGPTASSSNENEEETATLLRR
Sbjct:    1 MASSAPPSGGTAPSPIASVKEWYHNWCASTPFITRSTLHLLLALYALSWVVDLTAYLANIPYMSIYKLQLWRPFLSPFYTEGLLSVLFLCLSLGGMATTLEQAKGSTSFLCLMAAISFLTNFLFLLICLLLSVLQPSALYLSAGSFWIVVLGLLTVDCLASNLPTRQLFGLPCQIPSLYFPLLLFLLFSLFAGPRLDLGLAVGVGYLVGWGYLDVLLPPLACLTRWEEGRIGSWLGSRTGSSGSSASRPPANARELAEARAAKFGGPNGPTASSSNENEEETATLLRR 288          
BLAST of EWM20523.1 vs. NCBI_GenBank
Match: gi|553192779|ref|XP_005855643.1| (hypothetical protein NGA_0645800, partial [Nannochloropsis gaditana CCMP526] >gi|422293409|gb|EKU20709.1| hypothetical protein NGA_0645800, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 474.937 bits (1221), Expect = 4.489e-168
Identity = 242/248 (97.58%), Postives = 245/248 (98.79%), Query Frame = 0
Query:    1 MASSAPPSGGTAPSPIASVKEWYHNWCASTPFITRSTLHLLLALYALSWVVDLTAYLANIPYMSIYKLQLWRPFLSPFYTEGLLSVLFLCLSLGGMATTLEQAKGSTSFLCLMAAISFLTNFLFLLICLLLSVLQPSALYLSAGSFWIVVLGLLTVDCLASNLPTRQLFGLPCQIPSLYFPLLLFLLFSLFAGPRLDLGLAVGVGYLVGWGYLDVLLPPLACLTRWEEGRIGSWLGSRTGSSGSSASR 248
            MASSAPPSGGTAPSPIASVKEWYHNWCASTPFITRSTLHLLLALYALSWVVDLTAYLANIPYMSIYKLQLWRPFLSPFYTEGLLSVLFLCLSLGGMATTLEQAKGSTSFLCLMAAISFLTNFLFLLICLLLSVLQPSALYLSAGSFWIVVLGLLTVDCLASNLPTRQLFGLPCQIPSLYFPLLLFLLFSLFAGPRLDLGLAVGVGYLVGWGYLDVLLPPLACLTRWEEGRIGSWLGSRTG   ++A+R
Sbjct:    1 MASSAPPSGGTAPSPIASVKEWYHNWCASTPFITRSTLHLLLALYALSWVVDLTAYLANIPYMSIYKLQLWRPFLSPFYTEGLLSVLFLCLSLGGMATTLEQAKGSTSFLCLMAAISFLTNFLFLLICLLLSVLQPSALYLSAGSFWIVVLGLLTVDCLASNLPTRQLFGLPCQIPSLYFPLLLFLLFSLFAGPRLDLGLAVGVGYLVGWGYLDVLLPPLACLTRWEEGRIGSWLGSRTGFVSAAAAR 248          
BLAST of EWM20523.1 vs. NCBI_GenBank
Match: gi|219111855|ref|XP_002177679.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410564|gb|EEC50493.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 131.339 bits (329), Expect = 3.263e-32
Identity = 75/218 (34.40%), Postives = 124/218 (56.88%), Query Frame = 0
Query:   23 YHNWCASTPFITRSTLHLLLALYALSWVVDLTAYLANIPYMSIYKLQLWRPFLSPFYTEGLLSVLFLCLSLGGMATTLEQAKGSTSFLCLMAAISFLTNFLFLLICLLLSVL---QPSALYLSAGSFWIVVLGLLTVDCLASNLPT-RQLFGLPCQIPSLYFPLLLFLLFSLFAGPRLDLG--LAVGVGYLVGWGYLDVLLPPLACLTRWEEGRIGSW 234
            Y ++  +TP +TRS L +L+  Y LSWV+D    +ANIP  S++  +++R   SP       S+LF  LS       +E + GST+F  L   +  L N LFL+  +LL  +   + + L+ +A   W+++ G++ ++C+ +   T R LF   C+IP++Y+PL LF +F LF G    +   +++G+GY  G+GYLD L P    +++WEE  +  W
Sbjct:   25 YEDFRRNTPVVTRSILTVLVLSYLLSWVIDPHFAMANIPQFSVFGFEIYRILTSPLVNTRFFSLLFAFLSFTSQGKRMENSMGSTAFGVLCLTMGVLANVLFLVTNVLLYYVSGGEQAFLFTAAAGIWLILFGIIAMECVQAPRGTQRPLF--FCKIPTIYYPLALFAVFGLF-GQSFSVANLISMGIGYAYGFGYLDGLKPSAPRISQWEETILADW 239          
BLAST of EWM20523.1 vs. NCBI_GenBank
Match: gi|1210529193|dbj|GAX12339.1| (hypothetical protein FisN_1Hh272 [Fistulifera solaris])

HSP 1 Score: 111.309 bits (277), Expect = 5.990e-25
Identity = 74/204 (36.27%), Postives = 110/204 (53.92%), Query Frame = 0
Query:   13 PSPIASVKEWYHNWCASTPFITRSTLHLLLALYALSWVVDLTAYLANIPYMSIYKLQLWRPFLSPFYTEGLLSVLFLCLSLGGMATTLEQAKGSTSF--LCLMAAISFLTNFLFLLICLLLSVL--QPSALYLSAGSFWIVVLGLLTVDCL-ASNLPTRQLFGLPCQIPSLYFPLLLFLLFSLFA-GPRLDLGLAVGVGYLVGW 210
            P P     + Y  +  STPF+TR+ L +    Y +SW  D    L NIP+ SI + +++R  LSP     L +++    S       LEQ+ GSTSF  LCLM     LTN LF+ +   L VL  + S L+  +   WI++ G L+++C+ A    TR+LF     +P LYFP  L+LLF L   G  +  G+++G+GY +G+
Sbjct:    8 PPPSNPALQAYEQFSQSTPFVTRTILIVQAVSYIVSWFFDPHYALGNIPHFSILRFEIYRILLSPLVNSSLFALILAFWSFQDHGKRLEQSLGSTSFAWLCLMMGT--LTNLLFIAVSFTLYVLFGKTSFLFQDSSGIWIILFGTLSMECVRAPRGSTRRLF--VVDVPVLYFPFSLYLLFVLMGQGLLMGQGISLGLGYALGF 207          
BLAST of EWM20523.1 vs. NCBI_GenBank
Match: gi|223992547|ref|XP_002285957.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220977272|gb|EED95598.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 105.531 bits (262), Expect = 9.067e-23
Identity = 92/248 (37.10%), Postives = 133/248 (53.63%), Query Frame = 0
Query:    3 SSAPPSGGTAPSPIASVKEWYHNWCASTPFITRSTLHLLLALYALSWVVDLTAYLANIPYMSIYKLQLWRPFLSPFYTEGLLSVLFLCLSLGGMATTLEQAKGSTSFLCLMAAISFLTNFLFLLICLLLSVLQPSALYLSAGS--FWIVVLGLLTVDCLASNLPT-RQLFGLPCQIPSLYFPLLLFLLFSLFAGPRLDLGLAVGVGYLVGWGYLDVLLPPLACLTRWEEGRIGSWLGSRTGSSGSSAS 247
            S+ PP     P+P+ +    Y  +   TP +TR  L+ LL  Y LS+  +    LANIP  +I+K +L+R F SP     +LS++F  +        LEQ+ GS  F  L   ++  +N LFLL+ +LL  L  S  YL   S   W V+L ++ V+C  +   T R+LF L   +P+LY+PL+L  LFS+FAG +L   L V VGY  G+G LD L   +    +WE G +  ++G     S SSAS
Sbjct:    7 SNGPPQ----PNPVLTA---YEGYVRDTPLLTRYILNSLLLSYLLSFFANPAYALANIPLFTIFKFELYRIFTSPLVCADILSLIFAFMGFMNHGIKLEQSVGSCMFGVLFFTLTVASNVLFLLVSVLLWGLTNSESYLVGASMGIWSVLLAIIAVECSQAPPDTKRKLFFL--TVPTLYYPLVLLALFSMFAGVKLAYCLGVAVGYAYGYGKLDRLKVKVERARKWEGGCLRGFVGRMGWISVSSAS 245          
BLAST of EWM20523.1 vs. NCBI_GenBank
Match: gi|298713038|emb|CBJ48813.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 105.916 bits (263), Expect = 1.055e-22
Identity = 61/181 (33.70%), Postives = 102/181 (56.35%), Query Frame = 0
Query:   57 LANIPYMSIYKLQLWRPFLSPFYTEGLLSVLFLCLSLGGMATTLEQAKGSTSFLCLMAAISFLTNFLFLLICLLLSVL--QPSALYLSAGSFWIVVLGLLTVDCLASNLPTRQLFGLPCQIPSLYFPLLLFLLFSLFAGPRLDLGLAVGVGYLVGWGYLDVLLPPLACLTRWEEGRIGSWL 235
            L N P+ ++   +++R   + F + GLL+V+   ++   +   LE++ GST  L LMA ++ +TN  F+ +C +L +L  +  A Y S+G  W +++ L+ V+C+A+    R+ F LP  IP  Y+PL L  +F    G  +DL  AVG+GY    G LD L P  + L  WE G + +++
Sbjct:   21 LNNSPFRTVESFEVYRVVTTVFCSGGLLAVILGLMNFNTVGPNLERSLGSTGLLALMATLTVVTNLAFIALCYVLVILGEKKYAFYSSSG-IWNLLVALIAVECMATPDVPRRFFILPWDIPGKYYPLFLACIFGFMRGAWMDLFCAVGIGYAYADGRLDRLKPSRSRLASWESGCLANFV 200          
BLAST of EWM20523.1 vs. NCBI_GenBank
Match: gi|1210520173|dbj|GAX21056.1| (hypothetical protein FisN_1Lh272 [Fistulifera solaris])

HSP 1 Score: 98.2117 bits (243), Expect = 4.193e-20
Identity = 73/202 (36.14%), Postives = 111/202 (54.95%), Query Frame = 0
Query:   13 PSPIASVKEWYHNWCASTPFITRSTLHLLLALYALSWVVDLTAYLANIPYMSIYKLQLWRPFLSPFYTEGLLSVLFLCLSLGGMATTLEQAKGSTSFLCLMAAISFLTNFLFLLICLLLSVL--QPSALYLSAGSFWIVVLGLLTVDCL-ASNLPTRQLFGLPCQIPSLYFPLLLFLLFSLFA-GPRLDLGLAVGVGYLVGW 210
            P P     + Y  +  STPF+TR+ L +    Y +SW  D    L NIP+ SI + +++R  LSP       +++    SL      LEQ+ GSTSF+ L   I  LTN LF+ +   L VL  + S LY  +   WI++ G L+++C+ A    TR+LF +   +P LY+PL L+LLF L   G  +  G+++G+GY +G+
Sbjct:    8 PPPSNPAVQAYEQFSQSTPFVTRTILIVQAVSYMVSWFFDPHYALGNIPHFSILRFEIYRILLSPLVNSSFFALILAFWSLQDHGKRLEQSLGSTSFVWLCLMIGTLTNLLFIAVSFTLYVLFGKISFLYQDSSGIWIILFGTLSMECVRAPRGSTRKLFVI--DVPVLYYPLSLYLLFVLMGQGVLMGQGISMGLGYALGF 207          
BLAST of EWM20523.1 vs. NCBI_GenBank
Match: gi|551665103|ref|XP_005835314.1| (hypothetical protein GUITHDRAFT_136846 [Guillardia theta CCMP2712] >gi|428179463|gb|EKX48334.1| hypothetical protein GUITHDRAFT_136846 [Guillardia theta CCMP2712])

HSP 1 Score: 88.5817 bits (218), Expect = 1.170e-16
Identity = 63/205 (30.73%), Postives = 94/205 (45.85%), Query Frame = 0
Query:   30 TPFITRSTLHLLLALYALSWVVDLTAYLANIPYMSIYKLQLWRPFLSPFYTEGLLSVLFLCLSLGGMATTLEQAKGSTSFLCLMAAISFLTNFLFLLICLLLSVLQPSALYLS----AGSFWIVVLGLLTVDCLASNLPTRQLFGLPCQIPSLYFPLLLFLLFSLFAGPRLDLGLAVGVGYLVGWGYLDVLLPPLACLTRWEEGR 230
            +P +TR+   L + L    W+VD            +  L LWR F SPF  +G+  VL  CL  GG+ +  E+  G+ +F  L   I+   N LF    L  + + P    LS    A   W+ VL  L +    S  P    +GL C IP+ ++P  L +LF+L     L+    + VGY   +GYL+ ++P     + WE  R
Sbjct:   21 SPLVTRAVCTLTVWL----WLVD------------VILLPLWRWFTSPFVEQGIFGVLIGCLVFGGIGSQFERMFGTLAFGYLFMVINVSANILFTFAALFFAPILPEMHLLSPLNCANGLWVSVLAFLVIHTQRSPHPFMSFWGL-CNIPTKFYPWFLLILFALLGASVLENLCGILVGYAFQFGYLERVMPSEQKFSSWETSR 208          
BLAST of EWM20523.1 vs. NCBI_GenBank
Match: gi|857975860|emb|CEO98039.1| (hypothetical protein PBRA_006152 [Plasmodiophora brassicae])

HSP 1 Score: 87.8113 bits (216), Expect = 2.440e-16
Identity = 64/208 (30.77%), Postives = 105/208 (50.48%), Query Frame = 0
Query:    4 SAPPSGGTAPSPIASVKEWYHNWCASTPFITRSTLHLLLALYALSWVVDLTAYLANIPYMSIYKLQLWRPFLSPFYTEGLLSVLFLCLSLGGMATTLEQAKGSTSFLCLMAAISFLTNFLFLLICLLLSVLQPSAL-YLSAGSFWIVVLGLLTVDCLASNLPTRQLFGLPCQIPSLYFPLLLFLLFSLFA-GPRLDLGLAVGVGYLVG 209
            +A  +GG  P  + S K+ Y  W   TP + R+ + + +A   LS V        N+PY ++ + Q+WR   + F    LLS +F   SL  +   LE AKGST  L    A S +  F+ +++  L  +L  S L +L  G FW +    + ++  AS   TRQ    P ++P+  +P++L +LF L + G  +D+ + + +G L G
Sbjct:   10 AADGAGGETPF-LRSAKDGYAKWYHQTPAMARALVFVGVAGSVLSLVGVDRVLGYNMPYYTVLRSQVWRVLTAGFVGRSLLSDVFAIFSLYQILLRLEPAKGSTFVLVTSLAASVVIQFVTVMLLTLAGILLSSMLFFLHGGGFWPLAFVFIALESQASVDATRQFLCFPVEVPTKAYPVVLAVLFFLLSGGSAIDIFVGLALGMLAG 216          
BLAST of EWM20523.1 vs. NCBI_GenBank
Match: gi|403333494|gb|EJY65848.1| (Rab GTPase 2b (macronuclear) [Oxytricha trifallax])

HSP 1 Score: 84.3445 bits (207), Expect = 1.145e-14
Identity = 74/274 (27.01%), Postives = 117/274 (42.70%), Query Frame = 0
Query:    7 PSGGTAPSPIASVKEWYHNWCASTPFITRSTLHLLLALYALSWVVDLTAYLANIPYMSIYKLQLWRPFLSPFYTEGLLSVLFLCLSLGGMATTLEQAKGSTSFLCLMAAISFLTNFLFLLICLLLSV-LQPSALYLSAGSFWIVVLGLLTVDCLASNLPTRQLFGLPCQIPSLYFPLLLFLLFSLFAGPRLDLGLAVGVGYLVGWGYLDVLLPPLACLTRWE-----------------EGRIGSWLGSRT-----GSSGSSASRPPANARELA 257
             +  ++P     VK  + N      FI  ST  + L+ +  + +    A+L   P M IY LQ+WR F  PF    LL +LF  +S    A   E+  G+          + L   LF++ C L ++ + P  + + +   W ++   +T++C  S    R L  LP QI S Y+P  L  +F++F G +LDL + + VGY+  +  LD           WE                 +G  G     RT      +  S AS+PPA  ++ A
Sbjct:    9 DASNSSPDMQTQVKNMWENVPTFCRFILISTCSIYLSSFIFAKI---PAFLVTQPLMIIYSLQIWRIFTGPFVHVQLLQLLFGLMSYIPTAMQQEKLDGTVKMAFRFFLNAVLIETLFVVACFLFAMFVNPQFMMMFSIGLWPILFCDITIECNKSPDLARGLCCLPIQIKSKYYPWALLAIFTMFFGLQLDLFVGLAVGYMHIYKALDKFELSTHKAKLWESKLPFKKYAPEPHFVAADGSAGLPTFVRTAPPQQNNQNSRASQPPAQTQQPA 279          
The following BLAST results are available for this feature:
BLAST of EWM20523.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100202|gb|EWM20523.1|0.000e+0100.00hypothetical protein Naga_100335g2 [Nannochloropsi... [more]
gi|553192779|ref|XP_005855643.1|4.489e-16897.58hypothetical protein NGA_0645800, partial [Nannoch... [more]
gi|219111855|ref|XP_002177679.1|3.263e-3234.40predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210529193|dbj|GAX12339.1|5.990e-2536.27hypothetical protein FisN_1Hh272 [Fistulifera sola... [more]
gi|223992547|ref|XP_002285957.1|9.067e-2337.10predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|298713038|emb|CBJ48813.1|1.055e-2233.70conserved unknown protein [Ectocarpus siliculosus][more]
gi|1210520173|dbj|GAX21056.1|4.193e-2036.14hypothetical protein FisN_1Lh272 [Fistulifera sola... [more]
gi|551665103|ref|XP_005835314.1|1.170e-1630.73hypothetical protein GUITHDRAFT_136846 [Guillardia... [more]
gi|857975860|emb|CEO98039.1|2.440e-1630.77hypothetical protein PBRA_006152 [Plasmodiophora b... [more]
gi|403333494|gb|EJY65848.1|1.145e-1427.01Rab GTPase 2b (macronuclear) [Oxytricha trifallax][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10179rna10179Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications