rna10179, rna10179 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna10179
Unique Name	rna10179
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	601
Alignment location	KK037264.1:60137..61708 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100335g2.5839.mrna
Orig protein id	gnl\|cribi\|Naga_100335g2.5839
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037264.1	supercontig	KK037264.1:60137..61708 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100335g2	gene9882	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna10179	rna10179-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20523.1	cds10148	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037264.1:60137..61708+
coding sequence from alignment at KK037264.1:60137..61708+

mRNA sequence

>rna10179 ID=rna10179|Name=rna10179|organism=Nannochloropsis gaditana|type=mRNA|length=601bp
TAACTACTGGGCAACCAATGCTCGCAGTGGAACATAAGGATGTAGAGTGT
GATGCTACTTAAGCCAGGATTTTCGTGCCACGACTCTTACAGCACGGAGG
ACTGTCACGGGCCCGCCTGTGTGAGCACAGCGGCCGCCCCCCTTTCGATG
TGCCGTGACAGGCTGTTCGACCTTAGGCACCCTTCCCACGGGAGCTTCTG
TCGCAGCATCAGATGCATTAGATGTCTACACATGCACCATGCGACAATTT
GGCTCTGAATGAGGCAACGGCCGCCTGAAATGTACTCCAGGCAGATTTTT
CAATAAATCACCCTCATCCCTCCCTCCCTCCTCCCCCCTCCTCCTCGTTG
CATTTCCGTAGAGCGAGATGTCTCTGCGCTTGGCTATCAAAGCCTCGCTG
GAGTCCACAGAAACTGTGAGTGGGGCGAGCGGAGGTCCTACCAAACCGCC
AGGCCCGTCCTCCCAGAGGCCTCAAGCAGGGCGACAAGTAAGCGGGGCGG
GAGGCACAAGCGCCGGGCGCCGGAAGTCTTGGCCGGAAGACCTCGAGTGC
GAGCGTGGACGATTCCAGCTTGAGCCTCTCCTCTGCTTCGTCCTCTCCTG
A

protein sequence of rna10179

>rna10179-protein ID=rna10179-protein|Name=rna10179|organism=Nannochloropsis gaditana|type=polypeptide|length=288bp
MASSAPPSGGTAPSPIASVKEWYHNWCASTPFITRSTLHLLLALYALSWV
VDLTAYLANIPYMSIYKLQLWRPFLSPFYTEGLLSVLFLCLSLGGMATTL
EQAKGSTSFLCLMAAISFLTNFLFLLICLLLSVLQPSALYLSAGSFWIVV
LGLLTVDCLASNLPTRQLFGLPCQIPSLYFPLLLFLLFSLFAGPRLDLGL
AVGVGYLVGWGYLDVLLPPLACLTRWEEGRIGSWLGSRTGSSGSSASRPP
ANARELAEARAAKFGGPNGPTASSSNENEEETATLLRR

mRNA from alignment at KK037264.1:60137..61708+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna10179 ID=rna10179|Name=rna10179|organism=Nannochloropsis gaditana|type=mRNA|length=1572bp|location=Sequence derived from alignment at KK037264.1:60137..61708+ (Nannochloropsis gaditana)
ATGGCCTCAAGTGCCCCGCCCTCTGGCGGcacggccccctctcccatcgC
CTCTGTGAAGGAATGGTACCACAATTGGTGCGCCTCCACACCCTTCATCA
CACGCAGCactcttcatctcctccttgccctctatGCACTCTCATGGGTC
GTGGATCTGACGGCATACCTGGCCAACATCCCGTACATGAGCATCTACAA
GCTGCAGCTCTGgcggcctttcctctctcccttttacACCGAGGGCTTGC
TCTCTGTGTTGTTCCTCTGCTTGTccctgggagggatggccACCACGCTC
GAGCAGGTGGGCAGGAGATGGGGTTGAGGGCATGCCTGGGAGGGCCTAAG
AAGAGGCAGAAATGCGGCGATCTTGTCACTATTGCTCAGTCTTACTTGAT
AGACTCACATTTGGTCCGTTTTTCCtgcatttcttccttttccccgccaT
ATTTTCGCTTCCCAGGCCAAGGGCAGTACCTCTTTCCTGTGTCTGATGGc
ggccatctccttcctcacaaacttcctcttcctcctgatctgtctcctcc
tctccgtgctTCAGCCCTCAGCGCTTTACCTCTCGGCAGGATCTTTCTGG
ATCGTCGTTCTTGGCCTTCTGACAGGTGTATATACCGCGAGGGAGCAAGA
CAGGGAGCGAGATGGGGGTTACTAGAGGGTACTAGAGGGTCTGTCGAAGG
GAAAGAGCTAGGcggaagggccgggggaggttTTCGGGCATGACGAGGAC
TTCTATTTCTTAGTCACTCCTATAGACCGAATTCAAGGATCTAGCAAGCT
GTGTGTGCAACATTGAtccaacccttcctccccccctcccccttttttcc
tttcccctctcccagtcGACTGCCTCGCCTCCAACCTCCCTACCCGGCAG
CTCTTCGGCCTGCCCTGTCAgatcccctccctctacttccccctcctcct
cttccttctgttctccctcttcgcgggcccccgcctcgaccTGGGTCTCG
CCGTGGGAGTAGGCTACCTGGTAGGATGGGGCTACCTGGACGtgttgctt
cctccccttgcctgtCTGACCCgatgggaagaggggcgaatTGGCTCGTG
GCTGGGGTCGAGGACGGGGTTTGTGTCTGCGGCAGcagcgaggggggcgg
aggcgtgGTTGCCAAcagtggtgggcgaggggggggggcggggcagaggg
agggagggagggaggcggggtgGCTGGGAGGGGTTTTGGCGTGGCGAGAA
ATCCACCCACGATACATAACGGAggtgggggcgagggggtggggggttCA
AAACtagcgggagggggggcagggggagctGCTTTTCAGGGAAGTGGGCA
AacgttggggggggggggcgggcgcgggcaggaggagcacggGGCTTGCT
AGGACTAGGGGGTGAtgggagcagcagcagtggtAGCAGTGCTTCCAGGC
CCCCCGCCAATGCTCGAGAGCTGGCAGAGGCACGAGCCGCGAAGTTCGGT
GGTCCGAACGGGCCCACGGCGTCCTCTTCGAAcgaaaacgaggaggagac
ggccacGTTACTCCGGCGGTAG

Coding sequence (CDS) from alignment at KK037264.1:60137..61708+

>rna10179 ID=rna10179|Name=rna10179|organism=Nannochloropsis gaditana|type=CDS|length=3468bp|location=Sequence derived from alignment at KK037264.1:60137..61708+ (Nannochloropsis gaditana)
ATGGCCTCAAGTGCCCCGCCCTCTGGCGGcacggccccctctcccatcgC
CTCTGTGAAGGAATGGTACCACAATTGGTGCGCCTCCACACCCTTCATCA
CACGCAGCactcttcatctcctccttgccctctatGCACTCTCATGGGTC
GTGGATCTGACGGCATACCTGGCCAACATCCCGTACATGAGCATCTACAA
GCTGCAGCTCTGgcggcctttcctctctcccttttacACCGAGGGCTTGC
TCTCTGTGTTGTTCCTCTGCTTGTccctgggagggatggccACCACGCTC
GAGCAGGCCAAGGGCAGTACCTCTTTCCTGTGTCTGATGGcggccatctc
cttcctcacaaacttcctcttcctcctgatctgtctcctcctctccgtgc
tTCAGCCCTCAGCGCTTTACCTCTCGGCAGGATCTTTCTGGATCGTCGTT
CTTGGCCTTCTGACAGtcGACTGCCTCGCCTCCAACCTCCCTACCCGGCA
GCTCTTCGGCCTGCCCTGTCAgatcccctccctctacttccccctcctcc
tcttccttctgttctccctcttcgcgggcccccgcctcgaccTGGGTCTC
GCCGTGGGAGTAGGCTACCTGGTAGGATGGGGCTACCTGGACGtgttgct
tcctccccttgcctgtCTGACCCgatgggaagaggggcgaatTGGCTCGT
GGCTGGGGTCGAGGACGGGcagcagtggtAGCAGTGCTTCCAGGCCCCCC
GCCAATGCTCGAGAGCTGGCAGAGGCACGAGCCGCGAAGTTCGGTGGTCC
GAACGGGCCCACGGCGTCCTCTTCGAAcgaaaacgaggaggagacggcca
cGTTACTCCGGCGGTAGATGGCCTCAAGTGCCCCGCCCTCTGGCGGcacg
gccccctctcccatcgCCTCTGTGAAGGAATGGTACCACAATTGGTGCGC
CTCCACACCCTTCATCACACGCAGCactcttcatctcctccttgccctct
atGCACTCTCATGGGTCGTGGATCTGACGGCATACCTGGCCAACATCCCG
TACATGAGCATCTACAAGCTGCAGCTCTGgcggcctttcctctctccctt
ttacACCGAGGGCTTGCTCTCTGTGTTGTTCCTCTGCTTGTccctgggag
ggatggccACCACGCTCGAGCAGGCCAAGGGCAGTACCTCTTTCCTGTGT
CTGATGGcggccatctccttcctcacaaacttcctcttcctcctgatctg
tctcctcctctccgtgctTCAGCCCTCAGCGCTTTACCTCTCGGCAGGAT
CTTTCTGGATCGTCGTTCTTGGCCTTCTGACAGtcGACTGCCTCGCCTCC
AACCTCCCTACCCGGCAGCTCTTCGGCCTGCCCTGTCAgatcccctccct
ctacttccccctcctcctcttccttctgttctccctcttcgcgggccccc
gcctcgaccTGGGTCTCGCCGTGGGAGTAGGCTACCTGGTAGGATGGGGC
TACCTGGACGtgttgcttcctccccttgcctgtCTGACCCgatgggaaga
ggggcgaatTGGCTCGTGGCTGGGGTCGAGGACGGGcagcagtggtAGCA
GTGCTTCCAGGCCCCCCGCCAATGCTCGAGAGCTGGCAGAGGCACGAGCC
GCGAAGTTCGGTGGTCCGAACGGGCCCACGGCGTCCTCTTCGAAcgaaaa
cgaggaggagacggccacGTTACTCCGGCGGTAGATGGCCTCAAGTGCCC
CGCCCTCTGGCGGcacggccccctctcccatcgCCTCTGTGAAGGAATGG
TACCACAATTGGTGCGCCTCCACACCCTTCATCACACGCAGCactcttca
tctcctccttgccctctatGCACTCTCATGGGTCGTGGATCTGACGGCAT
ACCTGGCCAACATCCCGTACATGAGCATCTACAAGCTGCAGCTCTGgcgg
cctttcctctctcccttttacACCGAGGGCTTGCTCTCTGTGTTGTTCCT
CTGCTTGTccctgggagggatggccACCACGCTCGAGCAGGCCAAGGGCA
GTACCTCTTTCCTGTGTCTGATGGcggccatctccttcctcacaaacttc
ctcttcctcctgatctgtctcctcctctccgtgctTCAGCCCTCAGCGCT
TTACCTCTCGGCAGGATCTTTCTGGATCGTCGTTCTTGGCCTTCTGACAG
tcGACTGCCTCGCCTCCAACCTCCCTACCCGGCAGCTCTTCGGCCTGCCC
TGTCAgatcccctccctctacttccccctcctcctcttccttctgttctc
cctcttcgcgggcccccgcctcgaccTGGGTCTCGCCGTGGGAGTAGGCT
ACCTGGTAGGATGGGGCTACCTGGACGtgttgcttcctccccttgcctgt
CTGACCCgatgggaagaggggcgaatTGGCTCGTGGCTGGGGTCGAGGAC
GGGcagcagtggtAGCAGTGCTTCCAGGCCCCCCGCCAATGCTCGAGAGC
TGGCAGAGGCACGAGCCGCGAAGTTCGGTGGTCCGAACGGGCCCACGGCG
TCCTCTTCGAAcgaaaacgaggaggagacggccacGTTACTCCGGCGGTA
GATGGCCTCAAGTGCCCCGCCCTCTGGCGGcacggccccctctcccatcg
CCTCTGTGAAGGAATGGTACCACAATTGGTGCGCCTCCACACCCTTCATC
ACACGCAGCactcttcatctcctccttgccctctatGCACTCTCATGGGT
CGTGGATCTGACGGCATACCTGGCCAACATCCCGTACATGAGCATCTACA
AGCTGCAGCTCTGgcggcctttcctctctcccttttacACCGAGGGCTTG
CTCTCTGTGTTGTTCCTCTGCTTGTccctgggagggatggccACCACGCT
CGAGCAGGCCAAGGGCAGTACCTCTTTCCTGTGTCTGATGGcggccatct
ccttcctcacaaacttcctcttcctcctgatctgtctcctcctctccgtg
ctTCAGCCCTCAGCGCTTTACCTCTCGGCAGGATCTTTCTGGATCGTCGT
TCTTGGCCTTCTGACAGtcGACTGCCTCGCCTCCAACCTCCCTACCCGGC
AGCTCTTCGGCCTGCCCTGTCAgatcccctccctctacttccccctcctc
ctcttccttctgttctccctcttcgcgggcccccgcctcgaccTGGGTCT
CGCCGTGGGAGTAGGCTACCTGGTAGGATGGGGCTACCTGGACGtgttgc
ttcctccccttgcctgtCTGACCCgatgggaagaggggcgaatTGGCTCG
TGGCTGGGGTCGAGGACGGGcagcagtggtAGCAGTGCTTCCAGGCCCCC
CGCCAATGCTCGAGAGCTGGCAGAGGCACGAGCCGCGAAGTTCGGTGGTC
CGAACGGGCCCACGGCGTCCTCTTCGAAcgaaaacgaggaggagacggcc
acGTTACTCCGGCGGTAG

Synonyms

Publications