rna10173, rna10173 (mRNA) Nannochloropsis gaditana

Overview
Namerna10173
Unique Namerna10173
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length519
Alignment locationKK037264.1:49206..50188 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100920g2.1616.mrna
Orig protein idgnl|cribi|Naga_100920g2.1616
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037264.1supercontigKK037264.1:49206..50188 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100920g2gene9876Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10173rna10173-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20531.1cds10142Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10173 ID=rna10173|Name=rna10173|organism=Nannochloropsis gaditana|type=mRNA|length=519bp
ATGAGAGAGGTTTTGTATCCTACGGACGAGCCCAGCCACTCCCATAGCGT
GTTTGTGCTCGAGCACCTCCTGCGCTCCCTCTGCGACACGGCTTTGTTGA
AGGACTCCAAATATTTTGCCTCCCCCATCGTAACGAAGGCTTTAGGCGGC
TTCCCAGGTGTGACCTTACGGCGATACGAATGCTCGGGCGCCTGCGTTGT
GGTCTTGGATAATGCTTTGGAGGAGCAAGGCCTGTCTGTCCGGTGTCGCT
TTGTTTTGCACACGGGCGATCGGAGCGATTGGGGCTCTACGCATAAGCCG
GCAGAGGCGCCAGAGTGGCGATTAGTAGGCCCAGGACACCGGGCTATAGT
CGGAGTATTGTCTTCCTCTTCCCAAATGGCGCAATTTGAGCTGGAGGCAA
TGGGAACGAGTGGGAGTTTTGTCATGGACAGGATGGAAGTAGAGGCGCTT
TCTCAAAACCAGATTCAGTGTGAAGATGTTGATAAAGCCAAAGGCATCTT
TGCTTGGGTAAAAATTTAG
back to top

protein sequence of rna10173

>rna10173-protein ID=rna10173-protein|Name=rna10173|organism=Nannochloropsis gaditana|type=polypeptide|length=169bp
MSTPRSNRHVETSDEQAEEECPSSVMIGMSNMAGVPADLASYVWDSREET
GDTSNATETRSARKSGAKAPIVSPDLASSSAVAPATAGSSSSMGTAEGEG
HKKKKKGPPRHHRPGRQPGARFALGVLTLINLLNYVDRWVVGQRGGGRTG
RARGGDEREARSMEGGGGG
back to top

mRNA from alignment at KK037264.1:49206..50188+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10173 ID=rna10173|Name=rna10173|organism=Nannochloropsis gaditana|type=mRNA|length=983bp|location=Sequence derived from alignment at KK037264.1:49206..50188+ (Nannochloropsis gaditana)
TACCATGAAAGGATTGTGAATTAAGTTGATCCTTCTTTGCCCTTCACAGG
CCGACCCGCAAGGGGGACAAACACTTTGTGCAAGCACCAGACGTGCTTCG
CAACAGTTGACCGGCTGCCCTCCATCTGCGCCTTGTTACCACAGCCATGT
CCACACCGCGCTCTAACCGACATGTAGAGACGTCTGATGAGCAAGCAGAG
GAAGAATGCCCGTCGTCGGTGATGATTGGCATGAGCAACATGGCGGGTGT
GCCCGCCGACTTAGCGTCCTACGTCTGGGattcgagggaggagaccgggG
ACACTTCTAACGCGACGGAGACGCGAAGTGCAAGGTAGGTTTGACGAAGC
TTGAGGGAGGGTAGATGGctgtcaaggaggaaagggaaagaggagtggtg
ggagggaaaggggggaacggagggagcggaaggagagagacgagGCATCA
ACAAAGCAAGAGATGCAGGGTAGATGTTAAGGTCGCATCGAAATAAATAA
ATGTACTGCATTGATTTAAAAATTGTTTTTAAAGATGCGGAGGATCAAGA
GCAAAGCATCGCGACGATCAGGATGGTGCTTTACGGGGAACCGTGGAAAG
GATACTAACGCCACCCGTACATAAAACATACCATGCGTCTGCAAATTCCC
CACGAATGCGCCCAGAAAAAGCGGTGCAAAGGCTCCCATCGTCAGTCCCG
ACCTcgcctcatcctccgccgtcgcccccgccacggctgggagcagcagc
agcatgggGACTgccgaaggagagggccacaagaagaagaagaaagggcc
CCCCCGGCATCATCGGCCGGGGCGCCAGCCCGGAGCGCGTTTCGCGTTGG
GGGTCTTGACACTGATCAACCTCTTGAACTATGTGGATCGGTGGGTGGtg
gggcagcgaggaggagggaggacgggtcgggcgcgaggaggcgatgagag
agaggcgaggagcatggagggaggaggaggagg
back to top

Coding sequence (CDS) from alignment at KK037264.1:49206..50188+

>rna10173 ID=rna10173|Name=rna10173|organism=Nannochloropsis gaditana|type=CDS|length=1012bp|location=Sequence derived from alignment at KK037264.1:49206..50188+ (Nannochloropsis gaditana)
ATGTCCACACCGCGCTCTAACCGACATGTAGAGACGTCTGATGAGCAAGC
AGAGGAAGAATGCCCGTCGTCGGTGATGATTGGCATGAGCAACATGGCGG
GTGTGCCCGCCGACTTAGCGTCCTACGTCTGGGattcgagggaggagacc
gggGACACTTCTAACGCGACGGAGACGCGAAGTGCAAGAAAAAGCGGTGC
AAAGGCTCCCATCGTCAGTCCCGACCTcgcctcatcctccgccgtcgccc
ccgccacggctgggagcagcagcagcatgggGACTgccgaaggagagggc
cacaagaagaagaagaaagggccCCCCCGGCATCATCGGCCGGGGCGCCA
GCCCGGAGCGCGTTTCGCGTTGGGGGTCTTGACACTGATCAACCTCTTGA
ACTATGTGGATCGGTGGGTGGtggggcagcgaggaggagggaggacgggt
cgggcgcgaggaggcgatgagagagaggcgaggagcatggagggaggagg
aggaggATGTCCACACCGCGCTCTAACCGACATGTAGAGACGTCTGATGA
GCAAGCAGAGGAAGAATGCCCGTCGTCGGTGATGATTGGCATGAGCAACA
TGGCGGGTGTGCCCGCCGACTTAGCGTCCTACGTCTGGGattcgagggag
gagaccgggGACACTTCTAACGCGACGGAGACGCGAAGTGCAAGAAAAAG
CGGTGCAAAGGCTCCCATCGTCAGTCCCGACCTcgcctcatcctccgccg
tcgcccccgccacggctgggagcagcagcagcatgggGACTgccgaagga
gagggccacaagaagaagaagaaagggccCCCCCGGCATCATCGGCCGGG
GCGCCAGCCCGGAGCGCGTTTCGCGTTGGGGGTCTTGACACTGATCAACC
TCTTGAACTATGTGGATCGGTGGGTGGtggggcagcgaggaggagggagg
acgggtcgggcgcgaggaggcgatgagagagaggcgaggagcatggaggg
aggaggaggagg
back to top
Synonyms
Publications