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Properties
| Property Name | Value |
|---|
| Product | Peptidase C2, calpain, catalytic domain protein |
| Orig transcript id | gnl|cribi|Naga_101712g1.8966.mrna |
| Orig protein id | gnl|cribi|Naga_101712g1.8966 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037264.1 | supercontig | KK037264.1:43705..45213 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna10171 ID=rna10171|Name=rna10171|organism=Nannochloropsis gaditana|type=mRNA|length=510bp
ATGTATCGTACTATGTACGCCCCACATGGATATGGGGAGGAAGAGCAGCG
TAAGAATGCTCCCGTGTTTGGCGCTACGGGTGCTTCCCCTGCTGTCTCCT
CCTCCCCGACCCTCCACTCTGCTTCCTCCACCTCCAACATTTCCTTCCTG
AATGGCTGGCGCCGCCTCTTTGTGGCGCCTCCTTCGCCCTCTTGGCGGGC
TTGCGACGTCCGTGTTGACGTTTCGGAAAACCTGCGGCGGATACACCTGA
AATTGTTGACGCTCTGTGGCTTGAACATCCCCTCGTGCTTGGCGATGAGG
GAAGTGAGGGATGTAACAATCGTAATGACGGCGCTACAACACTCCTCCGT
TGTCTCCCACTGCTCGCCGGCTGCTGAAAAACAACCTCGACGAGCCCTCC
TCCCTTCCTCCCCCCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCGCCTGTCCTCCGACATGCTCCACGAACTCCACTCCTTCCTTT
CTCTGCCTGA back to topprotein sequence of rna10171 >rna10171-protein ID=rna10171-protein|Name=rna10171|organism=Nannochloropsis gaditana|type=polypeptide|length=147bp
MHDLTSFPCEMIQFDTDGFDREAFWARLCSFQEAGFTMGASCPYSQEGLV
GCHAYSVLCVKELKDVAVGQQRKVLEYFAPRSVASVVSTRGRGAQRAGEG
DDGGKNDRAGVHLPSLPPSPPPFLTEDGVLRLVRLRNPWGCREWTGR back to topmRNA from alignment at KK037264.1:43705..45213+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna10171 ID=rna10171|Name=rna10171|organism=Nannochloropsis gaditana|type=mRNA|length=1509bp|location=Sequence derived from alignment at KK037264.1:43705..45213+ (Nannochloropsis gaditana)
cctcctaggCTCACGGCTCCTACCAAGCCATCTCGGGTGGGCATGTGGCT
GAGGCGATGCATGACctaacctccttcccctgcggtaggacgacgaggag
cgaggggggaaggaagaggggacatagaggaagcggggagagCATTAGTC
AAGAGAAAAAGATGTCCAAGGAACTGCAAAGCGGATTCGTGatctccctg
ccccccctcccctccttactccctcctgccttgtAGAAATGATCCAGTTT
GACACCGATGGGTTCGACCGGGAAGCGTTTTGGGCGCGTCTGTGCTCCTT
TCAGGTCTGTGGTAGGGGAGTGAGGaagtagggaggagggagtgaaggaa
gatAGATGGGGGCGAGGCAGCAAAGTAGGCAcaacgtggaggagaaagta
AGGGTGAAAGATAAAGGGAAATTCCCAGCGTAAGTGAAAATGCTGGATGT
CCctcactctcttcctcccttatTCCCTCCTGATCCCTCTTGCCCCGTTC
CTTTCACTGGCTTCCAGGAGGCGGGCTTCACCATGGGGGCGTCCTGCCCG
TACTCTCAGGAGGGATTGGTCGGCTGTCATGCCTACAGTGTACTTTGTGT
TAAGGTGGGtgcaagggaggggtgaggaaggggggaagggagggagggaa
gggcttTTCGCGGATCTAATAACCGTGACGCAGCCAATTATTATACTTCG
TCCATTTCCTGTGCTTATTATTGCTGCCCGATGGAAAAGACCGACggatg
aggcggaggggaagatcTTTTCAGGACGCTTGGCTGGAAAGGTTTAGGGT
TCGcattagggttagggttccGATTAGGGCCAGGGTTAAGGTTAGGGTtg
gggttagggttaggattagggttaggattagggCTCGGGGTAGGGAGGTT
AGGGTTTGGGTAAGGGTTCGGGTGACACAGGAGGACTGGGGAGGCAGCAC
GACCGCGCTTTGTCCATTGGTCAGCGACTGCCGGCTGATATTTATCTCCG
ACTGTTCTCCTCTTGCCTCTGCAACCCATTCTTCGCTCGGTAttttcttc
tcgtccttccctccttccctccctccctttcttccttgccacgtcctcct
cagGAACTGAAAGACGTCGCGGTCGGTCAGCAGCGGAAGGTGCTGGAGTA
CTTTGCTCCTCGAAGCGTTGCAAGCGTGGTGTCgaccagggggagggggg
cacaaagggcgggagaaggagacgatggtGGCAAGAATGACAGGGCAGGT
GCGTGGTTGGTTTCCCCCCTTGGTCCCATGGACTTCATAGCCGAATCGGG
CATTATCCACACattccccgccttctttcctcctcccctcccgccctccc
tcccgccgtccttGTCACCATATCGCGGCCCCGGTGCCGACAGGCGTCCa
tctaccctccctccccccctccccccctcctttcctcacgGAGGATGGTG
TCCTCCGCTTGGTCCGGCTTCGCAACCCTTGGGGCTGCCGGGAGTGGACC
GGCAGGTAA back to topCoding sequence (CDS) from alignment at KK037264.1:43705..45213+ >rna10171 ID=rna10171|Name=rna10171|organism=Nannochloropsis gaditana|type=CDS|length=2220bp|location=Sequence derived from alignment at KK037264.1:43705..45213+ (Nannochloropsis gaditana)
ATGCATGACctaacctccttcccctgcgAAATGATCCAGTTTGACACCGA
TGGGTTCGACCGGGAAGCGTTTTGGGCGCGTCTGTGCTCCTTTCAGGAGG
CGGGCTTCACCATGGGGGCGTCCTGCCCGTACTCTCAGGAGGGATTGGTC
GGCTGTCATGCCTACAGTGTACTTTGTGTTAAGGAACTGAAAGACGTCGC
GGTCGGTCAGCAGCGGAAGGTGCTGGAGTACTTTGCTCCTCGAAGCGTTG
CAAGCGTGGTGTCgaccagggggaggggggcacaaagggcgggagaagga
gacgatggtGGCAAGAATGACAGGGCAGGCGTCCatctaccctccctccc
cccctccccccctcctttcctcacgGAGGATGGTGTCCTCCGCTTGGTCC
GGCTTCGCAACCCTTGGGGCTGCCGGGAGTGGACCGGCAGGTAAATGCAT
GACctaacctccttcccctgcgAAATGATCCAGTTTGACACCGATGGGTT
CGACCGGGAAGCGTTTTGGGCGCGTCTGTGCTCCTTTCAGGAGGCGGGCT
TCACCATGGGGGCGTCCTGCCCGTACTCTCAGGAGGGATTGGTCGGCTGT
CATGCCTACAGTGTACTTTGTGTTAAGGAACTGAAAGACGTCGCGGTCGG
TCAGCAGCGGAAGGTGCTGGAGTACTTTGCTCCTCGAAGCGTTGCAAGCG
TGGTGTCgaccagggggaggggggcacaaagggcgggagaaggagacgat
ggtGGCAAGAATGACAGGGCAGGCGTCCatctaccctccctccccccctc
cccccctcctttcctcacgGAGGATGGTGTCCTCCGCTTGGTCCGGCTTC
GCAACCCTTGGGGCTGCCGGGAGTGGACCGGCAGGTAAATGCATGACcta
acctccttcccctgcgAAATGATCCAGTTTGACACCGATGGGTTCGACCG
GGAAGCGTTTTGGGCGCGTCTGTGCTCCTTTCAGGAGGCGGGCTTCACCA
TGGGGGCGTCCTGCCCGTACTCTCAGGAGGGATTGGTCGGCTGTCATGCC
TACAGTGTACTTTGTGTTAAGGAACTGAAAGACGTCGCGGTCGGTCAGCA
GCGGAAGGTGCTGGAGTACTTTGCTCCTCGAAGCGTTGCAAGCGTGGTGT
CgaccagggggaggggggcacaaagggcgggagaaggagacgatggtGGC
AAGAATGACAGGGCAGGCGTCCatctaccctccctccccccctccccccc
tcctttcctcacgGAGGATGGTGTCCTCCGCTTGGTCCGGCTTCGCAACC
CTTGGGGCTGCCGGGAGTGGACCGGCAGGTAAATGCATGACctaacctcc
ttcccctgcgAAATGATCCAGTTTGACACCGATGGGTTCGACCGGGAAGC
GTTTTGGGCGCGTCTGTGCTCCTTTCAGGAGGCGGGCTTCACCATGGGGG
CGTCCTGCCCGTACTCTCAGGAGGGATTGGTCGGCTGTCATGCCTACAGT
GTACTTTGTGTTAAGGAACTGAAAGACGTCGCGGTCGGTCAGCAGCGGAA
GGTGCTGGAGTACTTTGCTCCTCGAAGCGTTGCAAGCGTGGTGTCgacca
gggggaggggggcacaaagggcgggagaaggagacgatggtGGCAAGAAT
GACAGGGCAGGCGTCCatctaccctccctccccccctccccccctccttt
cctcacgGAGGATGGTGTCCTCCGCTTGGTCCGGCTTCGCAACCCTTGGG
GCTGCCGGGAGTGGACCGGCAGGTAAATGCATGACctaacctccttcccc
tgcgAAATGATCCAGTTTGACACCGATGGGTTCGACCGGGAAGCGTTTTG
GGCGCGTCTGTGCTCCTTTCAGGAGGCGGGCTTCACCATGGGGGCGTCCT
GCCCGTACTCTCAGGAGGGATTGGTCGGCTGTCATGCCTACAGTGTACTT
TGTGTTAAGGAACTGAAAGACGTCGCGGTCGGTCAGCAGCGGAAGGTGCT
GGAGTACTTTGCTCCTCGAAGCGTTGCAAGCGTGGTGTCgaccaggggga
ggggggcacaaagggcgggagaaggagacgatggtGGCAAGAATGACAGG
GCAGGCGTCCatctaccctccctccccccctccccccctcctttcctcac
gGAGGATGGTGTCCTCCGCTTGGTCCGGCTTCGCAACCCTTGGGGCTGCC
GGGAGTGGACCGGCAGGTAA back to top
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