EWM20538.1, cds10135 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM20538.1 vs. NCBI_GenBank
Match: gi|585100227|gb|EWM20538.1| (ccr4 carbon catabolite repression 4, partial [Nannochloropsis gaditana]) HSP 1 Score: 412.535 bits (1059), Expect = 1.348e-145 Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 0 Query: 1 MSLPGNPIKSATAVLSSSSSSLSSPLLPRSFVPLPNTWGLSDEGVKQLPITRPKEGRASEEEADRRQESPLYTLIQWNVMADAFSSPSLYTRVDPPGLMAWLYRREKVLEEVTRWNPDVVTLQEIDHYFDDLLPAFTSLGYTGAFVRKPLNMDGTCPPSLPPSLPPSLPPSFFFCFPSSIPRMPIVLLPFRFPLFTLCVPSQALPPFL 208 MSLPGNPIKSATAVLSSSSSSLSSPLLPRSFVPLPNTWGLSDEGVKQLPITRPKEGRASEEEADRRQESPLYTLIQWNVMADAFSSPSLYTRVDPPGLMAWLYRREKVLEEVTRWNPDVVTLQEIDHYFDDLLPAFTSLGYTGAFVRKPLNMDGTCPPSLPPSLPPSLPPSFFFCFPSSIPRMPIVLLPFRFPLFTLCVPSQALPPFL Sbjct: 1 MSLPGNPIKSATAVLSSSSSSLSSPLLPRSFVPLPNTWGLSDEGVKQLPITRPKEGRASEEEADRRQESPLYTLIQWNVMADAFSSPSLYTRVDPPGLMAWLYRREKVLEEVTRWNPDVVTLQEIDHYFDDLLPAFTSLGYTGAFVRKPLNMDGTCPPSLPPSLPPSLPPSFFFCFPSSIPRMPIVLLPFRFPLFTLCVPSQALPPFL 208
BLAST of EWM20538.1 vs. NCBI_GenBank
Match: gi|260828432|ref|XP_002609167.1| (hypothetical protein BRAFLDRAFT_92542 [Branchiostoma floridae] >gi|229294522|gb|EEN65177.1| hypothetical protein BRAFLDRAFT_92542 [Branchiostoma floridae]) HSP 1 Score: 80.8777 bits (198), Expect = 2.725e-14 Identity = 55/171 (32.16%), Postives = 77/171 (45.03%), Query Frame = 0 Query: 1 MSLPGNPIKSATAVLSSSSSSLSS---------PLLPRSFVPLPNTWGLSDEGVKQLPITRPKEGRASEEEADRRQESPLYTLIQWNVMADAFSSPSLYTRVDPPGLMAWLYRREKVLEEVTRWNPDVVTLQEIDHYFDDLLPAFTSLGYTGAFVRKPLNMDGTCPPSLPP 162 +S P +PI AT+ L+S L S PLL RSFV + G EG ++ ++QWN++A A S PP + W R+ ++LEE+ ++ DV+ QE+DHY D L PA SLGY G F KP + CP + P Sbjct: 90 VSTPQHPIVMATSSLTSKDKLLESCEKALKDQPPLLKRSFVSIAGVEGEVREG-------------------------NVFRVMQWNILAQALSQADDSFVRCPPAALNWDVRKFRILEEIRTYDSDVLCFQEVDHYHDFLEPALKSLGYRGLFYPKPDSPALYCPNNNGP 235
BLAST of EWM20538.1 vs. NCBI_GenBank
Match: gi|813219776|ref|XP_012211265.1| (hypothetical protein SPRG_16592, partial [Saprolegnia parasitica CBS 223.65] >gi|641523043|gb|KDO18022.1| hypothetical protein SPRG_16592, partial [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 73.9442 bits (180), Expect = 1.589e-13 Identity = 36/86 (41.86%), Postives = 56/86 (65.12%), Query Frame = 0 Query: 68 ESPLYTLIQWNVMADAFSS----PSLYTRVDPPGLMAWLYRREKVLEEVTRWNPDVVTLQEIDHYFDDLLPAFTSLGYTGAFVRKP 149 ++P +T++Q+NV+AD S +T + PPG +AW +RR+ +L+E+ R+ PDVV L+E+DH+ D P + GYTG F KP Sbjct: 17 DTPPFTILQFNVLADGLSGLRDDHGGFT-LAPPGSLAWAHRRQPLLDEILRFAPDVVCLEEVDHFHDWFEPQLAAHGYTGLFAPKP 101
BLAST of EWM20538.1 vs. NCBI_GenBank
Match: gi|1191054637|ref|XP_020905313.1| (nocturnin-like [Exaiptasia pallida] >gi|999986684|gb|KXJ25815.1| Nocturnin [Exaiptasia pallida]) HSP 1 Score: 77.411 bits (189), Expect = 2.156e-13 Identity = 36/87 (41.38%), Postives = 53/87 (60.92%), Query Frame = 0 Query: 62 EADRRQESPLYTLIQWNVMADAFS-SPSLYTRVD-PPGLMAWLYRREKVLEEVTRWNPDVVTLQEIDHYFDDLLPAFTSLGYTGAFV 146 +AD E + ++QWNV+ADA S S S + + P + W R+ + L+E+ +NPD++ LQE+DHYFD P +GY GAFV Sbjct: 39 DADSCSEKXEFRVMQWNVLADALSESSSTHNFIKCPTQALTWSNRKHRSLQELLTYNPDIICLQEVDHYFDFYQPQLKKVGYEGAFV 125
BLAST of EWM20538.1 vs. NCBI_GenBank
Match: gi|669136898|ref|XP_008604017.1| (hypothetical protein SDRG_00323 [Saprolegnia diclina VS20] >gi|530744352|gb|EQC42594.1| hypothetical protein SDRG_00323 [Saprolegnia diclina VS20]) HSP 1 Score: 76.2554 bits (186), Expect = 2.193e-13 Identity = 36/89 (40.45%), Postives = 56/89 (62.92%), Query Frame = 0 Query: 68 ESPLYTLIQWNVMADAFSSPSLYTRVD-------PPGLMAWLYRREKVLEEVTRWNPDVVTLQEIDHYFDDLLPAFTSLGYTGAFVRKP 149 ++P +T++Q+NV+AD S R D PPG +AW +RR+ +L+E+ R+ PD+V L+E+DH++D P + GYTG F KP Sbjct: 17 DTPSFTIVQFNVLADGLSG----LRDDLGGFTLAPPGSLAWAHRRQPLLDEILRFAPDIVCLEEVDHFYDWFEPQLAAQGYTGVFAPKP 101
BLAST of EWM20538.1 vs. NCBI_GenBank
Match: gi|1004142599|gb|KXZ50586.1| (hypothetical protein GPECTOR_16g761 [Gonium pectorale]) HSP 1 Score: 75.0998 bits (183), Expect = 2.293e-12 Identity = 39/109 (35.78%), Postives = 58/109 (53.21%), Query Frame = 0 Query: 65 RRQESPLYTLIQWNVMADAFSSPSLYTRVDPPGLMAWLYRREKVLEEVTRWNPDVVTLQEIDHYFDDLLPAFTSLGYTGAFVRKPLNMDGTCPPSLPPSLPPSLPPSFF 173 R+ + ++QWNV+AD + + RV PPG + W YRR +L+E+ N D++ LQE++H FD+L LGY GAF K + P+L PP F+ Sbjct: 34 RKPAGAHFKVLQWNVLADGLAQNGDFCRV-PPGCLEWEYRRPLLLQEILEANADIICLQELNH-FDELRQVLAELGYDGAFREKHAS------PALKYEYPPDGMAVFY 134
BLAST of EWM20538.1 vs. NCBI_GenBank
Match: gi|1126178417|ref|XP_019621565.1| (PREDICTED: nocturnin-like [Branchiostoma belcheri]) HSP 1 Score: 74.7146 bits (182), Expect = 2.376e-12 Identity = 51/164 (31.10%), Postives = 76/164 (46.34%), Query Frame = 0 Query: 1 MSLPGNPIKSATAVLSSSSSSLSSPLLPRSFVPLPNTWGLSDEGVKQLP--ITRPKEGRASEEEADRRQESPLYTLIQWNVMADAFSSPSLYTRVDPPGLMAWLYRREKVLEEVTRWNPDVVTLQEIDHYFDDLLPAFTSLGYTGAFVRKPLNMDGTCPPSLPP 162 ++ P +P+ AT+ LSS L S + +K P + RP A E R + ++ ++QWN++A A S PP + W R+ ++LEE+ + DV+ QE+DHY D L PA SLGY G F KP + CP + P Sbjct: 16 LTTPRHPVVMATSSLSSKDKLLGS----------------CKQALKDQPPLLKRPLVSVAGAEGGGR--QGNVFRVMQWNILAQALSQADDSFVRCPPAALNWDVRKFRILEEILAYGADVLCFQEVDHYHDFLEPALKSLGYHGLFYPKPDSPTLYCPNNNGP 161
BLAST of EWM20538.1 vs. NCBI_GenBank
Match: gi|813185457|ref|XP_012206900.1| (hypothetical protein SPRG_11328 [Saprolegnia parasitica CBS 223.65] >gi|641528132|gb|KDO22376.1| hypothetical protein SPRG_11328 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 73.9442 bits (180), Expect = 3.509e-12 Identity = 35/86 (40.70%), Postives = 56/86 (65.12%), Query Frame = 0 Query: 68 ESPLYTLIQWNVMADAFSS----PSLYTRVDPPGLMAWLYRREKVLEEVTRWNPDVVTLQEIDHYFDDLLPAFTSLGYTGAFVRKP 149 ++P +T++Q+NV+AD S +T + PPG +AW +RR+ +L+E+ R+ PD+V L+E+DH+ D P + GYTG F KP Sbjct: 17 DTPSFTILQFNVLADGLSGLRDDHGGFT-LAPPGSLAWAHRRQPLLDEILRFAPDIVCLEEVDHFHDWFEPQLAAHGYTGLFAPKP 101
BLAST of EWM20538.1 vs. NCBI_GenBank
Match: gi|617477279|ref|XP_007576173.1| (PREDICTED: nocturnin isoform X1 [Poecilia formosa]) HSP 1 Score: 74.3294 bits (181), Expect = 5.161e-12 Identity = 32/84 (38.10%), Postives = 48/84 (57.14%), Query Frame = 0 Query: 66 RQESPLYTLIQWNVMADAFSSPSLYTRVDPPGLMAWLYRREKVLEEVTRWNPDVVTLQEIDHYFDDLLPAFTSLGYTGAFVRKP 149 Q +P ++QWN++A A P ++W R+ ++LEE+ + PD+V LQE+DHY+D P SLGY G F+ KP Sbjct: 145 HQHNPSIRVLQWNILAQALGEGKDSFIRCPLEALSWHERKYQILEEILTYRPDIVCLQEVDHYYDTFQPVMASLGYHGNFLPKP 228
BLAST of EWM20538.1 vs. NCBI_GenBank
Match: gi|961940675|ref|XP_014913531.1| (PREDICTED: nocturnin isoform X1 [Poecilia latipinna]) HSP 1 Score: 74.3294 bits (181), Expect = 5.354e-12 Identity = 32/84 (38.10%), Postives = 48/84 (57.14%), Query Frame = 0 Query: 66 RQESPLYTLIQWNVMADAFSSPSLYTRVDPPGLMAWLYRREKVLEEVTRWNPDVVTLQEIDHYFDDLLPAFTSLGYTGAFVRKP 149 Q +P ++QWN++A A P ++W R+ ++LEE+ + PD+V LQE+DHY+D P SLGY G F+ KP Sbjct: 144 HQHNPSIRVLQWNILAQALGEGKDSFIRCPLEALSWHERKYQILEEILTYRPDIVCLQEVDHYYDTFQPVMASLGYHGNFLPKP 227 The following BLAST results are available for this feature:
BLAST of EWM20538.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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