EWM20538.1, cds10135 (CDS) Nannochloropsis gaditana

Overview
NameEWM20538.1
Unique Namecds10135
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037264.1:34318..34545 +
Alignment locationKK037264.1:34759..34899 +
Alignment locationKK037264.1:35044..35299 +

Link to JBrowse

Properties
Property NameValue
End range.
End range35299
Protein idEWM20538.1
Productccr4 carbon catabolite repression 4
Partialtrue
Orig transcript idgnl|cribi|Naga_101127g3.9865.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037264.1supercontigKK037264.1:34318..34545 +
KK037264.1supercontigKK037264.1:34759..34899 +
KK037264.1supercontigKK037264.1:35044..35299 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Homology
BLAST of EWM20538.1 vs. NCBI_GenBank
Match: gi|585100227|gb|EWM20538.1| (ccr4 carbon catabolite repression 4, partial [Nannochloropsis gaditana])

HSP 1 Score: 412.535 bits (1059), Expect = 1.348e-145
Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 0
Query:    1 MSLPGNPIKSATAVLSSSSSSLSSPLLPRSFVPLPNTWGLSDEGVKQLPITRPKEGRASEEEADRRQESPLYTLIQWNVMADAFSSPSLYTRVDPPGLMAWLYRREKVLEEVTRWNPDVVTLQEIDHYFDDLLPAFTSLGYTGAFVRKPLNMDGTCPPSLPPSLPPSLPPSFFFCFPSSIPRMPIVLLPFRFPLFTLCVPSQALPPFL 208
            MSLPGNPIKSATAVLSSSSSSLSSPLLPRSFVPLPNTWGLSDEGVKQLPITRPKEGRASEEEADRRQESPLYTLIQWNVMADAFSSPSLYTRVDPPGLMAWLYRREKVLEEVTRWNPDVVTLQEIDHYFDDLLPAFTSLGYTGAFVRKPLNMDGTCPPSLPPSLPPSLPPSFFFCFPSSIPRMPIVLLPFRFPLFTLCVPSQALPPFL
Sbjct:    1 MSLPGNPIKSATAVLSSSSSSLSSPLLPRSFVPLPNTWGLSDEGVKQLPITRPKEGRASEEEADRRQESPLYTLIQWNVMADAFSSPSLYTRVDPPGLMAWLYRREKVLEEVTRWNPDVVTLQEIDHYFDDLLPAFTSLGYTGAFVRKPLNMDGTCPPSLPPSLPPSLPPSFFFCFPSSIPRMPIVLLPFRFPLFTLCVPSQALPPFL 208          
BLAST of EWM20538.1 vs. NCBI_GenBank
Match: gi|260828432|ref|XP_002609167.1| (hypothetical protein BRAFLDRAFT_92542 [Branchiostoma floridae] >gi|229294522|gb|EEN65177.1| hypothetical protein BRAFLDRAFT_92542 [Branchiostoma floridae])

HSP 1 Score: 80.8777 bits (198), Expect = 2.725e-14
Identity = 55/171 (32.16%), Postives = 77/171 (45.03%), Query Frame = 0
Query:    1 MSLPGNPIKSATAVLSSSSSSLSS---------PLLPRSFVPLPNTWGLSDEGVKQLPITRPKEGRASEEEADRRQESPLYTLIQWNVMADAFSSPSLYTRVDPPGLMAWLYRREKVLEEVTRWNPDVVTLQEIDHYFDDLLPAFTSLGYTGAFVRKPLNMDGTCPPSLPP 162
            +S P +PI  AT+ L+S    L S         PLL RSFV +    G   EG                          ++ ++QWN++A A S         PP  + W  R+ ++LEE+  ++ DV+  QE+DHY D L PA  SLGY G F  KP +    CP +  P
Sbjct:   90 VSTPQHPIVMATSSLTSKDKLLESCEKALKDQPPLLKRSFVSIAGVEGEVREG-------------------------NVFRVMQWNILAQALSQADDSFVRCPPAALNWDVRKFRILEEIRTYDSDVLCFQEVDHYHDFLEPALKSLGYRGLFYPKPDSPALYCPNNNGP 235          
BLAST of EWM20538.1 vs. NCBI_GenBank
Match: gi|813219776|ref|XP_012211265.1| (hypothetical protein SPRG_16592, partial [Saprolegnia parasitica CBS 223.65] >gi|641523043|gb|KDO18022.1| hypothetical protein SPRG_16592, partial [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 73.9442 bits (180), Expect = 1.589e-13
Identity = 36/86 (41.86%), Postives = 56/86 (65.12%), Query Frame = 0
Query:   68 ESPLYTLIQWNVMADAFSS----PSLYTRVDPPGLMAWLYRREKVLEEVTRWNPDVVTLQEIDHYFDDLLPAFTSLGYTGAFVRKP 149
            ++P +T++Q+NV+AD  S        +T + PPG +AW +RR+ +L+E+ R+ PDVV L+E+DH+ D   P   + GYTG F  KP
Sbjct:   17 DTPPFTILQFNVLADGLSGLRDDHGGFT-LAPPGSLAWAHRRQPLLDEILRFAPDVVCLEEVDHFHDWFEPQLAAHGYTGLFAPKP 101          
BLAST of EWM20538.1 vs. NCBI_GenBank
Match: gi|1191054637|ref|XP_020905313.1| (nocturnin-like [Exaiptasia pallida] >gi|999986684|gb|KXJ25815.1| Nocturnin [Exaiptasia pallida])

HSP 1 Score: 77.411 bits (189), Expect = 2.156e-13
Identity = 36/87 (41.38%), Postives = 53/87 (60.92%), Query Frame = 0
Query:   62 EADRRQESPLYTLIQWNVMADAFS-SPSLYTRVD-PPGLMAWLYRREKVLEEVTRWNPDVVTLQEIDHYFDDLLPAFTSLGYTGAFV 146
            +AD   E   + ++QWNV+ADA S S S +  +  P   + W  R+ + L+E+  +NPD++ LQE+DHYFD   P    +GY GAFV
Sbjct:   39 DADSCSEKXEFRVMQWNVLADALSESSSTHNFIKCPTQALTWSNRKHRSLQELLTYNPDIICLQEVDHYFDFYQPQLKKVGYEGAFV 125          
BLAST of EWM20538.1 vs. NCBI_GenBank
Match: gi|669136898|ref|XP_008604017.1| (hypothetical protein SDRG_00323 [Saprolegnia diclina VS20] >gi|530744352|gb|EQC42594.1| hypothetical protein SDRG_00323 [Saprolegnia diclina VS20])

HSP 1 Score: 76.2554 bits (186), Expect = 2.193e-13
Identity = 36/89 (40.45%), Postives = 56/89 (62.92%), Query Frame = 0
Query:   68 ESPLYTLIQWNVMADAFSSPSLYTRVD-------PPGLMAWLYRREKVLEEVTRWNPDVVTLQEIDHYFDDLLPAFTSLGYTGAFVRKP 149
            ++P +T++Q+NV+AD  S      R D       PPG +AW +RR+ +L+E+ R+ PD+V L+E+DH++D   P   + GYTG F  KP
Sbjct:   17 DTPSFTIVQFNVLADGLSG----LRDDLGGFTLAPPGSLAWAHRRQPLLDEILRFAPDIVCLEEVDHFYDWFEPQLAAQGYTGVFAPKP 101          
BLAST of EWM20538.1 vs. NCBI_GenBank
Match: gi|1004142599|gb|KXZ50586.1| (hypothetical protein GPECTOR_16g761 [Gonium pectorale])

HSP 1 Score: 75.0998 bits (183), Expect = 2.293e-12
Identity = 39/109 (35.78%), Postives = 58/109 (53.21%), Query Frame = 0
Query:   65 RRQESPLYTLIQWNVMADAFSSPSLYTRVDPPGLMAWLYRREKVLEEVTRWNPDVVTLQEIDHYFDDLLPAFTSLGYTGAFVRKPLNMDGTCPPSLPPSLPPSLPPSFF 173
            R+     + ++QWNV+AD  +    + RV PPG + W YRR  +L+E+   N D++ LQE++H FD+L      LGY GAF  K  +      P+L    PP     F+
Sbjct:   34 RKPAGAHFKVLQWNVLADGLAQNGDFCRV-PPGCLEWEYRRPLLLQEILEANADIICLQELNH-FDELRQVLAELGYDGAFREKHAS------PALKYEYPPDGMAVFY 134          
BLAST of EWM20538.1 vs. NCBI_GenBank
Match: gi|1126178417|ref|XP_019621565.1| (PREDICTED: nocturnin-like [Branchiostoma belcheri])

HSP 1 Score: 74.7146 bits (182), Expect = 2.376e-12
Identity = 51/164 (31.10%), Postives = 76/164 (46.34%), Query Frame = 0
Query:    1 MSLPGNPIKSATAVLSSSSSSLSSPLLPRSFVPLPNTWGLSDEGVKQLP--ITRPKEGRASEEEADRRQESPLYTLIQWNVMADAFSSPSLYTRVDPPGLMAWLYRREKVLEEVTRWNPDVVTLQEIDHYFDDLLPAFTSLGYTGAFVRKPLNMDGTCPPSLPP 162
            ++ P +P+  AT+ LSS    L S                  + +K  P  + RP    A  E   R  +  ++ ++QWN++A A S         PP  + W  R+ ++LEE+  +  DV+  QE+DHY D L PA  SLGY G F  KP +    CP +  P
Sbjct:   16 LTTPRHPVVMATSSLSSKDKLLGS----------------CKQALKDQPPLLKRPLVSVAGAEGGGR--QGNVFRVMQWNILAQALSQADDSFVRCPPAALNWDVRKFRILEEILAYGADVLCFQEVDHYHDFLEPALKSLGYHGLFYPKPDSPTLYCPNNNGP 161          
BLAST of EWM20538.1 vs. NCBI_GenBank
Match: gi|813185457|ref|XP_012206900.1| (hypothetical protein SPRG_11328 [Saprolegnia parasitica CBS 223.65] >gi|641528132|gb|KDO22376.1| hypothetical protein SPRG_11328 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 73.9442 bits (180), Expect = 3.509e-12
Identity = 35/86 (40.70%), Postives = 56/86 (65.12%), Query Frame = 0
Query:   68 ESPLYTLIQWNVMADAFSS----PSLYTRVDPPGLMAWLYRREKVLEEVTRWNPDVVTLQEIDHYFDDLLPAFTSLGYTGAFVRKP 149
            ++P +T++Q+NV+AD  S        +T + PPG +AW +RR+ +L+E+ R+ PD+V L+E+DH+ D   P   + GYTG F  KP
Sbjct:   17 DTPSFTILQFNVLADGLSGLRDDHGGFT-LAPPGSLAWAHRRQPLLDEILRFAPDIVCLEEVDHFHDWFEPQLAAHGYTGLFAPKP 101          
BLAST of EWM20538.1 vs. NCBI_GenBank
Match: gi|617477279|ref|XP_007576173.1| (PREDICTED: nocturnin isoform X1 [Poecilia formosa])

HSP 1 Score: 74.3294 bits (181), Expect = 5.161e-12
Identity = 32/84 (38.10%), Postives = 48/84 (57.14%), Query Frame = 0
Query:   66 RQESPLYTLIQWNVMADAFSSPSLYTRVDPPGLMAWLYRREKVLEEVTRWNPDVVTLQEIDHYFDDLLPAFTSLGYTGAFVRKP 149
             Q +P   ++QWN++A A           P   ++W  R+ ++LEE+  + PD+V LQE+DHY+D   P   SLGY G F+ KP
Sbjct:  145 HQHNPSIRVLQWNILAQALGEGKDSFIRCPLEALSWHERKYQILEEILTYRPDIVCLQEVDHYYDTFQPVMASLGYHGNFLPKP 228          
BLAST of EWM20538.1 vs. NCBI_GenBank
Match: gi|961940675|ref|XP_014913531.1| (PREDICTED: nocturnin isoform X1 [Poecilia latipinna])

HSP 1 Score: 74.3294 bits (181), Expect = 5.354e-12
Identity = 32/84 (38.10%), Postives = 48/84 (57.14%), Query Frame = 0
Query:   66 RQESPLYTLIQWNVMADAFSSPSLYTRVDPPGLMAWLYRREKVLEEVTRWNPDVVTLQEIDHYFDDLLPAFTSLGYTGAFVRKP 149
             Q +P   ++QWN++A A           P   ++W  R+ ++LEE+  + PD+V LQE+DHY+D   P   SLGY G F+ KP
Sbjct:  144 HQHNPSIRVLQWNILAQALGEGKDSFIRCPLEALSWHERKYQILEEILTYRPDIVCLQEVDHYYDTFQPVMASLGYHGNFLPKP 227          
The following BLAST results are available for this feature:
BLAST of EWM20538.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100227|gb|EWM20538.1|1.348e-145100.00ccr4 carbon catabolite repression 4, partial [Nann... [more]
gi|260828432|ref|XP_002609167.1|2.725e-1432.16hypothetical protein BRAFLDRAFT_92542 [Branchiosto... [more]
gi|813219776|ref|XP_012211265.1|1.589e-1341.86hypothetical protein SPRG_16592, partial [Saproleg... [more]
gi|1191054637|ref|XP_020905313.1|2.156e-1341.38nocturnin-like [Exaiptasia pallida] >gi|999986684|... [more]
gi|669136898|ref|XP_008604017.1|2.193e-1340.45hypothetical protein SDRG_00323 [Saprolegnia dicli... [more]
gi|1004142599|gb|KXZ50586.1|2.293e-1235.78hypothetical protein GPECTOR_16g761 [Gonium pector... [more]
gi|1126178417|ref|XP_019621565.1|2.376e-1231.10PREDICTED: nocturnin-like [Branchiostoma belcheri][more]
gi|813185457|ref|XP_012206900.1|3.509e-1240.70hypothetical protein SPRG_11328 [Saprolegnia paras... [more]
gi|617477279|ref|XP_007576173.1|5.161e-1238.10PREDICTED: nocturnin isoform X1 [Poecilia formosa][more]
gi|961940675|ref|XP_014913531.1|5.354e-1238.10PREDICTED: nocturnin isoform X1 [Poecilia latipinn... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10166rna10166Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications