rna10166, rna10166 (mRNA) Nannochloropsis gaditana

Overview
Namerna10166
Unique Namerna10166
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length776
Alignment locationKK037264.1:33611..35299 +

Link to JBrowse

Properties
Property NameValue
Productccr4 carbon catabolite repression 4
Orig transcript idgnl|cribi|Naga_101127g3.9865.mrna
Orig protein idgnl|cribi|Naga_101127g3.9865
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037264.1supercontigKK037264.1:33611..35299 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101127g3gene9869Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10166rna10166-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20538.1cds10135Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10166 ID=rna10166|Name=rna10166|organism=Nannochloropsis gaditana|type=mRNA|length=776bp
AGAGTCAACGGAGAACGCTATTCCAACTTCTGTTTGTAGGAAGGATTGTG
GATGAACGCCAGCCATAAGTTGTCACCTACCAGGCCGTTCCTCACGATTG
AGGAGATATATGGCAACTCGTCTATCTTTTTATACTTCTTAATACTCACC
CGTACACAAACGTACACTCTCACATATTTGTGCACAGGTATGCTTCGAAA
ACTCGTCGAAGGGGAGAGACACTTTCCTGCAGCACGAGGGAGGGAGGGAG
GGACGGAGGAAGTGAGGGAGGTTGAAGTCGTCGGCCCCCCGTATCTCAGA
ATACGACATCAAGAGAGATGACTGTCGCTCCTTAGAACCATGACAGCAGC
ATAGGCAATGATGCGTCGCTGCGGTGGGCGTCATGGCATGCTGCCGTGGC
CACGCGAGCATTTCTCCTCATCCTCTTGCCCGCCCTCCCGCCCTCCCTAC
CTCCTCTCCTCCCTCCCTACCTCCCTTTCCCACCACGTCTCTCCCACAGA
GCATGAACGACTCCCCTCCACCACTACCGCTGTCTCCCGTGCGAGCAGAG
AGTGAGGGAGGGCTGGATGGAGAGAGGGACAGAGGGAGTCCGATGCGGGG
GGCCTCGGTGGAGGAGAAGACGGAAACCAAAGTGAACAGCACTTGTGAAA
AAGATTTGTCGTTACCGCACGCCATGCCGTTTACGAAGGCGCCTGCCGGG
GCGGAGGGGGAGGAGGAGAGGGAGGGACCCTGTGCGAACGGGATGGAGCA
GGACGGGGAGGAGGAAGGGAGCAGTG
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protein sequence of rna10166

>rna10166-protein ID=rna10166-protein|Name=rna10166|organism=Nannochloropsis gaditana|type=polypeptide|length=208bp
MSLPGNPIKSATAVLSSSSSSLSSPLLPRSFVPLPNTWGLSDEGVKQLPI
TRPKEGRASEEEADRRQESPLYTLIQWNVMADAFSSPSLYTRVDPPGLMA
WLYRREKVLEEVTRWNPDVVTLQEIDHYFDDLLPAFTSLGYTGAFVRKPL
NMDGTCPPSLPPSLPPSLPPSFFFCFPSSIPRMPIVLLPFRFPLFTLCVP
SQALPPFL
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mRNA from alignment at KK037264.1:33611..35299+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10166 ID=rna10166|Name=rna10166|organism=Nannochloropsis gaditana|type=mRNA|length=1689bp|location=Sequence derived from alignment at KK037264.1:33611..35299+ (Nannochloropsis gaditana)
GCGAGCGAAAGTGGCACGGGGTACCCCCCCGGGTCAGCGCAATGTCATGA
CCAAGAGTAAGAGTTGAGGTAAAATGTTGACCGAAATATGCATAGGAACG
AGGATGATGTGTTGCGAGACGAGAGACTGGCATGTTGGAATTTAGGCGTC
GTGTGGAAGCCGCTTGAATATACGCCCAGTGCAACCGGATTTGGCTGCTT
TTCGACTTCCAATTTCCTATTTGGAGGAAGTATCCCATACAAATTACCTA
AAATGCTACGAAATCCTGACTTGAATTACGATACAAGAGAGTCTCACTTT
TTTTTGGGAAAATTTTGACGCTCCGTCGCGTTTCTTATCCGGCCTTGACA
TAGCGCTCCCTTTGACTAATGATACCACCTACTCAATACCCCAGTGTCAA
AAGGACTGGAAAAATGTTCTATGTTCACCTGTCTTTCAATTACGATTATA
GATCACATTTGTTGTAATTTGTCGGCTcatcttctcttttctcGCTCTTT
TTCCCTGTATTTTATCACCTCCCGTGACGTTGCACTTCGCGAAAATCTTC
GCCCCTGCTAGGCACTTCCtagccttctcctcttccattcaCCACCATTA
TcaatcttctcctccagcaccggcGTCACTGCCTCATCGCTTTCCTCGTC
ACCCGACCCCATCCACctactcccctcccctctccccctctctcgtccCT
ACCGGCCATGTCCCTCCCGGGCAACCCCATCAAATCTGCCACTGCcgtgc
tttcctcctcgtcctcctcgctttcatcTCCCTTGCTTCCGCGGTCCTTT
GTCCCGCTTCCCAACACCTGGGGGCTGTCGGACGAGGGAGTGAAGCAGCT
CCCGATCACGCGgccaaaggaagggagggcttccgaggaggaagcggacc
GCCGACAGGAGAGCCCTCTCTACACGCTGATACAGGTACAGCGATCGAtg
tccttcacctcctctccctctcgccctccctgtctcctcgttCTTCCCGG
TTTTctacccctctcctcttgtCCGTCGTGAGCGCCttattttccttcct
cctcgggcaggacctccccctcccccggctaAACCCCGACGCATTCGTAC
CCTTTCGCACCCACACATGTgcccacccccctccctccacgcgcgcAGTG
GAACGTGATGGCcgacgccttctcctccccctccctctacacCCGGGTGG
ACCCCCCGGGCCTCATGGCGTGGCTCTACCGGCGAGAGAAGGTTCTAGAA
GAAGTCACGCGATGGAACCCAGACGTCGTGACCCTCCAGGTcagcttccc
ctcgcccatcttctctcctcttttcctttttcccctccctccgagccTCG
CCCTTAGCGGCTCCGCCTGCCCGGGATTCTTCTcagcatcctccctccct
ccctccctccctccctccctccctcctcctcaggaAATCGACCACTACTT
CGAcgacctccttcccgccttcacctcccttgGCTATACCGGTGCCTTTG
TGCGGAAACCGCTGAACATGGATGgtacctgccctccctccctccctccc
tccctccctccctccctccctccctccttcttcttctgctttccctcctc
tattCCCCGCATGCCTATCGTTCTCCTCCCGTTTCGATTCCCTCTCTTCA
CGCTTTGCGTACCGAgtcaagccctccctcccttcctcc
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Coding sequence (CDS) from alignment at KK037264.1:33611..35299+

>rna10166 ID=rna10166|Name=rna10166|organism=Nannochloropsis gaditana|type=CDS|length=1875bp|location=Sequence derived from alignment at KK037264.1:33611..35299+ (Nannochloropsis gaditana)
ATGTCCCTCCCGGGCAACCCCATCAAATCTGCCACTGCcgtgctttcctc
ctcgtcctcctcgctttcatcTCCCTTGCTTCCGCGGTCCTTTGTCCCGC
TTCCCAACACCTGGGGGCTGTCGGACGAGGGAGTGAAGCAGCTCCCGATC
ACGCGgccaaaggaagggagggcttccgaggaggaagcggaccGCCGACA
GGAGAGCCCTCTCTACACGCTGATACAGTGGAACGTGATGGCcgacgcct
tctcctccccctccctctacacCCGGGTGGACCCCCCGGGCCTCATGGCG
TGGCTCTACCGGCGAGAGAAGGTTCTAGAAGAAGTCACGCGATGGAACCC
AGACGTCGTGACCCTCCAGgaAATCGACCACTACTTCGAcgacctccttc
ccgccttcacctcccttgGCTATACCGGTGCCTTTGTGCGGAAACCGCTG
AACATGGATGgtacctgccctccctccctccctccctccctccctccctc
cctccctccctccttcttcttctgctttccctcctctattCCCCGCATGC
CTATCGTTCTCCTCCCGTTTCGATTCCCTCTCTTCACGCTTTGCGTACCG
AgtcaagccctccctcccttcctccATGTCCCTCCCGGGCAACCCCATCA
AATCTGCCACTGCcgtgctttcctcctcgtcctcctcgctttcatcTCCC
TTGCTTCCGCGGTCCTTTGTCCCGCTTCCCAACACCTGGGGGCTGTCGGA
CGAGGGAGTGAAGCAGCTCCCGATCACGCGgccaaaggaagggagggctt
ccgaggaggaagcggaccGCCGACAGGAGAGCCCTCTCTACACGCTGATA
CAGTGGAACGTGATGGCcgacgccttctcctccccctccctctacacCCG
GGTGGACCCCCCGGGCCTCATGGCGTGGCTCTACCGGCGAGAGAAGGTTC
TAGAAGAAGTCACGCGATGGAACCCAGACGTCGTGACCCTCCAGgaAATC
GACCACTACTTCGAcgacctccttcccgccttcacctcccttgGCTATAC
CGGTGCCTTTGTGCGGAAACCGCTGAACATGGATGgtacctgccctccct
ccctccctccctccctccctccctccctccctccctccttcttcttctgc
tttccctcctctattCCCCGCATGCCTATCGTTCTCCTCCCGTTTCGATT
CCCTCTCTTCACGCTTTGCGTACCGAgtcaagccctccctcccttcctcc
ATGTCCCTCCCGGGCAACCCCATCAAATCTGCCACTGCcgtgctttcctc
ctcgtcctcctcgctttcatcTCCCTTGCTTCCGCGGTCCTTTGTCCCGC
TTCCCAACACCTGGGGGCTGTCGGACGAGGGAGTGAAGCAGCTCCCGATC
ACGCGgccaaaggaagggagggcttccgaggaggaagcggaccGCCGACA
GGAGAGCCCTCTCTACACGCTGATACAGTGGAACGTGATGGCcgacgcct
tctcctccccctccctctacacCCGGGTGGACCCCCCGGGCCTCATGGCG
TGGCTCTACCGGCGAGAGAAGGTTCTAGAAGAAGTCACGCGATGGAACCC
AGACGTCGTGACCCTCCAGgaAATCGACCACTACTTCGAcgacctccttc
ccgccttcacctcccttgGCTATACCGGTGCCTTTGTGCGGAAACCGCTG
AACATGGATGgtacctgccctccctccctccctccctccctccctccctc
cctccctccctccttcttcttctgctttccctcctctattCCCCGCATGC
CTATCGTTCTCCTCCCGTTTCGATTCCCTCTCTTCACGCTTTGCGTACCG
Agtcaagccctccctcccttcctcc
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Synonyms
Publications