EWM20548.1, cds10125 (CDS) Nannochloropsis gaditana

Overview
NameEWM20548.1
Unique Namecds10125
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037264.1:10848..11164 +
Alignment locationKK037264.1:11305..11570 +

Link to JBrowse

Properties
Property NameValue
End range.
End range11570
Protein idEWM20548.1
Productsurfeit locus protein 1
Partialtrue
Orig transcript idgnl|cribi|Naga_100807g6.7976.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037264.1supercontigKK037264.1:10848..11164 +
KK037264.1supercontigKK037264.1:11305..11570 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR002994Surf1/Shy1
Homology
BLAST of EWM20548.1 vs. NCBI_GenBank
Match: gi|585100245|gb|EWM20548.1| (surfeit locus protein 1, partial [Nannochloropsis gaditana])

HSP 1 Score: 392.889 bits (1008), Expect = 2.946e-138
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0
Query:    1 MTRRGARAVQLAASQLDFSSVFLSRFASHGRRRVSSSTRLPPAGVSSSTGNSKGKSTDLAGLLLFGGLVVGTGCLGVWQSERYFWKIDAIQERNECLAKQPEPLPDFPEAYRRYLVSGTFLHGLELSVGPRAAPPSVHGPAQGLGTNPQGFYILTPFQRAGDGYVQALTRGDVGGHHRSCGGKLPEGSYRGEEG 194
            MTRRGARAVQLAASQLDFSSVFLSRFASHGRRRVSSSTRLPPAGVSSSTGNSKGKSTDLAGLLLFGGLVVGTGCLGVWQSERYFWKIDAIQERNECLAKQPEPLPDFPEAYRRYLVSGTFLHGLELSVGPRAAPPSVHGPAQGLGTNPQGFYILTPFQRAGDGYVQALTRGDVGGHHRSCGGKLPEGSYRGEEG
Sbjct:    1 MTRRGARAVQLAASQLDFSSVFLSRFASHGRRRVSSSTRLPPAGVSSSTGNSKGKSTDLAGLLLFGGLVVGTGCLGVWQSERYFWKIDAIQERNECLAKQPEPLPDFPEAYRRYLVSGTFLHGLELSVGPRAAPPSVHGPAQGLGTNPQGFYILTPFQRAGDGYVQALTRGDVGGHHRSCGGKLPEGSYRGEEG 194          
BLAST of EWM20548.1 vs. NCBI_GenBank
Match: gi|553190524|ref|XP_005855208.1| (surfeit locus 1, partial [Nannochloropsis gaditana CCMP526] >gi|422293854|gb|EKU21154.1| surfeit locus 1, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 316.235 bits (809), Expect = 2.324e-108
Identity = 160/165 (96.97%), Postives = 160/165 (96.97%), Query Frame = 0
Query:    1 MTRRGARAVQLAASQLDFSSVFLSRFASHGRRRVSSSTRLPPAGVSSSTGNSKGKSTDLAGLLLFGGLVVGTGCLGVWQSERYFWKIDAIQERNECLAKQPEPLPDFPEAYRRYLVSGTFLHGLELSVGPRAAPPSVHGPAQGLGTNPQGFYILTPFQRAGDGYV 165
            MTRRGARAVQLAASQLD SSVF SRFASH RRRVSSSTRLPPAGVSSSTGNSKGKSTDLAGLLLFGGLVVGTGCLGVWQSERYFWKIDAIQERNECLAKQ EPLPDFPEAYRRYLVSGTFLHGLELSVGPRAAPPSVHGPAQGLGTNPQGFYILTPF RAGDGYV
Sbjct:    1 MTRRGARAVQLAASQLDSSSVFSSRFASHVRRRVSSSTRLPPAGVSSSTGNSKGKSTDLAGLLLFGGLVVGTGCLGVWQSERYFWKIDAIQERNECLAKQLEPLPDFPEAYRRYLVSGTFLHGLELSVGPRAAPPSVHGPAQGLGTNPQGFYILTPF-RAGDGYV 164          
BLAST of EWM20548.1 vs. NCBI_GenBank
Match: gi|219114451|ref|XP_002176396.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217402642|gb|EEC42632.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 77.0258 bits (188), Expect = 2.534e-13
Identity = 48/125 (38.40%), Postives = 69/125 (55.20%), Query Frame = 0
Query:   49 TGNSKGKSTDLAGLLLFGGLVVGTGCLGVWQSERYFWKIDAIQERNECLAKQP----EPLPDFPE-------AYRRYLVSGTFLHGLELSVGPRAAPP-----SVHGPAQGLGTNPQGFYILTPF 157
            T  +KG ST  AG + FG L  GT  LGVWQ++RYF K   + +R   LA++P    E L  + +       ++R+  + GTF H  E+ VGPR  PP          AQG+ ++PQG+++LTP 
Sbjct:    6 TAANKGIST--AGKVFFGSLCAGTFGLGVWQTQRYFIKQTLVAQRQAELAQEPVTDLEVLSSYAQPGNGTETSFRKVRLRGTFRHDQEILVGPRGPPPGALPDKAGSSAQGMSSSPQGYFVLTPL 128          
BLAST of EWM20548.1 vs. NCBI_GenBank
Match: gi|1210518104|dbj|GAX23035.1| (surfeit locus 1 family protein [Fistulifera solaris])

HSP 1 Score: 75.8702 bits (185), Expect = 1.048e-12
Identity = 51/136 (37.50%), Postives = 71/136 (52.21%), Query Frame = 0
Query:   45 VSSSTGNSKGKSTDLAGLLLFGGLVVGTGCLGVWQSERYFWKIDAIQERNECLAKQPEPLPDFPEA------YRRYLVSGTFLHGLELSVGPRAAPP-SVHGPAQGLGTNPQGFYILTPFQRAGDGYVQALTRGDV 173
            +SSS G SK      AG + FGGL VGT  LG WQ++RYF KI  ++ER   L K P    +  E       + +  + G + H  E  VGPR  PP ++   A G+ + PQG++++TPF     G    + RG V
Sbjct:  351 MSSSKGLSK------AGQVFFGGLCVGTFGLGTWQTQRYFEKIRLMEERQNDLQKAPTTTFNLQEIQQQTNNFCQLQLQGRYDHRHEFLVGPRGPPPGALPDTAGGISSAPQGYFVMTPFILKKSGETVIVNRGWV 480          
BLAST of EWM20548.1 vs. NCBI_GenBank
Match: gi|1210517654|dbj|GAX23350.1| (surfeit locus 1 family protein [Fistulifera solaris])

HSP 1 Score: 72.4034 bits (176), Expect = 5.924e-12
Identity = 50/138 (36.23%), Postives = 68/138 (49.28%), Query Frame = 0
Query:   45 VSSSTGNSKGKSTDLAGLLLFGGLVVGTGCLGVWQSERYFWKIDAIQERNECLAKQPEPLPDFPEA------YRRYLVSGTFLHGLELSVGPRAAPPSVHGPAQ---GLGTNPQGFYILTPFQRAGDGYVQALTRGDV 173
            +SSS G SK      AG + FGGL VGT  LG WQ++RYF KI  ++ER   L K P    +  E       + +  + G + H  E  VGPR  PP          G+ + PQG++++TPF     G    + RG V
Sbjct:    1 MSSSKGLSK------AGQVFFGGLCVGTFGLGTWQTQRYFEKIRLMEERQSDLQKAPTETFNIQEIQQQTNNFCQLQLQGRYDHRHEFLVGPRGPPPGALPDTAGGGGISSAPQGYFVMTPFILKKTGETVLVNRGWV 132          
BLAST of EWM20548.1 vs. NCBI_GenBank
Match: gi|1005951053|ref|XP_015783870.1| (PREDICTED: surfeit locus protein 1-like [Tetranychus urticae])

HSP 1 Score: 71.633 bits (174), Expect = 1.115e-11
Identity = 44/119 (36.97%), Postives = 59/119 (49.58%), Query Frame = 0
Query:   59 LAGLLLFGGLVVGTGCLGVWQSERYFWKIDAIQERNECLAKQPEPLPD-----FPEAYRRYLVSGTFLHGLELSVGPRAAP-PSVHGPAQGLGTNPQGFYILTPFQRAGDGYVQALTRG 171
            LA   LF  + + T CLG WQ +RY WK +   E  + L+K+P PLP+         Y+R L+ G F H  E  +GPR     S    A  L  N  G+Y++TPF  A   Y   + RG
Sbjct:   41 LADYFLFS-IPLTTFCLGTWQVKRYKWKQELKAELKDQLSKEPVPLPEDLRKVDDMVYQRVLLRGHFDHSKEQFIGPRVLQRESAVAAASMLSGNANGYYVVTPFVLADRNYSVLINRG 158          
BLAST of EWM20548.1 vs. NCBI_GenBank
Match: gi|570318380|gb|ETO66328.1| (hypothetical protein F444_16460 [Phytophthora parasitica P1976])

HSP 1 Score: 71.2478 bits (173), Expect = 2.557e-11
Identity = 50/150 (33.33%), Postives = 72/150 (48.00%), Query Frame = 0
Query:   34 VSSSTRLPPAGVS-SSTGNSKGKSTDL---AGLLLFGGLVVGTGCLGVWQSERYFWKIDAIQERNECLAKQPEPLPDFPEA--------YRRYLVSGTFLHGLELSVGPRAAPPSVHGPAQGLGTNPQGFYILTPFQRAGDGYVQALTRG 171
            +S+STR   A  S + TG S G  ++    AG+  FG +   T  LG WQ++RY+WK+D I ER + L++    LP    A        YR+  + G F  G    + PR+AP     P+  +     G YI +  QR  DG    + RG
Sbjct:   13 LSASTRRFAASASQAKTGGSSGNESNFSRYAGMAFFGAVTATTAYLGTWQTQRYYWKVDLINERTKELSESVAELPKDATASDDIDDIEYRQLRLEGNFKVGSTFYLYPRSAPAD---PSDSVARVKSGGYIYSLLQRE-DGTPVIVNRG 158          
BLAST of EWM20548.1 vs. NCBI_GenBank
Match: gi|675205577|ref|XP_008911673.1| (hypothetical protein PPTG_16103 [Phytophthora parasitica INRA-310] >gi|568088267|gb|ETN03129.1| hypothetical protein PPTG_16103 [Phytophthora parasitica INRA-310])

HSP 1 Score: 70.8626 bits (172), Expect = 2.661e-11
Identity = 50/150 (33.33%), Postives = 72/150 (48.00%), Query Frame = 0
Query:   34 VSSSTRLPPAGVS-SSTGNSKGKSTDL---AGLLLFGGLVVGTGCLGVWQSERYFWKIDAIQERNECLAKQPEPLPDFPEA--------YRRYLVSGTFLHGLELSVGPRAAPPSVHGPAQGLGTNPQGFYILTPFQRAGDGYVQALTRG 171
            +S+STR   A  S + TG S G  ++    AG+  FG +   T  LG WQ++RY+WK+D I ER + L++    LP    A        YR+  + G F  G    + PR+AP     P+  +     G YI +  QR  DG    + RG
Sbjct:   13 LSASTRRFAASASQAKTGGSSGNESNFSRYAGMAFFGAVTATTAYLGTWQTQRYYWKVDLINERTKELSESVAELPKDATASDDIDDIEYRQLRLEGNFKVGSTFYLYPRSAPAD---PSDSVARVKSGGYIYSLLQRE-DGTPVIVNRG 158          
BLAST of EWM20548.1 vs. NCBI_GenBank
Match: gi|1020441138|gb|KZL76507.1| (SURF1 family protein [Colletotrichum tofieldiae])

HSP 1 Score: 69.707 bits (169), Expect = 8.640e-11
Identity = 62/211 (29.38%), Postives = 85/211 (40.28%), Query Frame = 0
Query:    1 MTRRGARAVQLAASQLDFSSVFLSRFASHGRRRVSSSTRLPPAGVSSSTGNSKGKSTDLA--------GLLLFGGLVVGTGCLGVWQSERYFWKIDAIQERNECLAKQPEPLPDF--PEA-----YRRYLVSGTFLHGLELSVGPRAAPPSVHGPAQGLGTNPQGFYILTPFQRAGDGYVQALTRG----DVGGHHRSCGGKLPEGSYRGE 192
            +TR GA A     S  D S   + +F +  R R S     PP    S   N      DL         GL++   + +    LG WQ +R  WK D I +  + L + P PLP    PEA     YRR   +G F H  E+ +GPR            +    QG+ ++TP +R GDG    + RG    D+    +     LP G    E
Sbjct:   30 LTRPGATA---TPSSCDTS---IRKFHTTPRARASE----PPPDFISVVDNPP----DLVRAGRRHGPGLIILALIPITAFALGTWQVQRLGWKTDLIAKFEDRLVRDPLPLPPKIDPEAVAEFDYRRVYATGRFRHDKEMLIGPR------------MWDGEQGYMVVTPLEREGDGTTVLVNRGWISKDMADQRKRPASALPRGEVTVE 214          
BLAST of EWM20548.1 vs. NCBI_GenBank
Match: gi|1069515688|ref|XP_018154343.1| (SURF1 family protein [Colletotrichum higginsianum IMI 349063] >gi|1039267552|gb|OBR05825.1| SURF1 family protein [Colletotrichum higginsianum IMI 349063])

HSP 1 Score: 69.707 bits (169), Expect = 1.082e-10
Identity = 43/145 (29.66%), Postives = 62/145 (42.76%), Query Frame = 0
Query:   61 GLLLFGGLVVGTGCLGVWQSERYFWKIDAIQERNECLAKQPEPLP---------DFPEAYRRYLVSGTFLHGLELSVGPRAAPPSVHGPAQGLGTNPQGFYILTPFQRAGDGYVQALTRG----DVGGHHRSCGGKLPEGSYRGE 192
            GL++   + +    LG WQ +R  WK D I +  + L + P PLP         DF   YRR   +G F H  E+ +GPR            +    QG+ ++TP +R GDG    + RG    D+    +     LP G    E
Sbjct:   91 GLIILALIPITAFVLGTWQVQRLGWKTDLIAKLEDRLVRDPLPLPPRIDPAAVADF--DYRRVYATGRFRHDKEMLIGPR------------MWDGEQGYMVVTPLEREGDGTTVLVNRGWIGKDMADQRKRPASALPRGEVTVE 221          
The following BLAST results are available for this feature:
BLAST of EWM20548.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100245|gb|EWM20548.1|2.946e-138100.00surfeit locus protein 1, partial [Nannochloropsis ... [more]
gi|553190524|ref|XP_005855208.1|2.324e-10896.97surfeit locus 1, partial [Nannochloropsis gaditana... [more]
gi|219114451|ref|XP_002176396.1|2.534e-1338.40predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210518104|dbj|GAX23035.1|1.048e-1237.50surfeit locus 1 family protein [Fistulifera solari... [more]
gi|1210517654|dbj|GAX23350.1|5.924e-1236.23surfeit locus 1 family protein [Fistulifera solari... [more]
gi|1005951053|ref|XP_015783870.1|1.115e-1136.97PREDICTED: surfeit locus protein 1-like [Tetranych... [more]
gi|570318380|gb|ETO66328.1|2.557e-1133.33hypothetical protein F444_16460 [Phytophthora para... [more]
gi|675205577|ref|XP_008911673.1|2.661e-1133.33hypothetical protein PPTG_16103 [Phytophthora para... [more]
gi|1020441138|gb|KZL76507.1|8.640e-1129.38SURF1 family protein [Colletotrichum tofieldiae][more]
gi|1069515688|ref|XP_018154343.1|1.082e-1029.66SURF1 family protein [Colletotrichum higginsianum ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10156rna10156Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications