rna10156, rna10156 (mRNA) Nannochloropsis gaditana

Overview
Namerna10156
Unique Namerna10156
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2645
Alignment locationKK037264.1:10743..11570 +

Link to JBrowse

Properties
Property NameValue
Productsurfeit locus protein 1
Orig transcript idgnl|cribi|Naga_100807g6.7976.mrna
Orig protein idgnl|cribi|Naga_100807g6.7976
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037264.1supercontigKK037264.1:10743..11570 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100807g6gene9859Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10156rna10156-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20548.1cds10125Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10156 ID=rna10156|Name=rna10156|organism=Nannochloropsis gaditana|type=mRNA|length=2645bp
CGTCTTCATTCTTGACATGGCTTGACACCCACATATCCCGCACGTGGAAA
TGAAGACCTTTACCCAGTAAAATGGCGCACGTGAATGATTTCAACAGGAT
TCCTTGTGCGTGTGCATGCGGGTTTGGTTGAGAAAAAGTCCTTTTGGTCT
GTAAGGGCGCTTGTTCGCTGTGATTAGCAGCTCACTTACAGGATTCTGAT
GTCGAACGTTGACCACGTCTTGACTGAACCATCTGCCCCTTACACGGCAC
TTCCGCGCATGAGTGTCCACATAACTCACAAACTTCTATTTTCAAATATG
CACCCCCCTGCAGCGTCCTTTCACTTCTGCGTCAGACGCGTAAAGCACGA
GGCGTTGACCGAGGGAGGCACGGTGTCGGCCTGCTCAGCATCATGACATA
TCCCTCTTCAACCCTTCCTTCCCCAGACCTGGTGCCCACCATGGCACGTC
CATGCTTGAGCCCCAAACAGGTCGACGACGTGCTTGCGGCATTTTTCGTT
TTGGTGGGCGTGGATCCCGACGATTTGCCGTCGTCGACCACACCTGCACA
CTGCTCGTCTCCCCCCTCCAAACCACCTCGGCACCTGACGTCTCCCACGG
GGCCCCGCACAAATATCAGCCATCGAGGCCATGTCAAACATCAGCGACAA
CTGTTGTCCTCGAAGAAACGCTTGTCGGCAGGACATATCGTGCCTGCAGG
GGAGATGAAAAGGAAACTTCTTTCCTGCTCTCATCCCAGCAAGAATGGAA
GCAAAGAACCAAGCATGACTAAGCACAAGAAGCATCGCGACCGCCTCGTG
CAATCAGCGCCTTTTCTCGGTGCCGGGACCTCTCTGTGGGGGCAGCAACA
ACAACAACGACGGATGCAGCAGCTCGGAGCTCTCTCGGTTCGCCGTTGCC
TGTTCGCGACGGACGACGACAAGGAAAACGCGTCGTCTAAGTAGGAGAGA
ACACACCTGCTGGAGAGGGCGGCAAGAGGAGGAGAGGGAGGCCACACAGC
CACCGCCGCCTCGGTCGTGGGAGTGCCACGCGATTGCGTAATCGTACGTC
TGGGGCCTGATTTTACATGGTGTACATTCAATTTCGAATCCGGGTGGAAA
AGCTCTACGGACGGTGGGGGAGAGGTGGCCCCCAGAGGAGATCCGGCCCC
CGGGGGCAAAGTTTGTATTTAAAATTTTAAATAGTGTCCGTACTTTGACC
TTTCCTCGATTGCACCGTCAAATGAAGGGGCGAGAAGTCGGATGAGAAAC
CTGCTGCCGATCGGCAGCGGAGGACGTGACTCTGATCGCCGCGCCTGAAT
GGCAACGCTGGAGGGGGAGGGAGGAGGATGGGCACGAGAAACACAGCAAG
TGAGGGGGAAGAGAAAGAGGCAAGAAAGGCGGTGGGTGCGCTAGGAAAAC
GCCGCTTCTCCTCTGGGCACGCCTCACCCTGTGACGCCTGGGTTTGTTTT
TGAGGGCATTTTTGAATTTGTTTTCTCGATAGGAAGAAAACCACAGCACC
CGTTTAATTGTTTACATGTGGACAGGCGGGTGGGATGCTGTGATATTGAG
CAGTTGTAGGGAAGCATATGAATATAGCAGCACCATAGCATACTGGTGCG
GCCGGCAACAAGAGAAGACGGAGCGATGCGGTGGGCGGTTGTCGACGTCG
ACCCCGCCTTGTCCTTCCTTCCTTCGGCGACGGAGGTGCAGGACCTGTCC
CTGACGGCAGAGGCTGTTTCTTCGGGGGAAATGGGGGAAAAGTCGGGGAA
GACAAGACGACATGGACGGGACGAGCATACGCAGGGAAGAGGGAAGAATC
GGGCGGACCAGTGTGATTGACGGTCAACAAGATGTTGCGTTCATGATGAA
CACTGATGTGCCCGCGCGTGAGGTTTGAATCAATATGGTACGTCTGTCTC
CTTACAGGCTACGAGCTGTCGAAGGAGTTTCGCAGTTCTATTCGCGAAAG
CTGATAGAGAGAGGAGGGGAGGCTGAACGACCTAGGAAGCCTGATAGACC
CGTATGATTCTGTCATGTCCATTCAAGCACCAAAAATTACCCTGTTATTT
AACATTCAGTTTTAGCATTTGAATTTGAAACTGCCATAGAAAGCAAGATA
AGGCAGGGAATTGCACGATTCGCGTGCGAGAAGAGATCGAAGAATAGCGT
TTCTGGGGGCCCCAGACTTTTAAATTGTTGTTAAGAAGGAGAAAAAATGA
TTTTACGCAAGCATGACATGCAACAAGATGATGCTGTTCGTTTCTGAAAT
GGCTTTGTTTGGAAGTACTGCCCGCACGTCTCACGGGTACCGTGCAGATG
AGATAGAAGGCAACGCTCAACGGCCAGCCGTGTGATTCCTCCGCACGTCA
AATTTGGCATTAGCTAGTTTATTCTATAAGCGCCGATGCAAATATATAGT
ACCCAGACATCCTTTGTAAGTACTTTTTTCATAAGCCTGTCTCTGCTCCA
CCTTGGTACGCATCCTCTCCCTTATTCCCTTTTCCTGCATGCACAAAGCA
GAAGGGTGTCGAAAGCTTATTGAAAACAAAGTAGATAAGTTAAGAGAAGG
TATAGAGGAATTTGGACGCAGTTGGCAGGGAACCGGTGCGAAGCCATGAG
ACTTCATGCATCAGAAAGCAGTCTCCCCAACGGTGATCTCTTTCC
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protein sequence of rna10156

>rna10156-protein ID=rna10156-protein|Name=rna10156|organism=Nannochloropsis gaditana|type=polypeptide|length=194bp
MTRRGARAVQLAASQLDFSSVFLSRFASHGRRRVSSSTRLPPAGVSSSTG
NSKGKSTDLAGLLLFGGLVVGTGCLGVWQSERYFWKIDAIQERNECLAKQ
PEPLPDFPEAYRRYLVSGTFLHGLELSVGPRAAPPSVHGPAQGLGTNPQG
FYILTPFQRAGDGYVQALTRGDVGGHHRSCGGKLPEGSYRGEEG
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mRNA from alignment at KK037264.1:10743..11570+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10156 ID=rna10156|Name=rna10156|organism=Nannochloropsis gaditana|type=mRNA|length=828bp|location=Sequence derived from alignment at KK037264.1:10743..11570+ (Nannochloropsis gaditana)
cttttGGCAGCTAGCACGAGCTCGAGACGCTCACAAGCGAATTATGTTAC
ATTGGCACAATAACAGGGGATTAGGTTATCTCAGGGCTTCCTGAGTTGCT
GTCAAATGACCCGCAGGGGAGCTAGAGCTGTGCAGCTTGCCGCTTCACAA
CTCGATTTCTCTTCCGTCTTTTTATCCCGTTTCGCTTCACATGGTCGACG
GCGGGTGTCGTCCTCGACAAGATTACCTCCTGCGGGCGTTTCCTCAAGCA
CGGGGAATTCGAAGGGGAAATCCACAGACTTGGCAGGGTTGTTGCTCTTT
GGAGGGCTAGTCGTTGGAACTGGGTGCCTAGGCGTGTGGCAGTCGGAGAG
ATATTTTTGGAAAATTGACGCCATTCAAGAACGGAACGAGTGTCTTGCAA
AACAACCTGAGCCATTGCCAGAGTAAGTTGCCCTGGATGGACGGGGGACT
CGATCCGGATGTGAACGCGCGAGATCTCTGAAAAACATTCACGCGATCTC
CGGTGCTACATGCGTGtttgtcttccctccctccatcggtCCTCCCTGAT
CCCCTTTTCCAGTTTTCCCGAAGCCTACCGCCGTTACTTGGTGAGTGGCA
CGTTTCTTCATGGCTTAGAGCTTTCTGTCGGGCCGCGGGCggctcccccc
tccgtccacggACCCGCCCAGGGCCTTGGCACCAACCCCCAAGGCTTCTA
CATCCTCACCCCTTTCCAACGCGCCGGAGACGGGTACGTGCAGGCGCTGA
CTCGGGGGGATGTTGGTGGCCACCATCGGTCTTGTGGAGGGAAGTTGCCC
GAGGGCAGTtaccggggggaggaaggga
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Coding sequence (CDS) from alignment at KK037264.1:10743..11570+

>rna10156 ID=rna10156|Name=rna10156|organism=Nannochloropsis gaditana|type=CDS|length=1166bp|location=Sequence derived from alignment at KK037264.1:10743..11570+ (Nannochloropsis gaditana)
ATGACCCGCAGGGGAGCTAGAGCTGTGCAGCTTGCCGCTTCACAACTCGA
TTTCTCTTCCGTCTTTTTATCCCGTTTCGCTTCACATGGTCGACGGCGGG
TGTCGTCCTCGACAAGATTACCTCCTGCGGGCGTTTCCTCAAGCACGGGG
AATTCGAAGGGGAAATCCACAGACTTGGCAGGGTTGTTGCTCTTTGGAGG
GCTAGTCGTTGGAACTGGGTGCCTAGGCGTGTGGCAGTCGGAGAGATATT
TTTGGAAAATTGACGCCATTCAAGAACGGAACGAGTGTCTTGCAAAACAA
CCTGAGCCATTGCCAGATTTTCCCGAAGCCTACCGCCGTTACTTGGTGAG
TGGCACGTTTCTTCATGGCTTAGAGCTTTCTGTCGGGCCGCGGGCggctc
ccccctccgtccacggACCCGCCCAGGGCCTTGGCACCAACCCCCAAGGC
TTCTACATCCTCACCCCTTTCCAACGCGCCGGAGACGGGTACGTGCAGGC
GCTGACTCGGGGGGATGTTGGTGGCCACCATCGGTCTTGTGGAGGGAAGT
TGCCCGAGGGCAGTtaccggggggaggaagggaATGACCCGCAGGGGAGC
TAGAGCTGTGCAGCTTGCCGCTTCACAACTCGATTTCTCTTCCGTCTTTT
TATCCCGTTTCGCTTCACATGGTCGACGGCGGGTGTCGTCCTCGACAAGA
TTACCTCCTGCGGGCGTTTCCTCAAGCACGGGGAATTCGAAGGGGAAATC
CACAGACTTGGCAGGGTTGTTGCTCTTTGGAGGGCTAGTCGTTGGAACTG
GGTGCCTAGGCGTGTGGCAGTCGGAGAGATATTTTTGGAAAATTGACGCC
ATTCAAGAACGGAACGAGTGTCTTGCAAAACAACCTGAGCCATTGCCAGA
TTTTCCCGAAGCCTACCGCCGTTACTTGGTGAGTGGCACGTTTCTTCATG
GCTTAGAGCTTTCTGTCGGGCCGCGGGCggctcccccctccgtccacggA
CCCGCCCAGGGCCTTGGCACCAACCCCCAAGGCTTCTACATCCTCACCCC
TTTCCAACGCGCCGGAGACGGGTACGTGCAGGCGCTGACTCGGGGGGATG
TTGGTGGCCACCATCGGTCTTGTGGAGGGAAGTTGCCCGAGGGCAGTtac
cggggggaggaaggga
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Synonyms
Publications