EWM20551.1, cds10124 (CDS) Nannochloropsis gaditana

Overview
NameEWM20551.1
Unique Namecds10124
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037264.1:7976..8295 +
Alignment locationKK037264.1:8571..8802 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20551.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100807g3.7979.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037264.1supercontigKK037264.1:7976..8295 +
KK037264.1supercontigKK037264.1:8571..8802 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM20551.1 vs. NCBI_GenBank
Match: gi|585100248|gb|EWM20551.1| (hypothetical protein Naga_100807g3 [Nannochloropsis gaditana])

HSP 1 Score: 371.703 bits (953), Expect = 2.719e-130
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0 
Query:    1 MTYPSSTLPSPDLVPTMARPCLSPKQVDDVLAAFFVLVGVDPDDLPSSTTPAHCSSPPSKPPRHLTSPTGPRTNISHRGHVKHQRQLLSSKKRLSAGHIVPAGEMKRKLLSCSHPSKNGSKEPSMTKHKKHRDRLVQSAPFLGAGTSLWGQQQQQRRMQQLGALSVRRCLFATDDDKENASSK 183
            MTYPSSTLPSPDLVPTMARPCLSPKQVDDVLAAFFVLVGVDPDDLPSSTTPAHCSSPPSKPPRHLTSPTGPRTNISHRGHVKHQRQLLSSKKRLSAGHIVPAGEMKRKLLSCSHPSKNGSKEPSMTKHKKHRDRLVQSAPFLGAGTSLWGQQQQQRRMQQLGALSVRRCLFATDDDKENASSK
Sbjct:    1 MTYPSSTLPSPDLVPTMARPCLSPKQVDDVLAAFFVLVGVDPDDLPSSTTPAHCSSPPSKPPRHLTSPTGPRTNISHRGHVKHQRQLLSSKKRLSAGHIVPAGEMKRKLLSCSHPSKNGSKEPSMTKHKKHRDRLVQSAPFLGAGTSLWGQQQQQRRMQQLGALSVRRCLFATDDDKENASSK 183
[Close]
BLAST of EWM20551.1 vs. NCBI_GenBank
Match: gi|553190521|ref|XP_005855207.1| (hypothetical protein NGA_0073300 [Nannochloropsis gaditana CCMP526] >gi|422293853|gb|EKU21153.1| hypothetical protein NGA_0073300 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 339.732 bits (870), Expect = 9.491e-118
Identity = 170/183 (92.90%), Postives = 172/183 (93.99%), Query Frame = 0 
Query:    1 MTYPSSTLPSPDLVPTMARPCLSPKQVDDVLAAFFVLVGVDPDDLPSSTTPAHCSSPPSKPPRHLTSPTGPRTNISHRGHVKHQRQLLSSKKRLSAGHIVPAGEMKRKLLSCSHPSKNGSKEPSMTKHKKHRDRLVQSAPFLGAGTSLWGQQQQQRRMQQLGALSVRRCLFATDDDKENASSK 183
            MTYPSSTLPSPDLVPTMARPCLSPKQVDDVLAAFFVLVGVDPD+LPS TTPAHCSSPPSKPPRH+TSPTGPRTNISHRGHVKHQRQLLSSKKRLSAGHIVPAGEMK         SK GSKEPSMTKHKKHRDRLVQSAPFLGAGTSLWGQQQQQRRMQQLGALSVRRCLFATDDDKENASSK
Sbjct:    1 MTYPSSTLPSPDLVPTMARPCLSPKQVDDVLAAFFVLVGVDPDNLPSLTTPAHCSSPPSKPPRHMTSPTGPRTNISHRGHVKHQRQLLSSKKRLSAGHIVPAGEMK---------SKKGSKEPSMTKHKKHRDRLVQSAPFLGAGTSLWGQQQQQRRMQQLGALSVRRCLFATDDDKENASSK 174
The following BLAST results are available for this feature:
BLAST of EWM20551.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585100248|gb|EWM20551.1|2.719e-130100.00hypothetical protein Naga_100807g3 [Nannochloropsi... [more]
gi|553190521|ref|XP_005855207.1|9.491e-11892.90hypothetical protein NGA_0073300 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10155rna10155Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications