rna10125, rna10125 (mRNA) Nannochloropsis gaditana

Overview
Namerna10125
Unique Namerna10125
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length328
Alignment locationKK037263.1:2124..3799 -

Link to JBrowse

Properties
Property NameValue
Productexosome complex exonuclease rrp4
Orig transcript idgnl|cribi|Naga_101081g2.2071.mrna
Orig protein idgnl|cribi|Naga_101081g2.2071
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037263.1supercontigKK037263.1:2124..3799 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101081g2gene9828Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10125rna10125-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20579.1cds10094Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10125 ID=rna10125|Name=rna10125|organism=Nannochloropsis gaditana|type=mRNA|length=328bp
GGGGGGGATGGCACATCCGAATGTCGATGAGAATGTGCCCCGAGGTGCCC
CCAGCGCGTATTTTGGAACAGTTTGGGACCAAGATTGGTGGGAATATACA
TACATATATATATATATATATATATGGTATATGCAACGTGTGTCCCGTCC
GGGTTATGGTGAGTCAAACCACCCCTTATCATTGCCCGCTTCATTGGCTT
GTGCACGCCACGACAAGAGGCACGAATTAAAAATATTCGCTTCAACGCTT
CGCCCTCCAAAGGATCCTCGACTCTCGTTTAGACGTCTCATGGCTTTTCT
TTTGTCGGCATTGCCACCTTTCTCCTCC
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protein sequence of rna10125

>rna10125-protein ID=rna10125-protein|Name=rna10125|organism=Nannochloropsis gaditana|type=polypeptide|length=133bp
MAVRVSVIGKRSRDMALPDNGRAYVPDATVAVPGQVLMEADVDKEGGLSF
IRGHGTYQEDAAERGSSVGVESNAGKVRLCAGVAGVIERVNKLVTVVPPN
TRYQGAIGDLVVGRVTEVGAKRWKVDLRGHKVR
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mRNA from alignment at KK037263.1:2124..3799-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10125 ID=rna10125|Name=rna10125|organism=Nannochloropsis gaditana|type=mRNA|length=1676bp|location=Sequence derived from alignment at KK037263.1:2124..3799- (Nannochloropsis gaditana)
CTACTATTATTTCTTAAGTGCGCATGTTTCGAACCAAATCCGAACGTCAG
TATAATGTGACAGTAATGTAGAATTGGAATAGTGTACCGTTTAGAGTGCT
TCAGGCATTCAAAGTCGGGTTAGTGTATGTCCGTCAATCCCTCCGAAGCA
CCTCCACTATTGGAGAACCACATTTCCTCCCATGCTGGTTTCAGATACAA
GGGTAGCTGAAATAGTCTGTCCCGAATACAGAGTTCTGGAGCCTAGAGGA
TGCCCTCATCAGTATGCATCAGTAAGGAGCAGCACCAGTAAGAAGTTCGG
GGGAATCGCAAATGCTCAAATTCGGAATAGATCTGAGTCATCGAGTCGTT
TGAAAATTTCATTTAAAAGACCTAGCGACCGCTTTTAGATGTACTTTACA
GAGGAAACAACACGATCGCTCTAATATTTTGCATTTCTCAGAGCAAAACA
AGAAGTAGGAGCGATTTGCGCCAGGACTCTCACACTATCAGGATAAACGA
AATCCAAAAGGTCCTATGCCTTTTTGGGGATAATTGTCTTCTGTAAAATC
GGGCACGCACGATTGCAGCATTCGCAGTGGAAACCAATTGTGCATGTAGG
AGGAGGTTAAAATGATAATCATTGCAGCGAACCAGTCCAAATGCGCGTCG
AAATTCAGTACTAGTCAATGCATATCGTACAAATTTATTTCAGCTCCTTT
ACGACGACTTTACTCACGACGGTGGGAAGAGAAATTCGTGGAAGGTCGAA
ATTCAGTCCAAAAAGATTAAGTTTTAAATAGGGGGGTATGTGCGATAGCC
AGTAGGTGACCCCTTCCTGCTCAGGGACTCTGACTTCCCTCCCGTCACTT
CCTAACTGCAAATATCAATGCTGATATTACCCAAAATCATTTCCAAGCAG
AGCTCATGGCAGTGCGCGTTTCTGTGATTGGAAAGCGGTCCCGTGACATG
GCTTTACCTGACAAGTGAGTGTCGACCTCCCTCCCTCTCTCCCTTCCTCC
CTCCCTCCCTCCCCCCCTCCCTCCCCCCCTCCCTTCCTCCTTCCCTCCCT
TCCTTCCCTGCTCTACCAGCCCCCCCCTTTCTTTCATCCTCCTTCTGTCC
TTCCCCCCCGTCTTCCCCCCCTTCACCACCACAATTCACCCTTTCTTCTC
TCCCATCCATCCAGCGGGCGGGCCTACGTCCCGGATGCTACTGTGGCCGT
ACCAGGACAAGTACTCATGGAAGCCGATGTTGATAAGGAGGGGGGACTGT
CCTTCATTCGCGGGCATGGAACGTACCAGGAAGATGCCGCCGAGAGAGGA
AGTTCCGTCGGGGTGGAGTCGAACGCCGGGAAAGTCAGGCTGTGCGCCGG
CGTTGCAGGCGTGATCGAACGAGTGAACAAATTAGTGACCGTGGTCCCTC
CCAACACCCGCTACCAGGTGCGCACAGAGTCGGACCGGGAGGGAATCTTC
GGCTCGATGCCTGAATCCGCCGCAAACGTGCAACACCATCTACTGTGGTG
GCACGAGGTCTCCCCCTGCTTTCTGTCTTTCCCATTCCAGCACGCCGTAC
CCCCCCCCCCACTCTTTCCCTTTCCTACATATACCTAGGGCGCCATAGGG
GATCTGGTCGTCGGCCGCGTCACGGAAGTGGGAGCGAAGCGCTGGAAAGT
GGATTTGAGAGGCCATAAGGTGAGGA
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Coding sequence (CDS) from alignment at KK037263.1:2124..3799-

>rna10125 ID=rna10125|Name=rna10125|organism=Nannochloropsis gaditana|type=CDS|length=1200bp|location=Sequence derived from alignment at KK037263.1:2124..3799- (Nannochloropsis gaditana)
GGCGCCATAGGGGATCTGGTCGTCGGCCGCGTCACGGAAGTGGGAGCGAA
GCGCTGGAAAGTGGATTTGAGAGGCCATAAGGTGAGGACGGGCGGGCCTA
CGTCCCGGATGCTACTGTGGCCGTACCAGGACAAGTACTCATGGAAGCCG
ATGTTGATAAGGAGGGGGGACTGTCCTTCATTCGCGGGCATGGAACGTAC
CAGGAAGATGCCGCCGAGAGAGGAAGTTCCGTCGGGGTGGAGTCGAACGC
CGGGAAAGTCAGGCTGTGCGCCGGCGTTGCAGGCGTGATCGAACGAGTGA
ACAAATTAGTGACCGTGGTCCCTCCCAACACCCGCTACCAGATGGCAGTG
CGCGTTTCTGTGATTGGAAAGCGGTCCCGTGACATGGCTTTACCTGACAA
GGCGCCATAGGGGATCTGGTCGTCGGCCGCGTCACGGAAGTGGGAGCGAA
GCGCTGGAAAGTGGATTTGAGAGGCCATAAGGTGAGGACGGGCGGGCCTA
CGTCCCGGATGCTACTGTGGCCGTACCAGGACAAGTACTCATGGAAGCCG
ATGTTGATAAGGAGGGGGGACTGTCCTTCATTCGCGGGCATGGAACGTAC
CAGGAAGATGCCGCCGAGAGAGGAAGTTCCGTCGGGGTGGAGTCGAACGC
CGGGAAAGTCAGGCTGTGCGCCGGCGTTGCAGGCGTGATCGAACGAGTGA
ACAAATTAGTGACCGTGGTCCCTCCCAACACCCGCTACCAGATGGCAGTG
CGCGTTTCTGTGATTGGAAAGCGGTCCCGTGACATGGCTTTACCTGACAA
GGCGCCATAGGGGATCTGGTCGTCGGCCGCGTCACGGAAGTGGGAGCGAA
GCGCTGGAAAGTGGATTTGAGAGGCCATAAGGTGAGGACGGGCGGGCCTA
CGTCCCGGATGCTACTGTGGCCGTACCAGGACAAGTACTCATGGAAGCCG
ATGTTGATAAGGAGGGGGGACTGTCCTTCATTCGCGGGCATGGAACGTAC
CAGGAAGATGCCGCCGAGAGAGGAAGTTCCGTCGGGGTGGAGTCGAACGC
CGGGAAAGTCAGGCTGTGCGCCGGCGTTGCAGGCGTGATCGAACGAGTGA
ACAAATTAGTGACCGTGGTCCCTCCCAACACCCGCTACCAGATGGCAGTG
CGCGTTTCTGTGATTGGAAAGCGGTCCCGTGACATGGCTTTACCTGACAA
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Synonyms
Publications