EWM20579.1, cds10094 (CDS) Nannochloropsis gaditana

Overview
NameEWM20579.1
Unique Namecds10094
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037263.1:2836..2894 -
Alignment locationKK037263.1:2383..2635 -
Alignment locationKK037263.1:2124..2211 -

Link to JBrowse

Properties
Property NameValue
Start range2124
Start range.
Protein idEWM20579.1
Productexosome complex exonuclease rrp4
Partialtrue
Orig transcript idgnl|cribi|Naga_101081g2.2071.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037263.1supercontigKK037263.1:2836..2894 -
KK037263.1supercontigKK037263.1:2383..2635 -
KK037263.1supercontigKK037263.1:2124..2211 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0000178exosome (RNase complex)
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR026699Exosome_RNA_bind1/RRP40/RRP4
Homology
BLAST of EWM20579.1 vs. NCBI_GenBank
Match: gi|585100309|gb|EWM20579.1| (exosome complex exonuclease rrp4, partial [Nannochloropsis gaditana])

HSP 1 Score: 264.618 bits (675), Expect = 1.916e-89
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0
Query:    1 MAVRVSVIGKRSRDMALPDNGRAYVPDATVAVPGQVLMEADVDKEGGLSFIRGHGTYQEDAAERGSSVGVESNAGKVRLCAGVAGVIERVNKLVTVVPPNTRYQGAIGDLVVGRVTEVGAKRWKVDLRGHKVR 133
            MAVRVSVIGKRSRDMALPDNGRAYVPDATVAVPGQVLMEADVDKEGGLSFIRGHGTYQEDAAERGSSVGVESNAGKVRLCAGVAGVIERVNKLVTVVPPNTRYQGAIGDLVVGRVTEVGAKRWKVDLRGHKVR
Sbjct:    1 MAVRVSVIGKRSRDMALPDNGRAYVPDATVAVPGQVLMEADVDKEGGLSFIRGHGTYQEDAAERGSSVGVESNAGKVRLCAGVAGVIERVNKLVTVVPPNTRYQGAIGDLVVGRVTEVGAKRWKVDLRGHKVR 133          
BLAST of EWM20579.1 vs. NCBI_GenBank
Match: gi|1191057124|ref|XP_020906665.1| (exosome complex component RRP4-like [Exaiptasia pallida] >gi|999990613|gb|KXJ29635.1| Exosome complex component RRP4 [Exaiptasia pallida])

HSP 1 Score: 87.8113 bits (216), Expect = 2.943e-18
Identity = 50/115 (43.48%), Postives = 67/115 (58.26%), Query Frame = 0
Query:   12 SRDMALPDNGRAYVPDATVAVPGQVLMEADVDKEGGLSFIRGHGTYQEDAAERGSSVGVESNAGKVRLCAGVAGVIERVNKLVTVVPPNTRYQGAIGDLVVGRVTEVGAKRWKVD 126
            S D+ LP   R  +P    + P  ++   DV  E  L ++RGHGT+ +D                 +L A V+G++ERVNKL+ V P NTRY G IGD+VVGR+TEVG KRWKV+
Sbjct:    2 SVDIRLPSKRRT-LPRQVDSEPKHIVSPGDVISED-LGYMRGHGTFVQDD----------------KLIASVSGIVERVNKLICVRPFNTRYNGEIGDVVVGRITEVGQKRWKVE 98          
BLAST of EWM20579.1 vs. NCBI_GenBank
Match: gi|1028573843|gb|OAJ42147.1| (hypothetical protein, variant [Batrachochytrium dendrobatidis JEL423])

HSP 1 Score: 86.2705 bits (212), Expect = 5.511e-18
Identity = 44/105 (41.90%), Postives = 64/105 (60.95%), Query Frame = 0
Query:   27 DATVAVPGQVLMEADVDKEGGLSFIRGHGTYQEDAAERGSSVGVESNAGKVRLCAGVAGVIERVNKLVTVVPPNTRYQGAIGDLVVGRVTEVGAKRWKVDLRGHK 131
            D  +  PG+++ +         +F+RGHGT+ E+ A                L A VAGV+ERVNKL++V P  +RY G IGD+VVGR++E+G KRWKVD++G +
Sbjct:   36 DRQMVTPGEIITKDS-------AFMRGHGTFTEEQA----------------LVASVAGVVERVNKLISVKPLKSRYNGEIGDVVVGRISELGPKRWKVDIKGRQ 117          
BLAST of EWM20579.1 vs. NCBI_GenBank
Match: gi|970616688|gb|KUF64836.1| (Exosome complex component RRP4 [Phytophthora nicotianae])

HSP 1 Score: 86.6557 bits (213), Expect = 6.494e-18
Identity = 55/133 (41.35%), Postives = 74/133 (55.64%), Query Frame = 0
Query:    1 MAVRVSVIGKRSRD--MALPDNGRAYVPDATVAVPGQVLMEADVDKEGGLSFIRGHGTYQEDAAERGSSVGVESNAGKVRLCAGVAGVIERVNKLVTVVPPNTRYQGAIGDLVVGRVTEVGAKRWKVDLRGHK 131
            M VRV  +   + D  M L D  +       V  PGQV     +  + G +F+RGHGTY                +G+  L A VAGV+E+VN+L+TV P  +RY G +GD+VVGRVTEV +KRWKVD+ G +
Sbjct:    1 MEVRVRRLSATTEDEPMELADESQV-----VVVTPGQV-----ISTDTG-AFLRGHGTYL---------------SGRNELVASVAGVVEKVNQLITVRPLVSRYIGEVGDIVVGRVTEVASKRWKVDVNGQQ 107          
BLAST of EWM20579.1 vs. NCBI_GenBank
Match: gi|675169197|ref|XP_008893483.1| (hypothetical protein PPTG_01840 [Phytophthora parasitica INRA-310] >gi|566022035|gb|ETI44946.1| hypothetical protein F443_10390 [Phytophthora parasitica P1569] >gi|567959339|gb|ETK84912.1| hypothetical protein L915_10168 [Phytophthora parasitica] >gi|567988047|gb|ETL38331.1| hypothetical protein L916_10074 [Phytophthora parasitica] >gi|568017269|gb|ETL91446.1| hypothetical protein L917_10005 [Phytophthora parasitica] >gi|568047684|gb|ETM44758.1| hypothetical protein L914_10038 [Phytophthora parasitica] >gi|568107091|gb|ETN21721.1| hypothetical protein PPTG_01840 [Phytophthora parasitica INRA-310] >gi|570325606|gb|ETO73554.1| hypothetical protein F444_10503 [Phytophthora parasitica P1976] >gi|570949481|gb|ETP14738.1| hypothetical protein F441_10343 [Phytophthora parasitica CJ01A1] >gi|570982846|gb|ETP42808.1| hypothetical protein F442_10307 [Phytophthora parasitica P10297])

HSP 1 Score: 86.6557 bits (213), Expect = 6.819e-18
Identity = 55/133 (41.35%), Postives = 74/133 (55.64%), Query Frame = 0
Query:    1 MAVRVSVIGKRSRD--MALPDNGRAYVPDATVAVPGQVLMEADVDKEGGLSFIRGHGTYQEDAAERGSSVGVESNAGKVRLCAGVAGVIERVNKLVTVVPPNTRYQGAIGDLVVGRVTEVGAKRWKVDLRGHK 131
            M VRV  +   + D  M L D  +       V  PGQV     +  + G +F+RGHGTY                +G+  L A VAGV+E+VN+L+TV P  +RY G +GD+VVGRVTEV +KRWKVD+ G +
Sbjct:    3 MEVRVRRLSATTEDEPMELADESQV-----VVVTPGQV-----ISTDTG-AFLRGHGTYL---------------SGRNELVASVAGVVEKVNQLITVRPLVSRYIGEVGDIVVGRVTEVASKRWKVDVNGQQ 109          
BLAST of EWM20579.1 vs. NCBI_GenBank
Match: gi|1028573842|gb|OAJ42146.1| (hypothetical protein BDEG_25644 [Batrachochytrium dendrobatidis JEL423])

HSP 1 Score: 86.6557 bits (213), Expect = 9.486e-18
Identity = 44/105 (41.90%), Postives = 64/105 (60.95%), Query Frame = 0
Query:   27 DATVAVPGQVLMEADVDKEGGLSFIRGHGTYQEDAAERGSSVGVESNAGKVRLCAGVAGVIERVNKLVTVVPPNTRYQGAIGDLVVGRVTEVGAKRWKVDLRGHK 131
            D  +  PG+++ +         +F+RGHGT+ E+ A                L A VAGV+ERVNKL++V P  +RY G IGD+VVGR++E+G KRWKVD++G +
Sbjct:   36 DRQMVTPGEIITKDS-------AFMRGHGTFTEEQA----------------LVASVAGVVERVNKLISVKPLKSRYNGEIGDVVVGRISELGPKRWKVDIKGRQ 117          
BLAST of EWM20579.1 vs. NCBI_GenBank
Match: gi|953493425|emb|CEG44501.1| (exosome complex exonuclease rrp4 [Plasmopara halstedii])

HSP 1 Score: 85.5001 bits (210), Expect = 1.803e-17
Identity = 48/105 (45.71%), Postives = 64/105 (60.95%), Query Frame = 0
Query:   27 DATVAVPGQVLMEADVDKEGGLSFIRGHGTYQEDAAERGSSVGVESNAGKVRLCAGVAGVIERVNKLVTVVPPNTRYQGAIGDLVVGRVTEVGAKRWKVDLRGHK 131
            +  V  PGQV     +  + G +F+RGHGTY  +  E               L A VAGV+E+VN+L+TV P  +RY G +GD+VVGRVTEVG+KRWKVD+ G +
Sbjct:   24 ELVVVTPGQV-----ISTDTG-AFLRGHGTYLSNRNE---------------LVASVAGVVEKVNQLITVRPLVSRYIGEVGDIVVGRVTEVGSKRWKVDVNGQQ 107          
BLAST of EWM20579.1 vs. NCBI_GenBank
Match: gi|1149598607|gb|OON06258.1| (hypothetical protein BSLG_04037 [Batrachochytrium salamandrivorans])

HSP 1 Score: 85.5001 bits (210), Expect = 2.968e-17
Identity = 52/134 (38.81%), Postives = 75/134 (55.97%), Query Frame = 0
Query:    3 VRVSVIGKRSRDMALPD-NGRAYVPD----ATVAVPGQVLMEADVDKEGGLSFIRGHGTYQEDAAERGSSVGVESNAGKVRLCAGVAGVIERVNKLVTVVPPNTRYQGAIGDLVVGRVTEVGAKRWKVDLRGHK 131
            + +SV   R R M + D NG +   +     +  V  Q++   +V      +F+RGHGT+ E+                  L A VAGV+ERVNKLV+V P  +RY G IGD+VVGR++E+G KRWKVD++G +
Sbjct:    2 IDISVPPSRQRTMLMADVNGLSETNNDMEICSTNVERQLVTPGEVITRDS-AFMRGHGTFTEEQT----------------LMASVAGVVERVNKLVSVKPLKSRYNGEIGDVVVGRISELGPKRWKVDIKGRQ 118          
BLAST of EWM20579.1 vs. NCBI_GenBank
Match: gi|1072229581|gb|OEU14315.1| (hypothetical protein FRACYDRAFT_188261 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 85.1149 bits (209), Expect = 4.174e-17
Identity = 40/99 (40.40%), Postives = 61/99 (61.62%), Query Frame = 0
Query:   28 ATVAVPGQVLMEADVDKEGGLSFIRGHGTYQEDAAERGSSVGVESNAGKVRLCAGVAGVIERVNKLVTVVPPN-TRYQGAIGDLVVGRVTEVGAKRWKV 125
            A + +PGQV+  +  +      F+RGHGTY E ++ +G          + RL + V G+I RVNKL+TV+P N + Y+G +GDLV+GR++ V + RW V
Sbjct:   14 AHLVIPGQVIATSSSNNNKSDRFLRGHGTYVESSSNKG---------NEERLISSVCGIIHRVNKLITVIPYNESIYKGNVGDLVIGRISSVSSSRWTV 103          
BLAST of EWM20579.1 vs. NCBI_GenBank
Match: gi|1026959537|ref|XP_016611291.1| (hypothetical protein SPPG_02305 [Spizellomyces punctatus DAOM BR117] >gi|907097780|gb|KND03252.1| hypothetical protein SPPG_02305 [Spizellomyces punctatus DAOM BR117])

HSP 1 Score: 84.7297 bits (208), Expect = 4.409e-17
Identity = 50/121 (41.32%), Postives = 68/121 (56.20%), Query Frame = 0
Query:   14 DMAL---PDNGRAYVPDATVAVPGQVLMEADVDKEGGLSFIRGHGTYQEDAAERGSSVGVESNAGKVRLCAGVAGVIERVNKLVTVVPPNTRYQGAIGDLVVGRVTEVGAKRWKVDLRGHK 131
            DMA+    D+G  ++       PG+V+           +F+RGHGTY ED A                L A +AGV++RVNKL++V P  TRY G IGD+VVGR+TEVG +RWKVD+   +
Sbjct:   17 DMAVDNESDDGNTHI-----VTPGEVVTR-------DTAFMRGHGTYTEDDA----------------LVASMAGVVDRVNKLISVRPLRTRYNGEIGDVVVGRITEVGPRRWKVDINARQ 109          
The following BLAST results are available for this feature:
BLAST of EWM20579.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100309|gb|EWM20579.1|1.916e-89100.00exosome complex exonuclease rrp4, partial [Nannoch... [more]
gi|1191057124|ref|XP_020906665.1|2.943e-1843.48exosome complex component RRP4-like [Exaiptasia pa... [more]
gi|1028573843|gb|OAJ42147.1|5.511e-1841.90hypothetical protein, variant [Batrachochytrium de... [more]
gi|970616688|gb|KUF64836.1|6.494e-1841.35Exosome complex component RRP4 [Phytophthora nicot... [more]
gi|675169197|ref|XP_008893483.1|6.819e-1841.35hypothetical protein PPTG_01840 [Phytophthora para... [more]
gi|1028573842|gb|OAJ42146.1|9.486e-1841.90hypothetical protein BDEG_25644 [Batrachochytrium ... [more]
gi|953493425|emb|CEG44501.1|1.803e-1745.71exosome complex exonuclease rrp4 [Plasmopara halst... [more]
gi|1149598607|gb|OON06258.1|2.968e-1738.81hypothetical protein BSLG_04037 [Batrachochytrium ... [more]
gi|1072229581|gb|OEU14315.1|4.174e-1740.40hypothetical protein FRACYDRAFT_188261 [Fragilario... [more]
gi|1026959537|ref|XP_016611291.1|4.409e-1741.32hypothetical protein SPPG_02305 [Spizellomyces pun... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10125rna10125Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications