EWM20579.1, cds10094 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM20579.1 vs. NCBI_GenBank
Match: gi|585100309|gb|EWM20579.1| (exosome complex exonuclease rrp4, partial [Nannochloropsis gaditana]) HSP 1 Score: 264.618 bits (675), Expect = 1.916e-89 Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0 Query: 1 MAVRVSVIGKRSRDMALPDNGRAYVPDATVAVPGQVLMEADVDKEGGLSFIRGHGTYQEDAAERGSSVGVESNAGKVRLCAGVAGVIERVNKLVTVVPPNTRYQGAIGDLVVGRVTEVGAKRWKVDLRGHKVR 133 MAVRVSVIGKRSRDMALPDNGRAYVPDATVAVPGQVLMEADVDKEGGLSFIRGHGTYQEDAAERGSSVGVESNAGKVRLCAGVAGVIERVNKLVTVVPPNTRYQGAIGDLVVGRVTEVGAKRWKVDLRGHKVR Sbjct: 1 MAVRVSVIGKRSRDMALPDNGRAYVPDATVAVPGQVLMEADVDKEGGLSFIRGHGTYQEDAAERGSSVGVESNAGKVRLCAGVAGVIERVNKLVTVVPPNTRYQGAIGDLVVGRVTEVGAKRWKVDLRGHKVR 133
BLAST of EWM20579.1 vs. NCBI_GenBank
Match: gi|1191057124|ref|XP_020906665.1| (exosome complex component RRP4-like [Exaiptasia pallida] >gi|999990613|gb|KXJ29635.1| Exosome complex component RRP4 [Exaiptasia pallida]) HSP 1 Score: 87.8113 bits (216), Expect = 2.943e-18 Identity = 50/115 (43.48%), Postives = 67/115 (58.26%), Query Frame = 0 Query: 12 SRDMALPDNGRAYVPDATVAVPGQVLMEADVDKEGGLSFIRGHGTYQEDAAERGSSVGVESNAGKVRLCAGVAGVIERVNKLVTVVPPNTRYQGAIGDLVVGRVTEVGAKRWKVD 126 S D+ LP R +P + P ++ DV E L ++RGHGT+ +D +L A V+G++ERVNKL+ V P NTRY G IGD+VVGR+TEVG KRWKV+ Sbjct: 2 SVDIRLPSKRRT-LPRQVDSEPKHIVSPGDVISED-LGYMRGHGTFVQDD----------------KLIASVSGIVERVNKLICVRPFNTRYNGEIGDVVVGRITEVGQKRWKVE 98
BLAST of EWM20579.1 vs. NCBI_GenBank
Match: gi|1028573843|gb|OAJ42147.1| (hypothetical protein, variant [Batrachochytrium dendrobatidis JEL423]) HSP 1 Score: 86.2705 bits (212), Expect = 5.511e-18 Identity = 44/105 (41.90%), Postives = 64/105 (60.95%), Query Frame = 0 Query: 27 DATVAVPGQVLMEADVDKEGGLSFIRGHGTYQEDAAERGSSVGVESNAGKVRLCAGVAGVIERVNKLVTVVPPNTRYQGAIGDLVVGRVTEVGAKRWKVDLRGHK 131 D + PG+++ + +F+RGHGT+ E+ A L A VAGV+ERVNKL++V P +RY G IGD+VVGR++E+G KRWKVD++G + Sbjct: 36 DRQMVTPGEIITKDS-------AFMRGHGTFTEEQA----------------LVASVAGVVERVNKLISVKPLKSRYNGEIGDVVVGRISELGPKRWKVDIKGRQ 117
BLAST of EWM20579.1 vs. NCBI_GenBank
Match: gi|970616688|gb|KUF64836.1| (Exosome complex component RRP4 [Phytophthora nicotianae]) HSP 1 Score: 86.6557 bits (213), Expect = 6.494e-18 Identity = 55/133 (41.35%), Postives = 74/133 (55.64%), Query Frame = 0 Query: 1 MAVRVSVIGKRSRD--MALPDNGRAYVPDATVAVPGQVLMEADVDKEGGLSFIRGHGTYQEDAAERGSSVGVESNAGKVRLCAGVAGVIERVNKLVTVVPPNTRYQGAIGDLVVGRVTEVGAKRWKVDLRGHK 131 M VRV + + D M L D + V PGQV + + G +F+RGHGTY +G+ L A VAGV+E+VN+L+TV P +RY G +GD+VVGRVTEV +KRWKVD+ G + Sbjct: 1 MEVRVRRLSATTEDEPMELADESQV-----VVVTPGQV-----ISTDTG-AFLRGHGTYL---------------SGRNELVASVAGVVEKVNQLITVRPLVSRYIGEVGDIVVGRVTEVASKRWKVDVNGQQ 107
BLAST of EWM20579.1 vs. NCBI_GenBank
Match: gi|675169197|ref|XP_008893483.1| (hypothetical protein PPTG_01840 [Phytophthora parasitica INRA-310] >gi|566022035|gb|ETI44946.1| hypothetical protein F443_10390 [Phytophthora parasitica P1569] >gi|567959339|gb|ETK84912.1| hypothetical protein L915_10168 [Phytophthora parasitica] >gi|567988047|gb|ETL38331.1| hypothetical protein L916_10074 [Phytophthora parasitica] >gi|568017269|gb|ETL91446.1| hypothetical protein L917_10005 [Phytophthora parasitica] >gi|568047684|gb|ETM44758.1| hypothetical protein L914_10038 [Phytophthora parasitica] >gi|568107091|gb|ETN21721.1| hypothetical protein PPTG_01840 [Phytophthora parasitica INRA-310] >gi|570325606|gb|ETO73554.1| hypothetical protein F444_10503 [Phytophthora parasitica P1976] >gi|570949481|gb|ETP14738.1| hypothetical protein F441_10343 [Phytophthora parasitica CJ01A1] >gi|570982846|gb|ETP42808.1| hypothetical protein F442_10307 [Phytophthora parasitica P10297]) HSP 1 Score: 86.6557 bits (213), Expect = 6.819e-18 Identity = 55/133 (41.35%), Postives = 74/133 (55.64%), Query Frame = 0 Query: 1 MAVRVSVIGKRSRD--MALPDNGRAYVPDATVAVPGQVLMEADVDKEGGLSFIRGHGTYQEDAAERGSSVGVESNAGKVRLCAGVAGVIERVNKLVTVVPPNTRYQGAIGDLVVGRVTEVGAKRWKVDLRGHK 131 M VRV + + D M L D + V PGQV + + G +F+RGHGTY +G+ L A VAGV+E+VN+L+TV P +RY G +GD+VVGRVTEV +KRWKVD+ G + Sbjct: 3 MEVRVRRLSATTEDEPMELADESQV-----VVVTPGQV-----ISTDTG-AFLRGHGTYL---------------SGRNELVASVAGVVEKVNQLITVRPLVSRYIGEVGDIVVGRVTEVASKRWKVDVNGQQ 109
BLAST of EWM20579.1 vs. NCBI_GenBank
Match: gi|1028573842|gb|OAJ42146.1| (hypothetical protein BDEG_25644 [Batrachochytrium dendrobatidis JEL423]) HSP 1 Score: 86.6557 bits (213), Expect = 9.486e-18 Identity = 44/105 (41.90%), Postives = 64/105 (60.95%), Query Frame = 0 Query: 27 DATVAVPGQVLMEADVDKEGGLSFIRGHGTYQEDAAERGSSVGVESNAGKVRLCAGVAGVIERVNKLVTVVPPNTRYQGAIGDLVVGRVTEVGAKRWKVDLRGHK 131 D + PG+++ + +F+RGHGT+ E+ A L A VAGV+ERVNKL++V P +RY G IGD+VVGR++E+G KRWKVD++G + Sbjct: 36 DRQMVTPGEIITKDS-------AFMRGHGTFTEEQA----------------LVASVAGVVERVNKLISVKPLKSRYNGEIGDVVVGRISELGPKRWKVDIKGRQ 117
BLAST of EWM20579.1 vs. NCBI_GenBank
Match: gi|953493425|emb|CEG44501.1| (exosome complex exonuclease rrp4 [Plasmopara halstedii]) HSP 1 Score: 85.5001 bits (210), Expect = 1.803e-17 Identity = 48/105 (45.71%), Postives = 64/105 (60.95%), Query Frame = 0 Query: 27 DATVAVPGQVLMEADVDKEGGLSFIRGHGTYQEDAAERGSSVGVESNAGKVRLCAGVAGVIERVNKLVTVVPPNTRYQGAIGDLVVGRVTEVGAKRWKVDLRGHK 131 + V PGQV + + G +F+RGHGTY + E L A VAGV+E+VN+L+TV P +RY G +GD+VVGRVTEVG+KRWKVD+ G + Sbjct: 24 ELVVVTPGQV-----ISTDTG-AFLRGHGTYLSNRNE---------------LVASVAGVVEKVNQLITVRPLVSRYIGEVGDIVVGRVTEVGSKRWKVDVNGQQ 107
BLAST of EWM20579.1 vs. NCBI_GenBank
Match: gi|1149598607|gb|OON06258.1| (hypothetical protein BSLG_04037 [Batrachochytrium salamandrivorans]) HSP 1 Score: 85.5001 bits (210), Expect = 2.968e-17 Identity = 52/134 (38.81%), Postives = 75/134 (55.97%), Query Frame = 0 Query: 3 VRVSVIGKRSRDMALPD-NGRAYVPD----ATVAVPGQVLMEADVDKEGGLSFIRGHGTYQEDAAERGSSVGVESNAGKVRLCAGVAGVIERVNKLVTVVPPNTRYQGAIGDLVVGRVTEVGAKRWKVDLRGHK 131 + +SV R R M + D NG + + + V Q++ +V +F+RGHGT+ E+ L A VAGV+ERVNKLV+V P +RY G IGD+VVGR++E+G KRWKVD++G + Sbjct: 2 IDISVPPSRQRTMLMADVNGLSETNNDMEICSTNVERQLVTPGEVITRDS-AFMRGHGTFTEEQT----------------LMASVAGVVERVNKLVSVKPLKSRYNGEIGDVVVGRISELGPKRWKVDIKGRQ 118
BLAST of EWM20579.1 vs. NCBI_GenBank
Match: gi|1072229581|gb|OEU14315.1| (hypothetical protein FRACYDRAFT_188261 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 85.1149 bits (209), Expect = 4.174e-17 Identity = 40/99 (40.40%), Postives = 61/99 (61.62%), Query Frame = 0 Query: 28 ATVAVPGQVLMEADVDKEGGLSFIRGHGTYQEDAAERGSSVGVESNAGKVRLCAGVAGVIERVNKLVTVVPPN-TRYQGAIGDLVVGRVTEVGAKRWKV 125 A + +PGQV+ + + F+RGHGTY E ++ +G + RL + V G+I RVNKL+TV+P N + Y+G +GDLV+GR++ V + RW V Sbjct: 14 AHLVIPGQVIATSSSNNNKSDRFLRGHGTYVESSSNKG---------NEERLISSVCGIIHRVNKLITVIPYNESIYKGNVGDLVIGRISSVSSSRWTV 103
BLAST of EWM20579.1 vs. NCBI_GenBank
Match: gi|1026959537|ref|XP_016611291.1| (hypothetical protein SPPG_02305 [Spizellomyces punctatus DAOM BR117] >gi|907097780|gb|KND03252.1| hypothetical protein SPPG_02305 [Spizellomyces punctatus DAOM BR117]) HSP 1 Score: 84.7297 bits (208), Expect = 4.409e-17 Identity = 50/121 (41.32%), Postives = 68/121 (56.20%), Query Frame = 0 Query: 14 DMAL---PDNGRAYVPDATVAVPGQVLMEADVDKEGGLSFIRGHGTYQEDAAERGSSVGVESNAGKVRLCAGVAGVIERVNKLVTVVPPNTRYQGAIGDLVVGRVTEVGAKRWKVDLRGHK 131 DMA+ D+G ++ PG+V+ +F+RGHGTY ED A L A +AGV++RVNKL++V P TRY G IGD+VVGR+TEVG +RWKVD+ + Sbjct: 17 DMAVDNESDDGNTHI-----VTPGEVVTR-------DTAFMRGHGTYTEDDA----------------LVASMAGVVDRVNKLISVRPLRTRYNGEIGDVVVGRITEVGPRRWKVDINARQ 109 The following BLAST results are available for this feature:
BLAST of EWM20579.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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