rna10102, rna10102 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna10102
Unique Name	rna10102
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1194
Alignment location	KK037262.1:49954..50640 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_101288g1.7671.mrna
Orig protein id	gnl\|cribi\|Naga_101288g1.7671
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037262.1	supercontig	KK037262.1:49954..50640 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101288g1	gene9805	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20602.1	cds10071	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna10102	rna10102-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037262.1:49954..50640-
coding sequence from alignment at KK037262.1:49954..50640-

mRNA sequence

>rna10102 ID=rna10102|Name=rna10102|organism=Nannochloropsis gaditana|type=mRNA|length=1194bp
CCCTCCGCGGGGCAGGTGGCCATGCGGGTGCGACGTCTGATGAGAGGCAA
AGCGTGGTGTGACGGGTGGCGTAGCTGTGGTTGGATTTTTCGGAGCCACA
AGGGGGGAGGGAGGGGGCGTCAGGGCAGTGGTGGGTGGTGGGAAAAGAAA
AAGTGGTTGCCCAGAGCAAGCGACGAGTCAAATACCTGTATATCCCACGA
AAAATAGAGGGGTTGACGCGGGCGGTGATGGCGAGTGCCATGCCATGCAT
CGGGCGGGGGAGGACTCGTGTCGTTGATGTTGGTGTGTAATGATGCATTG
CAATATCAGGCATCATCCCTATTCATGCGGCATACGGGCAAGTTGTGTCC
GTGGTCGAGACATGCCGGGCACGCGTGGCAAGCGCCACAGCACCCTCCCA
CATCATAAAGACGTCGAAGAACGCGTGATTTTGCGAATGTGGAATGTTTC
TGCGCAGGAAGGGGGTGGTTGCGGCATAGTTGCCCGTAGTAAAAGCAGCC
CCCCCCCCCTTTCTGTCTTTCTGCTTTGTGTCCCTCTTTCTTTCTACGCA
CTAAACTTCCTCCCTTTCCCCCCCTTCCCTCTCCCGTTCCCGTACCGCAG
CCACGCCGCCAGCGCACGGCGCCTCCACCCTTTGCCATGTCCTCGCTCCG
GCACGACGACGAGGAAGTGGATTTCGACGAGGAAGGCGAGAGGGGCGGGG
GGGACATCACCTCCTCCCTCGACCCGGAGGGCCATCCCCCTCCTTCCTCC
TCCTCCTCCTACCCGCCCCGGGCCCTGAAAAAACGCAAAAGCGAGGGCCA
GACGTCGTTGCACGTCAAAGGGCGCGGGCACCGAAGCCAAGAGGAGCGCG
GGGAGGGCGGGAGGCCGCCCTCGTTCGAGGTCTTGGGAGGGGAGGGAGGA
GGGGAAGGGGGTGCCGCCAAGTCGATCGAGGGGTGGGTGATAATGGTCAC
GGGCTTGCACGAGGAGGCGCAGGAGGACGAAGTGGTGGACCGTTTCGGGG
AGTTCGGGGAGGTCCGGAACGTGCAGATGAACCTGGACAGACGGACGGGC
TTCGTCAAAGGGTACGCCCTGGTTGAATTCACCTTAAGAAAGGAGGCGGA
GGCAGCGATCGAGGGGATGGAGGGGGAGGAGATGTACGGAAAAGACGTGC
GGGTGGACTGGGCCTTCATGCAGGAGGCATCAGGGCGATGAGGA

protein sequence of rna10102

>rna10102-protein ID=rna10102-protein|Name=rna10102|organism=Nannochloropsis gaditana|type=polypeptide|length=159bp
MGRERDLLPSLPPAFSLLLLLALLPSAHLFVLPSASGACAGGALRRRARR
FHFSLPPPPRTSSLLLPPSPSSLLLPPSPSSLLLPPFPSSLLPRVSYPLP
SSASIALFLPLPSRPSPPLVPSLPPIPPSFPPSLSPSLPFLPLSLPTLPP
SSSPSSQAF

mRNA from alignment at KK037262.1:49954..50640-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna10102 ID=rna10102|Name=rna10102|organism=Nannochloropsis gaditana|type=mRNA|length=687bp|location=Sequence derived from alignment at KK037262.1:49954..50640- (Nannochloropsis gaditana)
GGAGGTCGAGCGAGGCTTAACCCCGCCCTCTCTCCCTCCCACTCCGCAAA
AATAAGCACTCTCACCCCACGCCACGACCCCACACGCGCATTATTCCCAA
GCCAGCGATCGCCGTGTCTGCCAACGACGGGGATCTGCCGGTGATAGCGT
CCTTTGAAGGTCGTGTTGGTTGGGTTGTCGAAAAGTGGTGGTCTTTCCCA
CAGCGAGATGGGGCGTGAACGCGACCTCCTTCCCTCCCTCCCTCCCGCCT
TCTCCCTCCTCCTCCTCCTTGCCCTCCTACCATCCGCCCACCTTTTCGTT
TTGCCTTCGGCATCAGGTGCGTGTGCTGGTGGCGCACTACGTCGGCGTGC
CCGCCGTTTTCATTTTTCCCTCCCCCCTCCTCCCCGAACCTCCTCCCTCC
TTCTTCCTCCCTCCCCCTCCTCCCTCCTTCTTCCTCCCTCCCCCTCCTCC
CTCCTTCTTCCTCCCTTCCCCTCCTCCCTCCTTCCCCGCGTCTCCTACCC
TCTTCCTTCGTCCGCAAGCATCGCCCTCTTTCTTCCCCTCCCCTCCCGCC
CTTCTCCTCCTCTCGTTCCCTCCCTTCCTCCCATCCCTCCCTCTTTCCCT
CCCTCCCTCTCTCCCTCCCTACCCTTCCTCCCTCTCTCCCTCCCTACCCT
CCCTCCCTCCTCCTCTCCCTCCTCCCAGGCCTTCTGA

Coding sequence (CDS) from alignment at KK037262.1:49954..50640-

>rna10102 ID=rna10102|Name=rna10102|organism=Nannochloropsis gaditana|type=CDS|length=480bp|location=Sequence derived from alignment at KK037262.1:49954..50640- (Nannochloropsis gaditana)
ATGGGGCGTGAACGCGACCTCCTTCCCTCCCTCCCTCCCGCCTTCTCCCT
CCTCCTCCTCCTTGCCCTCCTACCATCCGCCCACCTTTTCGTTTTGCCTT
CGGCATCAGGTGCGTGTGCTGGTGGCGCACTACGTCGGCGTGCCCGCCGT
TTTCATTTTTCCCTCCCCCCTCCTCCCCGAACCTCCTCCCTCCTTCTTCC
TCCCTCCCCCTCCTCCCTCCTTCTTCCTCCCTCCCCCTCCTCCCTCCTTC
TTCCTCCCTTCCCCTCCTCCCTCCTTCCCCGCGTCTCCTACCCTCTTCCT
TCGTCCGCAAGCATCGCCCTCTTTCTTCCCCTCCCCTCCCGCCCTTCTCC
TCCTCTCGTTCCCTCCCTTCCTCCCATCCCTCCCTCTTTCCCTCCCTCCC
TCTCTCCCTCCCTACCCTTCCTCCCTCTCTCCCTCCCTACCCTCCCTCCC
TCCTCCTCTCCCTCCTCCCAGGCCTTCTGA

Synonyms

Publications