EWM20625.1, cds10049 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM20625.1
Unique Name	cds10049
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	KK037261.1:90610..90652 +
Alignment location	KK037261.1:90776..90937 +
Alignment location	KK037261.1:90993..91144 +
Alignment location	KK037261.1:91478..91651 +

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM20625.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100692g5.780.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037261.1	supercontig	KK037261.1:90610..90652 +
KK037261.1	supercontig	KK037261.1:90776..90937 +
KK037261.1	supercontig	KK037261.1:90993..91144 +
KK037261.1	supercontig	KK037261.1:91478..91651 +

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

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BLAST of EWM20625.1 vs. NCBI_GenBank
Match: gi|585100402|gb|EWM20625.1| (hypothetical protein Naga_100692g5 [Nannochloropsis gaditana])

HSP 1 Score: 366.696 bits (940), Expect = 1.885e-128
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0

Query:    1 MCIYTKLGCGLASVAYPKANNLNVTGICAVDLSGPGTRDRMLITNALSPVSFATDTRLKEIFFGCEQKVGLSYISLAKPMRTGHAYREMASYVPPYVLISGGVVKRPRARQAWWPRTSGVCKTSGLRGEHERGNLEILWTATDKPQVVWILSINLCKSTARWASCEEKDAQVFLNG 176
            MCIYTKLGCGLASVAYPKANNLNVTGICAVDLSGPGTRDRMLITNALSPVSFATDTRLKEIFFGCEQKVGLSYISLAKPMRTGHAYREMASYVPPYVLISGGVVKRPRARQAWWPRTSGVCKTSGLRGEHERGNLEILWTATDKPQVVWILSINLCKSTARWASCEEKDAQVFLNG
Sbjct:    1 MCIYTKLGCGLASVAYPKANNLNVTGICAVDLSGPGTRDRMLITNALSPVSFATDTRLKEIFFGCEQKVGLSYISLAKPMRTGHAYREMASYVPPYVLISGGVVKRPRARQAWWPRTSGVCKTSGLRGEHERGNLEILWTATDKPQVVWILSINLCKSTARWASCEEKDAQVFLNG 176

The following BLAST results are available for this feature:

BLAST of EWM20625.1 vs. NCBI_GenBank

BLAST of EWM20625.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585100402\|gb\|EWM20625.1\|	1.885e-128	100.00	hypothetical protein Naga_100692g5 [Nannochloropsi...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna10080	rna10080	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications