rna10080, rna10080 (mRNA) Nannochloropsis gaditana

Overview
Namerna10080
Unique Namerna10080
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length306
Alignment locationKK037261.1:90610..91651 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100692g5.780.mrna
Orig protein idgnl|cribi|Naga_100692g5.780
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037261.1supercontigKK037261.1:90610..91651 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100692g5gene9782Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10080rna10080-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20625.1cds10049Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10080 ID=rna10080|Name=rna10080|organism=Nannochloropsis gaditana|type=mRNA|length=306bp
ATGATGGCACTGTCAAGTCCTCTGACTCGATGCCGTAGGAGGTCGCTATG
CCGGGGTACTGGGCCACCTGGATGCTTGCCTAGGCCGGCGCCCCCGTCGA
TGAAGACGCTGTCCTTGCCCAGGCCGCACTGCGAGATCATCGCATCCTCC
ACTCTCTGCATGCTACGTGAGGTCAGCTTGCCGAAGATGACCTGTTGGTG
TCGTTGCGGGGGGGGGGAGGTGGGGGGATGGGTGAGCAAGGGGCTACTTA
ATGTTGTAGGCGGTCGAGACGTAGGGGGCACACTCCTGTGGGTTGGGCGT
GCATGA
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protein sequence of rna10080

>rna10080-protein ID=rna10080-protein|Name=rna10080|organism=Nannochloropsis gaditana|type=polypeptide|length=176bp
MCIYTKLGCGLASVAYPKANNLNVTGICAVDLSGPGTRDRMLITNALSPV
SFATDTRLKEIFFGCEQKVGLSYISLAKPMRTGHAYREMASYVPPYVLIS
GGVVKRPRARQAWWPRTSGVCKTSGLRGEHERGNLEILWTATDKPQVVWI
LSINLCKSTARWASCEEKDAQVFLNG
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mRNA from alignment at KK037261.1:90610..91651+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10080 ID=rna10080|Name=rna10080|organism=Nannochloropsis gaditana|type=mRNA|length=1042bp|location=Sequence derived from alignment at KK037261.1:90610..91651+ (Nannochloropsis gaditana)
ATGTGCATTTATACGAAGTTAGGCTGTGGTTTAGCCAGCGTTGGTATCAA
CCGAGTTCCATCACCACGCCTGAGCCCGATGCCAACGCTGTAAAGAGCCT
TTCCTATGAGACCCGCCCAGGCGCTGTGATGGTATTCGGATGATACCAAC
GCTGGCCTCACCACAGCTTACCCTAAGGCCAACAATTTAAACGTAACCGG
CATATGTGCTGTCGATCTTAGTGGTCCTGGAACAAGGGACAGGATGTTAA
TTACAAATGCACTGAGTCCAGTTTCCTTTGCGACGGATACTCGTCTTAAG
GAAATTTTTTTTGGGTGTGAACAAaaaggtggaaaaggaggataTGCATG
ATTACATAAGTCTGTCGAAGTGACCGTCAATAGTTGGTCTCAGCTACATC
TCTTTAGCCAAACCAATGAGGACGGGGCACGCGTACCGGGAAATGGCGTC
GTACGTTCCCCCCTACGTCCTCATCAGTGGGGGCGTGGTCAAGCGACCGC
GAGCTCGGCAGGCGTGGTGGCCGCGCACAAGCGGCGTAAGGCTCACAACA
GCCTCTCCATCTGCATGTAATAAAAGGGACTGACAGAATGGAAGTTTACC
CACCTtgtgatttttttttcctccagcaGTTAGACATGATGTTTCCTTTG
AACTTTCCCTCCAATCCAAACAATAATCCTAGATGTTGAGCTCCTCCAAA
GAGCttgatgctgctgctttcaTAATGCACAGACAGCCCTTAATCGGAAA
GCTGACGTAGTCTTTGTGCAATCTCATGGACCCCTACGCGACGGTTGAAC
acgagaaaaggaaagatcTTCCGTCGCGTGCAAATCAGACTCTTGAAGGC
GCTTTATGGCCCTCGCAGGTCTGTAAAACGTCGGGGTTGCGCGGGGAGCA
TGAGCGTGGAAACCTCGAGATTCTTTGGACGGCGACAGATAAACCACAAG
TTGTATGGATACTTTCGATTAATCTATGTAAAAGCACGGCAAGATGGGCG
TCGTGTGAAGAAAAGGATGCTCAAGTGTTCCTCAATGGATAA
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Coding sequence (CDS) from alignment at KK037261.1:90610..91651+

>rna10080 ID=rna10080|Name=rna10080|organism=Nannochloropsis gaditana|type=CDS|length=2124bp|location=Sequence derived from alignment at KK037261.1:90610..91651+ (Nannochloropsis gaditana)
ATGTGCATTTATACGAAGTTAGGCTGTGGTTTAGCCAGCGTTGCTTACCC
TAAGGCCAACAATTTAAACGTAACCGGCATATGTGCTGTCGATCTTAGTG
GTCCTGGAACAAGGGACAGGATGTTAATTACAAATGCACTGAGTCCAGTT
TCCTTTGCGACGGATACTCGTCTTAAGGAAATTTTTTTTGGGTGTGAACA
AaaagTTGGTCTCAGCTACATCTCTTTAGCCAAACCAATGAGGACGGGGC
ACGCGTACCGGGAAATGGCGTCGTACGTTCCCCCCTACGTCCTCATCAGT
GGGGGCGTGGTCAAGCGACCGCGAGCTCGGCAGGCGTGGTGGCCGCGCAC
AAGCGGCGTCTGTAAAACGTCGGGGTTGCGCGGGGAGCATGAGCGTGGAA
ACCTCGAGATTCTTTGGACGGCGACAGATAAACCACAAGTTGTATGGATA
CTTTCGATTAATCTATGTAAAAGCACGGCAAGATGGGCGTCGTGTGAAGA
AAAGGATGCTCAAGTGTTCCTCAATGGATAAATGTGCATTTATACGAAGT
TAGGCTGTGGTTTAGCCAGCGTTGCTTACCCTAAGGCCAACAATTTAAAC
GTAACCGGCATATGTGCTGTCGATCTTAGTGGTCCTGGAACAAGGGACAG
GATGTTAATTACAAATGCACTGAGTCCAGTTTCCTTTGCGACGGATACTC
GTCTTAAGGAAATTTTTTTTGGGTGTGAACAAaaagTTGGTCTCAGCTAC
ATCTCTTTAGCCAAACCAATGAGGACGGGGCACGCGTACCGGGAAATGGC
GTCGTACGTTCCCCCCTACGTCCTCATCAGTGGGGGCGTGGTCAAGCGAC
CGCGAGCTCGGCAGGCGTGGTGGCCGCGCACAAGCGGCGTCTGTAAAACG
TCGGGGTTGCGCGGGGAGCATGAGCGTGGAAACCTCGAGATTCTTTGGAC
GGCGACAGATAAACCACAAGTTGTATGGATACTTTCGATTAATCTATGTA
AAAGCACGGCAAGATGGGCGTCGTGTGAAGAAAAGGATGCTCAAGTGTTC
CTCAATGGATAAATGTGCATTTATACGAAGTTAGGCTGTGGTTTAGCCAG
CGTTGCTTACCCTAAGGCCAACAATTTAAACGTAACCGGCATATGTGCTG
TCGATCTTAGTGGTCCTGGAACAAGGGACAGGATGTTAATTACAAATGCA
CTGAGTCCAGTTTCCTTTGCGACGGATACTCGTCTTAAGGAAATTTTTTT
TGGGTGTGAACAAaaagTTGGTCTCAGCTACATCTCTTTAGCCAAACCAA
TGAGGACGGGGCACGCGTACCGGGAAATGGCGTCGTACGTTCCCCCCTAC
GTCCTCATCAGTGGGGGCGTGGTCAAGCGACCGCGAGCTCGGCAGGCGTG
GTGGCCGCGCACAAGCGGCGTCTGTAAAACGTCGGGGTTGCGCGGGGAGC
ATGAGCGTGGAAACCTCGAGATTCTTTGGACGGCGACAGATAAACCACAA
GTTGTATGGATACTTTCGATTAATCTATGTAAAAGCACGGCAAGATGGGC
GTCGTGTGAAGAAAAGGATGCTCAAGTGTTCCTCAATGGATAAATGTGCA
TTTATACGAAGTTAGGCTGTGGTTTAGCCAGCGTTGCTTACCCTAAGGCC
AACAATTTAAACGTAACCGGCATATGTGCTGTCGATCTTAGTGGTCCTGG
AACAAGGGACAGGATGTTAATTACAAATGCACTGAGTCCAGTTTCCTTTG
CGACGGATACTCGTCTTAAGGAAATTTTTTTTGGGTGTGAACAAaaagTT
GGTCTCAGCTACATCTCTTTAGCCAAACCAATGAGGACGGGGCACGCGTA
CCGGGAAATGGCGTCGTACGTTCCCCCCTACGTCCTCATCAGTGGGGGCG
TGGTCAAGCGACCGCGAGCTCGGCAGGCGTGGTGGCCGCGCACAAGCGGC
GTCTGTAAAACGTCGGGGTTGCGCGGGGAGCATGAGCGTGGAAACCTCGA
GATTCTTTGGACGGCGACAGATAAACCACAAGTTGTATGGATACTTTCGA
TTAATCTATGTAAAAGCACGGCAAGATGGGCGTCGTGTGAAGAAAAGGAT
GCTCAAGTGTTCCTCAATGGATAA
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Synonyms
Publications