EWM20631.1, cds10041 (CDS) Nannochloropsis gaditana

Overview
NameEWM20631.1
Unique Namecds10041
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037261.1:72200..72211 -
Alignment locationKK037261.1:71850..71996 -
Alignment locationKK037261.1:71554..71659 -
Alignment locationKK037261.1:71037..71415 -

Link to JBrowse

Properties
Property NameValue
Start range71037
Start range.
Protein idEWM20631.1
Productadp-ribosylation factor gtpase-activating protein agd12
Partialtrue
Orig transcript idgnl|cribi|Naga_100873g1.2862.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037261.1supercontigKK037261.1:72200..72211 -
KK037261.1supercontigKK037261.1:71850..71996 -
KK037261.1supercontigKK037261.1:71554..71659 -
KK037261.1supercontigKK037261.1:71037..71415 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0030234enzyme regulator activity
GO:0005096GTPase activator activity
Vocabulary: INTERPRO
TermDefinition
IPR001164ArfGAP
Homology
BLAST of EWM20631.1 vs. NCBI_GenBank
Match: gi|585100417|gb|EWM20631.1| (adp-ribosylation factor gtpase-activating protein agd12, partial [Nannochloropsis gaditana])

HSP 1 Score: 432.95 bits (1112), Expect = 1.569e-153
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 0
Query:    1 MAAQARELLRLLRLPSNRSCADCDAPLNDSTNVWASITHGVFVCVTCVSVHRRVGTHISRVRSVNLDVWTEEETACMRELSGNGGNVYVNSIYERYLPRGCVKPSPDAAFEEREMWIRAKYEHKVRLLPFHHFFPPSCVPIVAFYPRSSIAACPSSLPAPFPPSLPPSLPLCFIPETSSSSPSDAHTDNATLPPSLPLPLPSFSASPSHSQAFT 214
            MAAQARELLRLLRLPSNRSCADCDAPLNDSTNVWASITHGVFVCVTCVSVHRRVGTHISRVRSVNLDVWTEEETACMRELSGNGGNVYVNSIYERYLPRGCVKPSPDAAFEEREMWIRAKYEHKVRLLPFHHFFPPSCVPIVAFYPRSSIAACPSSLPAPFPPSLPPSLPLCFIPETSSSSPSDAHTDNATLPPSLPLPLPSFSASPSHSQAFT
Sbjct:    1 MAAQARELLRLLRLPSNRSCADCDAPLNDSTNVWASITHGVFVCVTCVSVHRRVGTHISRVRSVNLDVWTEEETACMRELSGNGGNVYVNSIYERYLPRGCVKPSPDAAFEEREMWIRAKYEHKVRLLPFHHFFPPSCVPIVAFYPRSSIAACPSSLPAPFPPSLPPSLPLCFIPETSSSSPSDAHTDNATLPPSLPLPLPSFSASPSHSQAFT 214          
BLAST of EWM20631.1 vs. NCBI_GenBank
Match: gi|743858957|ref|XP_010942504.1| (PREDICTED: ADP-ribosylation factor GTPase-activating protein AGD12 [Elaeis guineensis] >gi|743858959|ref|XP_010942505.1| PREDICTED: ADP-ribosylation factor GTPase-activating protein AGD12 [Elaeis guineensis] >gi|1130621167|ref|XP_019701370.1| PREDICTED: ADP-ribosylation factor GTPase-activating protein AGD12 [Elaeis guineensis])

HSP 1 Score: 130.183 bits (326), Expect = 5.903e-33
Identity = 67/135 (49.63%), Postives = 83/135 (61.48%), Query Frame = 0
Query:    3 AQARELLRLLRLPSNRSCADCDAPLNDSTNVWASITHGVFVCVTCVSVHRRVGTHISRVRSVNLDVWTEEETACMRELSGNGGNVYVNSIYERYLPRGCVKPSPDAAFEEREMWIRAKYEHKVRLLPFHHFFPPS 137
            A  R+L  LL +  NR CADC AP       WAS   GVF+C+ C  VHR +GTHIS+V SV+LD WTE+E   M E+   GGN Y N+IYE +LP+G  KP+PDA+ EER  +IR+KYE          F  PS
Sbjct:   10 ASVRKLKELLHIRDNRFCADCGAP----DPKWASANIGVFICLKCCGVHRSLGTHISKVLSVSLDEWTEDEIESMLEV---GGNSYANAIYEAFLPQGYSKPNPDASHEERTKFIRSKYE-------LQEFLKPS 130          
BLAST of EWM20631.1 vs. NCBI_GenBank
Match: gi|672141770|ref|XP_008794724.1| (PREDICTED: ADP-ribosylation factor GTPase-activating protein AGD12-like isoform X2 [Phoenix dactylifera] >gi|672141772|ref|XP_008794725.1| PREDICTED: ADP-ribosylation factor GTPase-activating protein AGD12-like isoform X2 [Phoenix dactylifera])

HSP 1 Score: 129.028 bits (323), Expect = 1.631e-32
Identity = 66/135 (48.89%), Postives = 84/135 (62.22%), Query Frame = 0
Query:    3 AQARELLRLLRLPSNRSCADCDAPLNDSTNVWASITHGVFVCVTCVSVHRRVGTHISRVRSVNLDVWTEEETACMRELSGNGGNVYVNSIYERYLPRGCVKPSPDAAFEEREMWIRAKYEHKVRLLPFHHFFPPS 137
            A  R+L  LL +  NR CADC AP       WAS   GVF+C+ C +VHR +GTHIS+V SV+LD WTE+E   M E+   GGN Y N+IYE +LP+G  KP+PD++ EER  +IR+KYE          F  PS
Sbjct:   10 ASVRKLKELLHIRDNRFCADCGAP----DPKWASANIGVFICLKCCAVHRSLGTHISKVLSVSLDEWTEDEIESMLEV---GGNSYANAIYEAFLPQGYSKPNPDSSHEERAKFIRSKYE-------LQEFLKPS 130          
BLAST of EWM20631.1 vs. NCBI_GenBank
Match: gi|1117398133|ref|XP_019464168.1| (PREDICTED: ADP-ribosylation factor GTPase-activating protein AGD12-like [Lupinus angustifolius] >gi|1117398138|ref|XP_019464169.1| PREDICTED: ADP-ribosylation factor GTPase-activating protein AGD12-like [Lupinus angustifolius] >gi|1117398144|ref|XP_019464170.1| PREDICTED: ADP-ribosylation factor GTPase-activating protein AGD12-like [Lupinus angustifolius])

HSP 1 Score: 128.642 bits (322), Expect = 2.337e-32
Identity = 76/179 (42.46%), Postives = 93/179 (51.96%), Query Frame = 0
Query:    2 AAQARELLRLLRLPSNRSCADCDAPLNDSTNVWASITHGVFVCVTCVSVHRRVGTHISRVRSVNLDVWTEEETACMRELSGNGGNVYVNSIYERYLPRGCVKPSPDAAFEEREMWIRAKYEHKVRLLPFHHFFPPSCVPIVAFYPRSSIAACPSSLPAPFPPSLPPSLPLCFIPETSSS 180
            A+  R +  LL    NR CADC+AP       WAS   GVFVC+ C  VHR +GTHIS++ SV LD W+EEE   M E+   GGN   NSIYE YLP G  KP+ DA+ E+R  +IR+KYEH+        F  PS            ++   SS    F  S    L   F   TSSS
Sbjct:   14 ASGKRRMKDLLLHKDNRFCADCNAP----DPKWASANIGVFVCLKCCGVHRSLGTHISKINSVTLDEWSEEEIDAMIEV---GGNASANSIYEAYLPEGYTKPASDASHEQRAKFIRSKYEHQ-------EFLKPSL---------RIVSGKSSSHKNTFKASFSKRLMDSFRKSTSSS 169          
BLAST of EWM20631.1 vs. NCBI_GenBank
Match: gi|255634646|gb|ACU17685.1| (unknown, partial [Glycine max])

HSP 1 Score: 126.716 bits (317), Expect = 2.788e-32
Identity = 66/136 (48.53%), Postives = 80/136 (58.82%), Query Frame = 0
Query:    2 AAQARELLRLLRLPSNRSCADCDAPLNDSTNVWASITHGVFVCVTCVSVHRRVGTHISRVRSVNLDVWTEEETACMRELSGNGGNVYVNSIYERYLPRGCVKPSPDAAFEEREMWIRAKYEHKVRLLPFHHFFPPS 137
            A+  R+L  LL    NR CADC+AP       WAS   GVF+C+ C  VHR +GTHIS+V SV LD W+E+E   M E+   GGNV  NSIYE Y+P G  KP PDA  E+R  +IR+KYE          F  PS
Sbjct:    7 ASSRRKLKDLLHQSGNRLCADCNAP----DPKWASANIGVFICLKCCGVHRSLGTHISKVLSVTLDDWSEDEIDAMTEV---GGNVSANSIYEAYIPEGYTKPGPDAGHEQRSKFIRSKYE-------LQEFLKPS 128          
BLAST of EWM20631.1 vs. NCBI_GenBank
Match: gi|672141766|ref|XP_008794722.1| (PREDICTED: ADP-ribosylation factor GTPase-activating protein AGD12-like isoform X1 [Phoenix dactylifera] >gi|672141768|ref|XP_008794723.1| PREDICTED: ADP-ribosylation factor GTPase-activating protein AGD12-like isoform X1 [Phoenix dactylifera])

HSP 1 Score: 128.642 bits (322), Expect = 3.204e-32
Identity = 66/135 (48.89%), Postives = 84/135 (62.22%), Query Frame = 0
Query:    3 AQARELLRLLRLPSNRSCADCDAPLNDSTNVWASITHGVFVCVTCVSVHRRVGTHISRVRSVNLDVWTEEETACMRELSGNGGNVYVNSIYERYLPRGCVKPSPDAAFEEREMWIRAKYEHKVRLLPFHHFFPPS 137
            A  R+L  LL +  NR CADC AP       WAS   GVF+C+ C +VHR +GTHIS+V SV+LD WTE+E   M E+   GGN Y N+IYE +LP+G  KP+PD++ EER  +IR+KYE          F  PS
Sbjct:   33 ASVRKLKELLHIRDNRFCADCGAP----DPKWASANIGVFICLKCCAVHRSLGTHISKVLSVSLDEWTEDEIESMLEV---GGNSYANAIYEAFLPQGYSKPNPDSSHEERAKFIRSKYE-------LQEFLKPS 153          
BLAST of EWM20631.1 vs. NCBI_GenBank
Match: gi|593693922|ref|XP_007147482.1| (hypothetical protein PHAVU_006G128200g [Phaseolus vulgaris] >gi|593693924|ref|XP_007147483.1| hypothetical protein PHAVU_006G128200g [Phaseolus vulgaris] >gi|561020705|gb|ESW19476.1| hypothetical protein PHAVU_006G128200g [Phaseolus vulgaris] >gi|561020706|gb|ESW19477.1| hypothetical protein PHAVU_006G128200g [Phaseolus vulgaris])

HSP 1 Score: 127.872 bits (320), Expect = 3.767e-32
Identity = 66/136 (48.53%), Postives = 80/136 (58.82%), Query Frame = 0
Query:    2 AAQARELLRLLRLPSNRSCADCDAPLNDSTNVWASITHGVFVCVTCVSVHRRVGTHISRVRSVNLDVWTEEETACMRELSGNGGNVYVNSIYERYLPRGCVKPSPDAAFEEREMWIRAKYEHKVRLLPFHHFFPPS 137
            A+  R+L  LL    NR CADC+AP       WAS   GVF+C+ C  VHR +GTHIS+V SV LD W+E+E   M E+   GGN   NSIYE Y+P G  KP PDA  E+R  +IR+KYE       F  F  PS
Sbjct:    7 ASSRRKLKDLLLQKDNRCCADCNAP----DPKWASANIGVFICLKCCGVHRSLGTHISKVLSVTLDEWSEDEIDAMMEV---GGNASANSIYEAYIPEGLTKPEPDAGHEQRSKFIRSKYE-------FQEFLKPS 128          
BLAST of EWM20631.1 vs. NCBI_GenBank
Match: gi|1175869783|ref|XP_020588600.1| (ADP-ribosylation factor GTPase-activating protein AGD12-like isoform X2 [Phalaenopsis equestris])

HSP 1 Score: 127.102 bits (318), Expect = 9.269e-32
Identity = 64/136 (47.06%), Postives = 83/136 (61.03%), Query Frame = 0
Query:    2 AAQARELLRLLRLPSNRSCADCDAPLNDSTNVWASITHGVFVCVTCVSVHRRVGTHISRVRSVNLDVWTEEETACMRELSGNGGNVYVNSIYERYLPRGCVKPSPDAAFEEREMWIRAKYEHKVRLLPFHHFFPPS 137
            +   ++L  LL    NR CADC AP       WAS+  GVFVCV C  VHR +GTHIS+V SV LD W++EE   + E+   GGN Y NSIYE +LP+  +KP+ D+++EER  +IR+KYE       F  F  PS
Sbjct:   12 SGNKKQLKELLHKSDNRICADCSAP----DPKWASVNIGVFVCVQCCGVHRSLGTHISKVLSVTLDEWSDEEIQSVIEV---GGNSYANSIYEAFLPQNFLKPTTDSSYEERAKFIRSKYE-------FQDFLKPS 133          
BLAST of EWM20631.1 vs. NCBI_GenBank
Match: gi|1175869776|ref|XP_020588597.1| (ADP-ribosylation factor GTPase-activating protein AGD12-like isoform X1 [Phalaenopsis equestris] >gi|1175869780|ref|XP_020588599.1| ADP-ribosylation factor GTPase-activating protein AGD12-like isoform X1 [Phalaenopsis equestris])

HSP 1 Score: 126.716 bits (317), Expect = 1.255e-31
Identity = 64/135 (47.41%), Postives = 83/135 (61.48%), Query Frame = 0
Query:    3 AQARELLRLLRLPSNRSCADCDAPLNDSTNVWASITHGVFVCVTCVSVHRRVGTHISRVRSVNLDVWTEEETACMRELSGNGGNVYVNSIYERYLPRGCVKPSPDAAFEEREMWIRAKYEHKVRLLPFHHFFPPS 137
            +  ++L  LL    NR CADC AP       WAS+  GVFVCV C  VHR +GTHIS+V SV LD W++EE   + E+   GGN Y NSIYE +LP+  +KP+ D+++EER  +IR+KYE       F  F  PS
Sbjct:   15 SNKKQLKELLHKSDNRICADCSAP----DPKWASVNIGVFVCVQCCGVHRSLGTHISKVLSVTLDEWSDEEIQSVIEV---GGNSYANSIYEAFLPQNFLKPTTDSSYEERAKFIRSKYE-------FQDFLKPS 135          
BLAST of EWM20631.1 vs. NCBI_GenBank
Match: gi|1142824144|gb|AQK82231.1| (Putative calcium-dependent lipid-binding (CaLB domain) family protein [Zea mays])

HSP 1 Score: 122.094 bits (305), Expect = 1.599e-31
Identity = 63/125 (50.40%), Postives = 80/125 (64.00%), Query Frame = 0
Query:    5 ARELLRLLRLPSNRSCADCDAPLNDSTNVWASITHGVFVCVTCVSVHRRVGTHISRVRSVNLDVWTEEETACMRELSGNGGNVYVNSIYERYLPRGCVKPSPDAAFEEREMWIRAKYEHKVRLLP 129
            AR+L  LL+   NR CADC AP       WAS   GVF+C+ C  VHR +GTH+S+V SV LD WT++E   M E+   GGN Y N+IYE +LP G  KP PD++ EER  +IR+KYE +  L P
Sbjct:    2 ARKLRELLQKSGNRVCADCGAP----DPKWASANIGVFICLKCSGVHRSLGTHVSKVLSVTLDQWTDDEINSMIEV---GGNSYANAIYEAFLPEGYQKPHPDSSQEERADFIRSKYELQEFLKP 119          
The following BLAST results are available for this feature:
BLAST of EWM20631.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100417|gb|EWM20631.1|1.569e-153100.00adp-ribosylation factor gtpase-activating protein ... [more]
gi|743858957|ref|XP_010942504.1|5.903e-3349.63PREDICTED: ADP-ribosylation factor GTPase-activati... [more]
gi|672141770|ref|XP_008794724.1|1.631e-3248.89PREDICTED: ADP-ribosylation factor GTPase-activati... [more]
gi|1117398133|ref|XP_019464168.1|2.337e-3242.46PREDICTED: ADP-ribosylation factor GTPase-activati... [more]
gi|255634646|gb|ACU17685.1|2.788e-3248.53unknown, partial [Glycine max][more]
gi|672141766|ref|XP_008794722.1|3.204e-3248.89PREDICTED: ADP-ribosylation factor GTPase-activati... [more]
gi|593693922|ref|XP_007147482.1|3.767e-3248.53hypothetical protein PHAVU_006G128200g [Phaseolus ... [more]
gi|1175869783|ref|XP_020588600.1|9.269e-3247.06ADP-ribosylation factor GTPase-activating protein ... [more]
gi|1175869776|ref|XP_020588597.1|1.255e-3147.41ADP-ribosylation factor GTPase-activating protein ... [more]
gi|1142824144|gb|AQK82231.1|1.599e-3150.40Putative calcium-dependent lipid-binding (CaLB dom... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10072rna10072Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications