rna10072, rna10072 (mRNA) Nannochloropsis gaditana

Overview
Namerna10072
Unique Namerna10072
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1329
Alignment locationKK037261.1:71037..72297 -

Link to JBrowse

Properties
Property NameValue
Productadp-ribosylation factor gtpase-activating protein agd12
Orig transcript idgnl|cribi|Naga_100873g1.2862.mrna
Orig protein idgnl|cribi|Naga_100873g1.2862
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037261.1supercontigKK037261.1:71037..72297 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100873g1gene9773Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10072rna10072-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20631.1cds10041Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10072 ID=rna10072|Name=rna10072|organism=Nannochloropsis gaditana|type=mRNA|length=1329bp
ATGCAGGTCAGTAACCATTTCCATCCCTTGACTGGCTCTTCCCCCTCCTG
CTCTCCCTCCTTCTCTCCCTCCAACAGTCGGCCGCCCAAGCGAAGCTTCC
TATGCGTCTCGTCGATCTCCTGGTGGTCGTGGGCATGGACGAGGAGGAGG
TGCCGCGGGAGGACGGGAGGGAGGGCGGGACAGAGGGGGGTGAAGGGGCA
GGTCGTGGGAAGACTTCGCCTCAGGAGATTTCCTAATCCTTCCTGTCTTC
TTCCCCTACAGGCCATGCTCACCCACGTCCCTTCGTCCTCCTCCGCCTCC
TCCTCCCAGCCTGTCTTTTCCTTCACCTCCTCCTTCGCCGCCTCCCCCTC
CCCGCAGAAGAGCCGCAGCCTCACGCAACTCCCCTCCCTCCCTCCCTCCC
TCGCTTCCCCCTCCACCGGCATTCTTCCCAACGATTCTCAAGCCTCTTTG
ACCTCCTTATCCTCTCCCTCCTCCACCACCCGCTCCCTCGCCGCCCTCCC
CTCCTTCCAGCCCTCCTCCCCCTGCCCCTCCCTGCCCCTTACCTCCCCGA
CCTCCTTCCCGCCCTCCCTCCCTCCCTCCCTGGCCCCCGACGAGACCCAC
ATGGCCTGCAAGGTCCTGGATGCCTACCCCACGGCGAGCCACTACGCCCA
GGGAGAAGGAAAGGAGGCGGTAAAGGTGCCGGACCACGTGGCGCAGTTCG
TGTATCCCGATGGCTTCTCCCTCCGCGCAGAGGAAGCCCCCCCCTCCTTC
TTCTCCTTCGTCCTCACGGACATGGACGGCACTCGCACCTACGGCTGCGT
CCTCCACCTGTGTGAGGAGGTCTCGACCCTCCCCCACCCCGCCAAGACCC
AAACCGCCCTCGGTCGCGCCTTCCAGGAGGCTGGGCTTCCCCTTCCCTCG
TGGGTGCAGTCAGGAAACTTCTTCGTCCCGAAGGCCCTTGTCATCCTGTC
GCACTACCCCTTCTTCAACACCTTTCGAGAGGTAGGCCCGCAGGCGTCGA
GAAGGGATCTTTCCTTCCTCTTCTTGATTCCTGCTTTCATCCCACCCTCC
GCCCTTCCCTCCATCCCGTTCTCCCTCAGGTCCTCCTTGAGCTCTACCGC
ATCTCCATCTCCTCTGCTCCCCTCCCCATCGAGCGCTACATCGCCAATTT
TTTCTGCGAAGTGCCCTTGCCCCCCCAGGTGAGAAACATCAACGAGAGCG
AGACGAGGGGATGAGAGACGTCTGGAAACGATCACGCGTGCATCAGGAGC
TGGCCCTCAACACTGTGGTATTCTTAGAGCAAGAATGGCGCGTTTTCCTT
CTCTACAACGCCTCCATCCTTACCCCTCA
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protein sequence of rna10072

>rna10072-protein ID=rna10072-protein|Name=rna10072|organism=Nannochloropsis gaditana|type=polypeptide|length=214bp
MAAQARELLRLLRLPSNRSCADCDAPLNDSTNVWASITHGVFVCVTCVSV
HRRVGTHISRVRSVNLDVWTEEETACMRELSGNGGNVYVNSIYERYLPRG
CVKPSPDAAFEEREMWIRAKYEHKVRLLPFHHFFPPSCVPIVAFYPRSSI
AACPSSLPAPFPPSLPPSLPLCFIPETSSSSPSDAHTDNATLPPSLPLPL
PSFSASPSHSQAFT
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mRNA from alignment at KK037261.1:71037..72297-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10072 ID=rna10072|Name=rna10072|organism=Nannochloropsis gaditana|type=mRNA|length=1261bp|location=Sequence derived from alignment at KK037261.1:71037..72297- (Nannochloropsis gaditana)
GGAGAATAATAGTTTAAGACGCACCCTCTCCCTGCATCCGGTGAGCCAGG
TGCCTACACGGATCGCGAGACCTACTTTTGGGAACGATGGCAGCCCAGGT
AATGGTATTTCTTCTCCCCTTCATTCTACATCGTATTCCTGTCCTTTTAT
TTGCTTGTATGTTGCCAATTACGGTTTGACAAGGTTCTGGATTCCTCTTT
GACGCTATATAGCATGATGTCTTCTTCATGAATGCTGGATTAATGTCTCC
TAAAAACACGTCCTCTTCTACTTCCGTCTTTGTACGGCTCCCGTGTCACA
GGCCCGAGAGCTATTGAGGCTATTACGTTTGCCTTCCAATCGCAGTTGTG
CCGACTGCGACGCCCCTCTCAACGACAGCACCAACGTTTGGGCTAGCATA
ACCCACGGCGTGTTCGTTTGTGTGACATGTGTCTCTGTCCATCGGAGGGT
AGGTGGTGGGAGGATATAGATGGATGTCGGACATGGGCAGGGAACAGACA
TCCCAAGTGCCAAATCGTAAAATCAGGATCCTCTGGTGGTGGGCCTGGCT
GGACGCCTTGAGATCTCCACACTGCTCAATGATTCACTCGCCTCCCTCTC
CTTCATCTTCATTCCGCTATATCTACTATTTGGTCTAGGTGGGCACTCAT
ATCTCCCGCGTACGCTCGGTGAACCTGGATGTGTGGACCGAGGAGGAGAC
TGCCTGTATGCGAGAGCTCTCGGGGAATGGGGGCAATGTCTACGGTGAGG
GGGATGAGGAAGGAGGGGAAGAAGGAAGTAAGGAGACGAGCGACAGGAGT
TTTTGCTTGCTTGGAGACCACTGATGGCAACATTTCATTTATTCCCTCCC
TCCCTCCCTCCCTCCCTCCCCTCCCTTTGCAGTCAACTCCATCTACGAGC
GCTACCTCCCCCGGGGCTGTGTCAAACCTTCCCCCGACGCCGCCTTCGAG
GAGCGGGAGATGTGGATACGTGCCAAATACGAGCACAAGGTGCGTCTTCT
GCCTTTCCACCATTTTTTTCCTCCCTCCTGCGTCCCCATCGTCGCCTTTT
ACCCTCGCAGCTCCATCGCAGCCTGTCCTTCCTCCCTTCCTGCCCCGTTC
CCTCCCTCCCTCCCTCCTTCCCTCCCTCTGTGCTTCATCCCCGAAACCTC
TTCGTCATCCCCATCCGACGCTCACACCGACAACGCTACCCTCCCTCCCT
CCCTCCCTCTCCCCCTCCCTTCCTTCTCTGCCTCCCCCTCCCATTCTCAG
GCGTTTACCAT
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Coding sequence (CDS) from alignment at KK037261.1:71037..72297-

>rna10072 ID=rna10072|Name=rna10072|organism=Nannochloropsis gaditana|type=CDS|length=2576bp|location=Sequence derived from alignment at KK037261.1:71037..72297- (Nannochloropsis gaditana)
TCAACTCCATCTACGAGCGCTACCTCCCCCGGGGCTGTGTCAAACCTTCC
CCCGACGCCGCCTTCGAGGAGCGGGAGATGTGGATACGTGCCAAATACGA
GCACAAGGTGCGTCTTCTGCCTTTCCACCATTTTTTTCCTCCCTCCTGCG
TCCCCATCGTCGCCTTTTACCCTCGCAGCTCCATCGCAGCCTGTCCTTCC
TCCCTTCCTGCCCCGTTCCCTCCCTCCCTCCCTCCTTCCCTCCCTCTGTG
CTTCATCCCCGAAACCTCTTCGTCATCCCCATCCGACGCTCACACCGACA
ACGCTACCCTCCCTCCCTCCCTCCCTCTCCCCCTCCCTTCCTTCTCTGCC
TCCCCCTCCCATTCTCAGGCGTTTACCATGTGGGCACTCATATCTCCCGC
GTACGCTCGGTGAACCTGGATGTGTGGACCGAGGAGGAGACTGCCTGTAT
GCGAGAGCTCTCGGGGAATGGGGGCAATGTCTACGGCCCGAGAGCTATTG
AGGCTATTACGTTTGCCTTCCAATCGCAGTTGTGCCGACTGCGACGCCCC
TCTCAACGACAGCACCAACGTTTGGGCTAGCATAACCCACGGCGTGTTCG
TTTGTGTGACATGTGTCTCTGTCCATCGGAGGATGGCAGCCCAGTCAACT
CCATCTACGAGCGCTACCTCCCCCGGGGCTGTGTCAAACCTTCCCCCGAC
GCCGCCTTCGAGGAGCGGGAGATGTGGATACGTGCCAAATACGAGCACAA
GGTGCGTCTTCTGCCTTTCCACCATTTTTTTCCTCCCTCCTGCGTCCCCA
TCGTCGCCTTTTACCCTCGCAGCTCCATCGCAGCCTGTCCTTCCTCCCTT
CCTGCCCCGTTCCCTCCCTCCCTCCCTCCTTCCCTCCCTCTGTGCTTCAT
CCCCGAAACCTCTTCGTCATCCCCATCCGACGCTCACACCGACAACGCTA
CCCTCCCTCCCTCCCTCCCTCTCCCCCTCCCTTCCTTCTCTGCCTCCCCC
TCCCATTCTCAGGCGTTTACCATGTGGGCACTCATATCTCCCGCGTACGC
TCGGTGAACCTGGATGTGTGGACCGAGGAGGAGACTGCCTGTATGCGAGA
GCTCTCGGGGAATGGGGGCAATGTCTACGGCCCGAGAGCTATTGAGGCTA
TTACGTTTGCCTTCCAATCGCAGTTGTGCCGACTGCGACGCCCCTCTCAA
CGACAGCACCAACGTTTGGGCTAGCATAACCCACGGCGTGTTCGTTTGTG
TGACATGTGTCTCTGTCCATCGGAGGATGGCAGCCCAGTCAACTCCATCT
ACGAGCGCTACCTCCCCCGGGGCTGTGTCAAACCTTCCCCCGACGCCGCC
TTCGAGGAGCGGGAGATGTGGATACGTGCCAAATACGAGCACAAGGTGCG
TCTTCTGCCTTTCCACCATTTTTTTCCTCCCTCCTGCGTCCCCATCGTCG
CCTTTTACCCTCGCAGCTCCATCGCAGCCTGTCCTTCCTCCCTTCCTGCC
CCGTTCCCTCCCTCCCTCCCTCCTTCCCTCCCTCTGTGCTTCATCCCCGA
AACCTCTTCGTCATCCCCATCCGACGCTCACACCGACAACGCTACCCTCC
CTCCCTCCCTCCCTCTCCCCCTCCCTTCCTTCTCTGCCTCCCCCTCCCAT
TCTCAGGCGTTTACCATGTGGGCACTCATATCTCCCGCGTACGCTCGGTG
AACCTGGATGTGTGGACCGAGGAGGAGACTGCCTGTATGCGAGAGCTCTC
GGGGAATGGGGGCAATGTCTACGGCCCGAGAGCTATTGAGGCTATTACGT
TTGCCTTCCAATCGCAGTTGTGCCGACTGCGACGCCCCTCTCAACGACAG
CACCAACGTTTGGGCTAGCATAACCCACGGCGTGTTCGTTTGTGTGACAT
GTGTCTCTGTCCATCGGAGGATGGCAGCCCAGTCAACTCCATCTACGAGC
GCTACCTCCCCCGGGGCTGTGTCAAACCTTCCCCCGACGCCGCCTTCGAG
GAGCGGGAGATGTGGATACGTGCCAAATACGAGCACAAGGTGCGTCTTCT
GCCTTTCCACCATTTTTTTCCTCCCTCCTGCGTCCCCATCGTCGCCTTTT
ACCCTCGCAGCTCCATCGCAGCCTGTCCTTCCTCCCTTCCTGCCCCGTTC
CCTCCCTCCCTCCCTCCTTCCCTCCCTCTGTGCTTCATCCCCGAAACCTC
TTCGTCATCCCCATCCGACGCTCACACCGACAACGCTACCCTCCCTCCCT
CCCTCCCTCTCCCCCTCCCTTCCTTCTCTGCCTCCCCCTCCCATTCTCAG
GCGTTTACCATGTGGGCACTCATATCTCCCGCGTACGCTCGGTGAACCTG
GATGTGTGGACCGAGGAGGAGACTGCCTGTATGCGAGAGCTCTCGGGGAA
TGGGGGCAATGTCTACGGCCCGAGAGCTATTGAGGCTATTACGTTTGCCT
TCCAATCGCAGTTGTGCCGACTGCGACGCCCCTCTCAACGACAGCACCAA
CGTTTGGGCTAGCATAACCCACGGCGTGTTCGTTTGTGTGACATGTGTCT
CTGTCCATCGGAGGATGGCAGCCCAG
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Synonyms
Publications