rna10064, rna10064 (mRNA) Nannochloropsis gaditana

Overview
Namerna10064
Unique Namerna10064
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1239
Alignment locationKK037261.1:47788..48812 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100228g8.4659.mrna
Orig protein idgnl|cribi|Naga_100228g8.4659
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037261.1supercontigKK037261.1:47788..48812 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100228g8gene9765Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10064rna10064-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20642.1cds10033Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10064 ID=rna10064|Name=rna10064|organism=Nannochloropsis gaditana|type=mRNA|length=1239bp
ATGCAAACTTCTAACGGGGACCATGGGGAGGAGGAGAACTGGAAGAAGGA
GCTTGTGAAGCCAAAAGCCGACACCAGGGTTCAGACCGAGGACGTGACCA
TGACCAAGGGCCAGGACTTCTCGGACTATTTCCTGAAGCGGGAGTTACTG
ATGGGCATCTACGAGAAAGGCTTCGAGAAACCGTCCCCCGTCCAGGAAGA
AGCCATCCCCATCCTCCTCTCGGGTCGGAACGTGCTGGCCCGCGCCAAGA
ACGGGACGGGGAAGACGGCAGCATTTATCATTCCTTGCCTCGAAAAAACT
GACGTGACAAAGCAACACATCCAAGTGTTGATGCTAGTGCCCACTCGAGA
GCTCGCCTTACAAACGTCATCAATCGTCAAAGAGATGGGAAAGCACATGA
ACGTCCAGTGCATGGTCTCCACGGGCGGCACCACCCTGAAGGACGACATT
ATGCGCCTGTACAACGTCGTCCACGTCCTGGTGGGCACCCCAGGACGCAT
CCTCGACCTTGCAGATAAGGGCGTGGCGGATTTGAGCAAGTGCCACACTG
TGATCATGGACGAGGCCGACAAGCTCCTCTCCCCCGAGTTTCAGCCCATC
CTCGAACGCCTCCTGGCCCATTGTATGCCCAACCGCCAGATCGGCCTTTT
CTCGGCGACGTTTCCCGTGGCCGTCAAAACCTTTAAGGACAAGCACATCG
AGAACCCTTACGAGATCAACCTGATGGATGAGCTGACCCTCAGGGGTATT
ACTCAATATTATGCCTTTGTGGAGGAGCGTCAGAAGGTCCACTGCCTCAA
CACCCTCTTCTCCAAGCTCGAGATCAATCAGTCCATCATCTTTTGTAACT
CTGTCAATCGCGTCGAGCTTCTTGCCAAGAAGATTACCGAGCTCGGCTAC
TCTTGTTTCTATATCCATGCGAAAATGCAACAGTCCCACCGCAACCGCGT
CTTCCACGAATTCCGGAACGGGGGCACGCGCCACCTTGTCTCTTCAGATC
TGTTCACTCGTGGCATTGACATCCAGAGCGTAAACGTGGTTATTAATTTC
GATTTTCCTAAGACGGCAGAAACCTACCTGCACCGCATCGGCCGCTCCGG
ACGCTTCGGTCACCTGGGCCTGGCCATCAATCTGATCACCTACGACGACC
GCTTCAATTTGTTTAGAATCGAACAGGAACTCGGCACGGAGATCAAACCG
ATCCCTCGCGACATTGACCGCTCCTTATACTGCGTTTGA
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protein sequence of rna10064

>rna10064-protein ID=rna10064-protein|Name=rna10064|organism=Nannochloropsis gaditana|type=polypeptide|length=217bp
MSPLRTQLLDVHCFPAQCPPCQSLLHLPGRREERMKAVRPPPPPPPLPPP
PPPRLLLHLPHLPEVQEEAHLRHQLLHVEAKENEEKKVTNEKKGIGGEGA
RPPPNGSSGSTRTGGGKRGSEKGGEGKKGEETDATIQSHPPAHHEDVGGE
AEVGKEREGGREEGREEGREDAREEGTGTTGTPGSGPGRRRGNAGRREGR
EEWRVGMTGGKRTGGAR
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mRNA from alignment at KK037261.1:47788..48812+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10064 ID=rna10064|Name=rna10064|organism=Nannochloropsis gaditana|type=mRNA|length=1025bp|location=Sequence derived from alignment at KK037261.1:47788..48812+ (Nannochloropsis gaditana)
ctcctacccacccgccccctccatttTCTACACGAGAGAGGTGTGATGGG
CTATTGGTCCTTTAGCGCGTGAAATAGGTCGCTCTATCGCCCCTCCTCAT
GGCCATGCTCTCATCATGGTCCAgtagccttcctcctttcttgcgCTTTC
TTAGGGCTCCAGGATTATCTTTGACGTGTGGGGGGATATTACCCGATCCT
GGATGTCTCCTTTACGTACTCAGCTCTTAGACGTCCATTGTTTTCCAGCA
CAATGCCCGCCTTGTCAGagtctccttcacctccccggaaggcgagagga
gaggatgaaagccgtccgacctccccctcctcctcctcctcttcctcctc
ctcctcctcctcgtctccttcttcatcttcctcatcttccagAAGTGCAA
GGTAAGTGTGAAGGTTCATTGTGCGTGTCGAGTCCCTCGTCTTGGGGCGG
GCTGGTGTCCACTAGGTATAtgccccttctctccctttccctctctcagt
CCTCTGCCATCTCCGTTTCCATCAGAAGAAGCCCATCTGCGTCAccaact
cctccacgtcgaagCCAAGGAAaacgaagaaaagaaagtgacgaacgaga
agaaaggaatagggggagaaggagctcgccctcccccaaaCGGGTCAAGC
GGGAGCACGAGgacaggcggggggaagagagggagcgagaaaggggggga
aggaaagaagggagaagagaccGACGCCACTATTCAAAGTCACCCTCCCG
CTCACCACGAAGACGTAGGGGGCGAAGCGGAagtcgggaaggagagggaa
ggagggagggaggaagggagagaggaagggagggaggacgcaagggagga
agggacgggcaCGACAGGCACTCCAGGCAGCGGTCcaggtcgaaggaggg
gaaacgcagggaggagggaagggagggaagaatggagggtgggaatgaca
gggggaaagagaacggggggggcgaggtgagggaaggagagaaaggagtc
GAGAGGGTGAAACCGAATATCTTGC
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Coding sequence (CDS) from alignment at KK037261.1:47788..48812+

>rna10064 ID=rna10064|Name=rna10064|organism=Nannochloropsis gaditana|type=CDS|length=1308bp|location=Sequence derived from alignment at KK037261.1:47788..48812+ (Nannochloropsis gaditana)
ATGTCTCCTTTACGTACTCAGCTCTTAGACGTCCATTGTTTTCCAGCACA
ATGCCCGCCTTGTCAGagtctccttcacctccccggaaggcgagaggaga
ggatgaaagccgtccgacctccccctcctcctcctcctcttcctcctcct
cctcctcctcgtctccttcttcatcttcctcatcttccagAAGTGCAAGA
AGAAGCCCATCTGCGTCAccaactcctccacgtcgaagCCAAGGAAaacg
aagaaaagaaagtgacgaacgagaagaaaggaatagggggagaaggagct
cgccctcccccaaaCGGGTCAAGCGGGAGCACGAGgacaggcggggggaa
gagagggagcgagaaagggggggaaggaaagaagggagaagagaccGACG
CCACTATTCAAAGTCACCCTCCCGCTCACCACGAAGACGTAGGGGGCGAA
GCGGAagtcgggaaggagagggaaggagggagggaggaagggagagagga
agggagggaggacgcaagggaggaagggacgggcaCGACAGGCACTCCAG
GCAGCGGTCcaggtcgaaggaggggaaacgcagggaggagggaagggagg
gaagaatggagggtgggaatgacagggggaaagagaacggggggggcgag
gtgaATGTCTCCTTTACGTACTCAGCTCTTAGACGTCCATTGTTTTCCAG
CACAATGCCCGCCTTGTCAGagtctccttcacctccccggaaggcgagag
gagaggatgaaagccgtccgacctccccctcctcctcctcctcttcctcc
tcctcctcctcctcgtctccttcttcatcttcctcatcttccagAAGTGC
AAGAAGAAGCCCATCTGCGTCAccaactcctccacgtcgaagCCAAGGAA
aacgaagaaaagaaagtgacgaacgagaagaaaggaatagggggagaagg
agctcgccctcccccaaaCGGGTCAAGCGGGAGCACGAGgacaggcgggg
ggaagagagggagcgagaaagggggggaaggaaagaagggagaagagacc
GACGCCACTATTCAAAGTCACCCTCCCGCTCACCACGAAGACGTAGGGGG
CGAAGCGGAagtcgggaaggagagggaaggagggagggaggaagggagag
aggaagggagggaggacgcaagggaggaagggacgggcaCGACAGGCACT
CCAGGCAGCGGTCcaggtcgaaggaggggaaacgcagggaggagggaagg
gagggaagaatggagggtgggaatgacagggggaaagagaacgggggggg
cgaggtga
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Synonyms
Publications